TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 196 - 241 | 4.2e-09 | PPR repeat family |
| PPR_long | PF17177 | 198 - 306 | 9.6e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 217 - 272 | 2.3e-07 | Pentatricopeptide repeat domain |
| PPR | PF01535 | 230 - 260 | 2.5e-06 | PPR repeat |
| PPR_2 | PF13041 | 232 - 276 | 1.2e-11 | PPR repeat family |
| PPR_1 | PF12854 | 258 - 291 | 3.9e-09 | PPR repeat |
| PPR_2 | PF13041 | 264 - 311 | 7.7e-17 | PPR repeat family |
| PPR_1 | PF12854 | 293 - 325 | 1.1e-10 | PPR repeat |
| PPR | PF01535 | 300 - 329 | 9.8e-06 | PPR repeat |
| PPR_3 | PF13812 | 355 - 414 | 9.2e-11 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 370 - 416 | 4.2e-17 | PPR repeat family |
| PPR | PF01535 | 370 - 400 | 5e-06 | PPR repeat |
| PPR_1 | PF12854 | 398 - 431 | 1.2e-12 | PPR repeat |
| PPR_2 | PF13041 | 406 - 433 | 7.2e-08 | PPR repeat family |
| PPR | PF01535 | 406 - 433 | 1.3e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 90 |
| AccB1I | GGYRCC | 1 cut(s) | 293 |
| AccI | GTMKAC | 1 cut(s) | 899 |
| AciI | CCGC | 2 cut(s) | 1000, 1104 |
| AclWI | GGATC | 3 cut(s) | 219, 1073, 1142 |
| AcsI | RAATTY | 3 cut(s) | 134, 316, 787 |
| AcuI | CTGAAG | 1 cut(s) | 170 |
| AfaI | GTAC | 4 cut(s) | 142, 796, 1010, 1241 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 217, 415 |
| AjnI | CCWGG | 1 cut(s) | 246 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 307, 339 |
| AluBI | AGCT | 5 cut(s) | 11, 183, 205, 364, 679 |
| AluI | AGCT | 5 cut(s) | 11, 183, 205, 364, 679 |
| Alw21I | GWGCWC | 2 cut(s) | 185, 312 |
| AlwI | GGATC | 3 cut(s) | 219, 1073, 1142 |
| Ama87I | CYCGRG | 1 cut(s) | 1086 |
| AoxI | GGCC | 1 cut(s) | 1056 |
| ApeKI | GCWGC | 1 cut(s) | 533 |
| ApoI | RAATTY | 3 cut(s) | 134, 316, 787 |
| AspS9I | GGNCC | 3 cut(s) | 73, 405, 1057 |
| AsuC2I | CCSGG | 1 cut(s) | 409 |
| AsuHPI | GGTGA | 2 cut(s) | 266, 820 |
| AvaI | CYCGRG | 1 cut(s) | 1086 |
| AvaII | GGWCC | 2 cut(s) | 73, 405 |
| AxyI | CCTNAGG | 1 cut(s) | 1061 |
| BaeGI | GKGCMC | 1 cut(s) | 298 |
| BanI | GGYRCC | 1 cut(s) | 293 |
| BanII | GRGCYC | 1 cut(s) | 185 |
| Bbv12I | GWGCWC | 2 cut(s) | 185, 312 |
| BbvI | GCAGC | 1 cut(s) | 520 |
| BciT130I | CCWGG | 1 cut(s) | 248 |
| BclI | TGATCA | 1 cut(s) | 705 |
| BcnI | CCSGG | 1 cut(s) | 409 |
| BfmI | CTRYAG | 1 cut(s) | 82 |
| BisI | GCNGC | 1 cut(s) | 534 |
| BlsI | GCNGC | 1 cut(s) | 535 |
| Bme1390I | CCNGG | 2 cut(s) | 248, 409 |
| Bme18I | GGWCC | 2 cut(s) | 73, 405 |
| BmeT110I | CYCGRG | 1 cut(s) | 1086 |
| BmgT120I | GGNCC | 3 cut(s) | 73, 405, 1057 |
| BmiI | GGNNCC | 3 cut(s) | 74, 295, 407 |
| BmrFI | CCNGG | 2 cut(s) | 248, 409 |
| BpuMI | CCSGG | 1 cut(s) | 409 |
| Bsa29I | ATCGAT | 1 cut(s) | 866 |
| BsaJI | CCNNGG | 1 cut(s) | 379 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 161, 191 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 217, 415 |
| Bse118I | RCCGGY | 1 cut(s) | 415 |
| Bse21I | CCTNAGG | 1 cut(s) | 1061 |
| Bse3DI | GCAATG | 2 cut(s) | 706, 1011 |
| BseBI | CCWGG | 1 cut(s) | 248 |
| BseCI | ATCGAT | 1 cut(s) | 866 |
| BseDI | CCNNGG | 1 cut(s) | 379 |
| BseGI | GGATG | 4 cut(s) | 121, 633, 663, 736 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 217, 415 |
| BseMI | GCAATG | 2 cut(s) | 706, 1011 |
| BseRI | GAGGAG | 1 cut(s) | 1104 |
| BseSI | GKGCMC | 1 cut(s) | 298 |
| BseXI | GCAGC | 1 cut(s) | 520 |
| BsgI | GTGCAG | 1 cut(s) | 949 |
| BshFI | GGCC | 1 cut(s) | 1058 |
| BshNI | GGYRCC | 1 cut(s) | 293 |
| BshVI | ATCGAT | 1 cut(s) | 866 |
| BsiHKAI | GWGCWC | 2 cut(s) | 185, 312 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1086 |
| BsiSI | CCGG | 2 cut(s) | 409, 416 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 217, 415 |
| BsmI | GAATGC | 3 cut(s) | 322, 590, 1192 |
| BsnI | GGCC | 1 cut(s) | 1058 |
| BsoBI | CYCGRG | 1 cut(s) | 1086 |
| Bsp1286I | GDGCHC | 3 cut(s) | 185, 298, 312 |
| Bsp1407I | TGTACA | 1 cut(s) | 1008 |
| Bsp143I | GATC | 5 cut(s) | 224, 705, 941, 1065, 1134 |
| Bsp19I | CCATGG | 1 cut(s) | 379 |
| BspACI | CCGC | 2 cut(s) | 1000, 1104 |
| BspANI | GGCC | 1 cut(s) | 1058 |
| BspDI | ATCGAT | 1 cut(s) | 866 |
| BspHI | TCATGA | 1 cut(s) | 841 |
| BspLI | GGNNCC | 3 cut(s) | 74, 295, 407 |
| BspMAI | CTGCAG | 1 cut(s) | 86 |
| BspPI | GGATC | 3 cut(s) | 219, 1073, 1142 |
| BspT107I | GGYRCC | 1 cut(s) | 293 |
| BsrDI | GCAATG | 2 cut(s) | 706, 1011 |
| BsrFI | RCCGGY | 1 cut(s) | 415 |
| BsrGI | TGTACA | 1 cut(s) | 1008 |
| BssAI | RCCGGY | 1 cut(s) | 415 |
| BssECI | CCNNGG | 1 cut(s) | 379 |
| BssMI | GATC | 5 cut(s) | 224, 705, 941, 1065, 1134 |
| BssNAI | GTATAC | 1 cut(s) | 900 |
| BssT1I | CCWWGG | 1 cut(s) | 379 |
| Bst1107I | GTATAC | 1 cut(s) | 900 |
| Bst2UI | CCWGG | 1 cut(s) | 248 |
| Bst4CI | ACNGT | 4 cut(s) | 127, 502, 756, 1244 |
| Bst6I | CTCTTC | 2 cut(s) | 932, 1068 |
| BstAUI | TGTACA | 1 cut(s) | 1008 |
| BstC8I | GCNNGC | 2 cut(s) | 375, 417 |
| BstDEI | CTNAG | 2 cut(s) | 669, 1061 |
| BstDSI | CCRYGG | 1 cut(s) | 379 |
| BstEII | GGTNACC | 1 cut(s) | 254 |
| BstF5I | GGATG | 4 cut(s) | 121, 633, 663, 736 |
| BstKTI | GATC | 5 cut(s) | 227, 708, 944, 1068, 1137 |
| BstMBI | GATC | 5 cut(s) | 224, 705, 941, 1065, 1134 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 370 |
| BstNI | CCWGG | 1 cut(s) | 248 |
| BstNSI | RCATGY | 1 cut(s) | 377 |
| BstPI | GGTNACC | 1 cut(s) | 254 |
| BstSCI | CCNGG | 2 cut(s) | 246, 407 |
| BstSFI | CTRYAG | 1 cut(s) | 82 |
| BstSLI | GKGCMC | 1 cut(s) | 298 |
| BstV1I | GCAGC | 1 cut(s) | 520 |
| BstX2I | RGATCY | 1 cut(s) | 1134 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 251 |
| BstYI | RGATCY | 1 cut(s) | 1134 |
| BstZ17I | GTATAC | 1 cut(s) | 900 |
| Bsu15I | ATCGAT | 1 cut(s) | 866 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1061 |
| BsuRI | GGCC | 1 cut(s) | 1058 |
| BsuTUI | ATCGAT | 1 cut(s) | 866 |
| BtgI | CCRYGG | 1 cut(s) | 379 |
| BtsCI | GGATG | 4 cut(s) | 121, 633, 663, 736 |
| BtsIMutI | CAGTG | 1 cut(s) | 132 |
| Cac8I | GCNNGC | 2 cut(s) | 375, 417 |
| CciI | TCATGA | 1 cut(s) | 841 |
| Cfr10I | RCCGGY | 1 cut(s) | 415 |
| Cfr13I | GGNCC | 3 cut(s) | 73, 405, 1057 |
| ClaI | ATCGAT | 1 cut(s) | 866 |
| CsiI | ACCWGGT | 1 cut(s) | 246 |
| Csp6I | GTAC | 4 cut(s) | 141, 795, 1009, 1240 |
| CviAII | CATG | 4 cut(s) | 17, 374, 380, 842 |
| CviQI | GTAC | 4 cut(s) | 141, 795, 1009, 1240 |
| DdeI | CTNAG | 2 cut(s) | 669, 1061 |
| DpnI | GATC | 5 cut(s) | 226, 707, 943, 1067, 1136 |
| DpnII | GATC | 5 cut(s) | 224, 705, 941, 1065, 1134 |
| Eam1104I | CTCTTC | 2 cut(s) | 932, 1068 |
| EarI | CTCTTC | 2 cut(s) | 932, 1068 |
| Ecl136II | GAGCTC | 1 cut(s) | 183 |
| Eco130I | CCWWGG | 1 cut(s) | 379 |
| Eco24I | GRGCYC | 1 cut(s) | 185 |
| Eco47I | GGWCC | 2 cut(s) | 73, 405 |
| Eco53kI | GAGCTC | 1 cut(s) | 183 |
| Eco57I | CTGAAG | 1 cut(s) | 170 |
| Eco81I | CCTNAGG | 1 cut(s) | 1061 |
| Eco88I | CYCGRG | 1 cut(s) | 1086 |
| Eco91I | GGTNACC | 1 cut(s) | 254 |
| EcoICRI | GAGCTC | 1 cut(s) | 183 |
| EcoO109I | RGGNCCY | 2 cut(s) | 405, 1057 |
| EcoO65I | GGTNACC | 1 cut(s) | 254 |
| EcoRI | GAATTC | 1 cut(s) | 134 |
| EcoRII | CCWGG | 1 cut(s) | 246 |
| EcoT14I | CCWWGG | 1 cut(s) | 379 |
| EcoT22I | ATGCAT | 1 cut(s) | 1276 |
| EcoT38I | GRGCYC | 1 cut(s) | 185 |
| ErhI | CCWWGG | 1 cut(s) | 379 |
| FaeI | CATG | 4 cut(s) | 20, 377, 383, 845 |
| FatI | CATG | 4 cut(s) | 16, 373, 379, 841 |
| FbaI | TGATCA | 1 cut(s) | 705 |
| FblI | GTMKAC | 1 cut(s) | 899 |
| Fnu4HI | GCNGC | 1 cut(s) | 534 |
| FokI | GGATG | 4 cut(s) | 128, 640, 670, 743 |
| FriOI | GRGCYC | 1 cut(s) | 185 |
| Fsp4HI | GCNGC | 1 cut(s) | 534 |
| GluI | GCNGC | 1 cut(s) | 534 |
| HaeIII | GGCC | 1 cut(s) | 1058 |
| HapII | CCGG | 2 cut(s) | 409, 416 |
| Hin1II | CATG | 4 cut(s) | 20, 377, 383, 845 |
| HindIII | AAGCTT | 1 cut(s) | 362 |
| HinfI | GANTC | 5 cut(s) | 67, 170, 991, 1029, 1166 |
| HpaII | CCGG | 2 cut(s) | 409, 416 |
| HphI | GGTGA | 2 cut(s) | 266, 820 |
| Hpy166II | GTNNAC | 4 cut(s) | 76, 507, 900, 1261 |
| Hpy188I | TCNGA | 6 cut(s) | 39, 97, 150, 472, 786, 946 |
| Hpy188III | TCNNGA | 5 cut(s) | 640, 842, 995, 1033, 1247 |
| Hpy8I | GTNNAC | 4 cut(s) | 76, 507, 900, 1261 |
| HpyAV | CCTTC | 5 cut(s) | 610, 766, 808, 871, 1153 |
| HpyCH4III | ACNGT | 4 cut(s) | 127, 502, 756, 1244 |
| HpyCH4IV | ACGT | 1 cut(s) | 1047 |
| HpyCH4V | TGCA | 6 cut(s) | 32, 84, 322, 930, 1130, 1274 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 370 |
| HpyF3I | CTNAG | 2 cut(s) | 669, 1061 |
| HpySE526I | ACGT | 1 cut(s) | 1047 |
| Hsp92II | CATG | 4 cut(s) | 20, 377, 383, 845 |
| KroI | GCCGGC | 1 cut(s) | 415 |
| KroNI | GCCGGC | 1 cut(s) | 417 |
| Ksp22I | TGATCA | 1 cut(s) | 705 |
| Kzo9I | GATC | 5 cut(s) | 224, 705, 941, 1065, 1134 |
| LmnI | GCTCC | 2 cut(s) | 315, 1249 |
| Lsp1109I | GCAGC | 1 cut(s) | 520 |
| MabI | ACCWGGT | 1 cut(s) | 246 |
| MaeII | ACGT | 1 cut(s) | 1047 |
| MaeIII | GTNAC | 2 cut(s) | 254, 1108 |
| MalI | GATC | 5 cut(s) | 226, 707, 943, 1067, 1136 |
| MboI | GATC | 5 cut(s) | 224, 705, 941, 1065, 1134 |
| MboII | GAAGA | 4 cut(s) | 224, 949, 959, 1085 |
| MfeI | CAATTG | 1 cut(s) | 299 |
| MflI | RGATCY | 1 cut(s) | 1134 |
| MhlI | GDGCHC | 3 cut(s) | 185, 298, 312 |
| MluCI | AATT | 9 cut(s) | 134, 299, 316, 355, 592, 787, 915, 1197, 1230 |
| MlyI | GAGTC | 1 cut(s) | 179 |
| MmeI | TCCRAC | 1 cut(s) | 369 |
| MnlI | CCTC | 8 cut(s) | 106, 123, 457, 523, 624, 658, 741, 1082 |
| Mph1103I | ATGCAT | 1 cut(s) | 1276 |
| MroNI | GCCGGC | 1 cut(s) | 415 |
| MseI | TTAA | 4 cut(s) | 272, 1095, 1229, 1281 |
| MslI | CAYNNNNRTG | 1 cut(s) | 378 |
| MspI | CCGG | 2 cut(s) | 409, 416 |
| MspR9I | CCNGG | 2 cut(s) | 248, 409 |
| MunI | CAATTG | 1 cut(s) | 299 |
| Mva1269I | GAATGC | 3 cut(s) | 322, 590, 1192 |
| MvaI | CCWGG | 1 cut(s) | 248 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 370 |
| NaeI | GCCGGC | 1 cut(s) | 417 |
| NciI | CCSGG | 1 cut(s) | 409 |
| NcoI | CCATGG | 1 cut(s) | 379 |
| NdeII | GATC | 5 cut(s) | 224, 705, 941, 1065, 1134 |
| NgoMIV | GCCGGC | 1 cut(s) | 415 |
| NlaIII | CATG | 4 cut(s) | 20, 377, 383, 845 |
| NlaIV | GGNNCC | 3 cut(s) | 74, 295, 407 |
| NmeAIII | GCCGAG | 1 cut(s) | 600 |
| NmuCI | GTSAC | 2 cut(s) | 254, 1108 |
| NsiI | ATGCAT | 1 cut(s) | 1276 |
| NspI | RCATGY | 1 cut(s) | 377 |
| PaeI | GCATGC | 1 cut(s) | 377 |
| PaeR7I | CTCGAG | 1 cut(s) | 1086 |
| PagI | TCATGA | 1 cut(s) | 841 |
| PctI | GAATGC | 3 cut(s) | 322, 590, 1192 |
| PdiI | GCCGGC | 1 cut(s) | 417 |
| PfeI | GAWTC | 4 cut(s) | 67, 991, 1029, 1166 |
| PkrI | GCNGC | 1 cut(s) | 535 |
| PleI | GAGTC | 1 cut(s) | 178 |
| PpsI | GAGTC | 1 cut(s) | 178 |
| PpuMI | RGGWCCY | 1 cut(s) | 405 |
| PsiI | TTATAA | 1 cut(s) | 90 |
| Psp124BI | GAGCTC | 1 cut(s) | 185 |
| Psp5II | RGGWCCY | 1 cut(s) | 405 |
| Psp6I | CCWGG | 1 cut(s) | 246 |
| PspEI | GGTNACC | 1 cut(s) | 254 |
| PspGI | CCWGG | 1 cut(s) | 246 |
| PspN4I | GGNNCC | 3 cut(s) | 74, 295, 407 |
| PspPI | GGNCC | 3 cut(s) | 73, 405, 1057 |
| PspPPI | RGGWCCY | 1 cut(s) | 405 |
| PspXI | VCTCGAGB | 1 cut(s) | 1086 |
| PstI | CTGCAG | 1 cut(s) | 86 |
| PsuI | RGATCY | 1 cut(s) | 1134 |
| RsaI | GTAC | 4 cut(s) | 142, 796, 1010, 1241 |
| RsaNI | GTAC | 4 cut(s) | 141, 795, 1009, 1240 |
| RseI | CAYNNNNRTG | 1 cut(s) | 378 |
| SacI | GAGCTC | 1 cut(s) | 185 |
| SaqAI | TTAA | 4 cut(s) | 272, 1095, 1229, 1281 |
| SatI | GCNGC | 1 cut(s) | 534 |
| Sau3AI | GATC | 5 cut(s) | 224, 705, 941, 1065, 1134 |
| Sau96I | GGNCC | 3 cut(s) | 73, 405, 1057 |
| SchI | GAGTC | 1 cut(s) | 179 |
| ScrFI | CCNGG | 2 cut(s) | 248, 409 |
| SduI | GDGCHC | 3 cut(s) | 185, 298, 312 |
| SexAI | ACCWGGT | 1 cut(s) | 246 |
| SfcI | CTRYAG | 1 cut(s) | 82 |
| Sfr274I | CTCGAG | 1 cut(s) | 1086 |
| SinI | GGWCC | 2 cut(s) | 73, 405 |
| SlaI | CTCGAG | 1 cut(s) | 1086 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 378 |
| SmlI | CTYRAG | 1 cut(s) | 1086 |
| SmoI | CTYRAG | 1 cut(s) | 1086 |
| SphI | GCATGC | 1 cut(s) | 377 |
| Sse9I | AATT | 9 cut(s) | 134, 299, 316, 355, 592, 787, 915, 1197, 1230 |
| SsiI | CCGC | 2 cut(s) | 1000, 1104 |
| SstI | GAGCTC | 1 cut(s) | 185 |
| StyD4I | CCNGG | 2 cut(s) | 246, 407 |
| StyI | CCWWGG | 1 cut(s) | 379 |
| TaaI | ACNGT | 4 cut(s) | 127, 502, 756, 1244 |
| TaiI | ACGT | 1 cut(s) | 1050 |
| TaqI | TCGA | 4 cut(s) | 223, 332, 866, 1087 |
| TasI | AATT | 9 cut(s) | 134, 299, 316, 355, 592, 787, 915, 1197, 1230 |
| TatI | WGTACW | 1 cut(s) | 1008 |
| TfiI | GAWTC | 4 cut(s) | 67, 991, 1029, 1166 |
| Tru1I | TTAA | 4 cut(s) | 272, 1095, 1229, 1281 |
| Tru9I | TTAA | 4 cut(s) | 272, 1095, 1229, 1281 |
| TscAI | CASTG | 1 cut(s) | 132 |
| TseFI | GTSAC | 2 cut(s) | 254, 1108 |
| TseI | GCWGC | 1 cut(s) | 533 |
| Tsp45I | GTSAC | 2 cut(s) | 254, 1108 |
| TspDTI | ATGAA | 5 cut(s) | 135, 830, 858, 1199, 1304 |
| TspGWI | ACGGA | 2 cut(s) | 163, 217 |
| TspRI | CASTG | 1 cut(s) | 132 |
| VpaK11BI | GGWCC | 2 cut(s) | 73, 405 |
| XapI | RAATTY | 3 cut(s) | 134, 316, 787 |
| XceI | RCATGY | 1 cut(s) | 377 |
| XhoI | CTCGAG | 1 cut(s) | 1086 |
| XmiI | GTMKAC | 1 cut(s) | 899 |
| Zsp2I | ATGCAT | 1 cut(s) | 1276 |