MD08G1203600.v1.1

Toll - interleukin 1 - resistance

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
26321687 .. 26325810
4124 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1203600.v1.1.491

Sequence Viewer

Length: 2931 bp
ATGAGTACCAGGACACAGCATGAAGCATCCTCCTCATCGAAACGTTGGACGCACGACGTGTTCTTGAGCTTCAGAGGCGACGACACACGCAACGGTTTCACAGGCCACCTCTACATGACACTGAAAGAGGCTGGAGTCGACGCTTTCATTGACAACCAGCTAAGAAGAGGGGAAGAAATAACAACCGAACTGGTTCAGGCAATCCGAGGGTCTAGGATTTCTGTCATCGTCTTCTCAAAGAGATATGCAGATTCAAGCTGGTGTCTTCAGGAGCTTGTGGAGATCATGGACTGTAGGAGAAGACTTGGACAAATAGTCTTGCCAGTATTCTACGATGTCGATCCTTCACATGTCAGGAAACAGACTAGTGGTAGTTTTGCACAAGCATTTCAGAAACACGAAGAAAGCTTTCATCAAGATACCGATAAGGTAGCGAGGTGGAGAGCTGCTCTTACGGAAGCTTCAAATTTGTCCGGTTGGGATCTCATAAACACTGCAAATGGGAATGAGGCAGAGCTTATCAGAAAAATTATTGGCGAAATCACTAAGCAACTCGATAGCAAATACTTAAGTGTAGCCGTCTACCAAGTTGGAATAGATTCTCGGGTGAAAGAGATTAACAGCTTAGATGGGGGATCATACGGTGTTCAAATGGTCGGAATTTGGGGTATGGGCGGAATGGGGAAAACATCAGTTGCAAAAGCCATCTATAACAAGTTCTACCATAGCTTTCATTACAAAAGTTTCCTTGCAAATGTTAGGGAAACTGCAAAGGAACCGAATGGCATGACGAATTTGCAAGAAAAGCTTCTTTCTGATATCTTCAAACCAACCAAGGTGGAGGTTGGTGATGTTCATAGAGGTATTAATGTGATAAAAGAAAAACTTCGAAGCAGGGCGGTACTGGTCATAATTGACGATGTAGATCATGTGGACCAACTAAATGCTTTAGCTGTAGCCCGTGACTCCTTTGGTCGAGGAAGTAAAATTTTTATTACAACAAGAGATCGACACCTACTAGAGCAAGTTGAAGTTAATATAATATATCTGGCTCGAAAAATGAAGGAAGAAGAAGCTCTTGAGCTCTTTAGTTGGCATGCTTTCCGAAATCGTTGTCCTAATGAAGAATATGTTGAACTGACAAGAAGTGTTCTTGGTTACTGTGGAGGCTTGCCGCTTGCTCTTGAAGTTTTAGGGTCGTTTCTGTTTAAAAGAAGCATAAGAGATTGGACAAGCACATTGAAGAAGTTGGAAAAAATTCCTCGTTTCGAAATTCAAGAAAAGCTTAAAATAAGCTTTGATGCTCTAAGTGATGAGGATGAGAGGGAAATATTCCTTGATATATCTTGTTTCTTCATAGGAATGGACAAGAACTATGTCACAAGGATCTTGGATGGTTGTGGGTTTTTTGCAGAAATCGGAATTAGTGTCCTCCTTCAACGATGCCTTGTAACTGTCGATGAGAAAAACAAGCTCGTGATGCATGATCTACTTCGAGACATGGGCAGAGAAATCGTGCGTGCAAAATTTCCAAACCACCCTGGCAATTGTAGTAGATTGTGGCGCCAAGAAGACGCAATAGGTGTACTGACAGACAAATCTGGAACGGAAGATATTGAAGGACTCGCCCTAAATTTGCTAAGATCAGACAAAACTAGTTTCAGTATGAAAGCGTTTAGAAAGATGAAGAGGCTAAGATTGCTCCAACTTAATTGTGTACATCTCACTGGAGACTACAAACATCTTTCCGCGAAGTTAAGATGGCTCTGCTGGCGAGGATTCCCTCTAAAGTTCATACCAAAAGAAGCATTAAATCAATTAAGAAGCCTAGTTTCTATCGACCTACGGTATAGCAATCTCATACAGTTTTGGAAGCATTCTATGTTGCTCGAGAAGTTGAAGATTCTGAATCTCAGCCATTCGTACTTCCTAAAACAATCGCCAAACTTCTCAAAACTGCCAAATCTTGAGTATTTGATACTCAAGGGCTGTAAGAGCTTGCTGGAGATTCACCACTCCGTAGGATGTCTTGAAAGACTTGCCTTGGTAAATCTCAAAGACTGCATAATGCTCAAGGATCTTCCAAAGAGTTTCTATAAGTTGAAACACGTTGAAACTCTTGTTCTTTCTGGCTGTTCAAGATTTCAAAACTTGGTTGGGGATATAGGAGAGATGGTATCATTGACAACTCTTCTTATAGATAACACAGCCATAGAAGAATTACCATATTCTTCCATAGCACGGTTGAAGAACCTGACACGTTTATCTCTATGCGGTCTGAAACTTATAGAACCCAACCCTTCCGTTTGGCCTTTGGTATTGACAAGAGAATATCCTCCTGAATTACATTGCTCAATTTCTTCCGAAGATTTCAGGACTATCGACATGGATAGCAACGAATTTTATATCCTTCCGAGGAATCATAAGCGCAAGACAACGAGCGAAGATGGTGTCATTTCCCCCCCTGGAAATGATATTGCCAAGTGGTTCACAAATGTCGACAATGAGGGTGATCGAGTCTGTTTCCAAGTGCCTCAAACCACTGGTTCTTACTTAAAATCGTTGACTGTGTGCACCGTTTATTCTTCATCATTACACAAGGACGCACCTCTTAATCATTTTGCTATATTTATTACGAATCATACCAAGATCATCAGCTTCGTTGTCCGGCCAATGGATCCCTACACAATAACTTCAAATGAAGTCATTTGGCAAGGACATTTATCAAACAAGGAGCTCAGCTTGGAAAGGGGAGACTCCATTGAAGTTTATATTGTGATGGGATCTGGTTTCAGGGTGAAGAAAACTGGGGTACATCTCGTATGGGATCCCGAGTTGATCAACGAAAATGTGATTGAGTTCGAGTCTATCCCATATGCTTATTTTCGTAGTGATGTGGAGTATGAGGCAGGACCGAGTCATGCCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

977

Amino Acids

111.5

Weight (kDa)

8.12

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 18 - 189 3.9e-51 TIR domain
TIR_2 PF13676 20 - 122 1.9e-15 TIR domain
NB-ARC PF00931 213 - 371 4.3e-18 NB-ARC domain
WHD_ROQ1 PF23282 439 - 508 7.9e-21 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36930 AT5G36930 AT5G36930 AT5G36930
fragaria_vesca FvH4_3g45361 FvH4_3g45380 FvH4_5g21061 FvH4_5g21062 FvH4_5g21063 FvH4_5g32050 FvH4_5g32970 FvH4_5g32990 FvH4_5g34190 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34211 FvH4_5g34240 FvH4_5g34250
malus_domestica MD00G1011700.v1.1 MD00G1026100.v1.1 MD00G1026500.v1.1 MD00G1027000.v1.1 MD00G1027100.v1.1 MD00G1027700.v1.1 MD00G1027800.v1.1 MD00G1028000.v1.1 MD00G1220000.v1.1 MD02G1024400.v1.1 MD02G1024800.v1.1 MD02G1026000.v1.1 MD02G1026100.v1.1 MD02G1031800.v1.1 MD02G1038500.v1.1 MD02G1038700.v1.1 MD02G1039200.v1.1 MD02G1040600.v1.1 MD02G1040900.v1.1 MD02G1041200.v1.1 MD02G1041300.v1.1 MD02G1041700.v1.1 MD02G1042000.v1.1 MD02G1043800.v1.1 MD02G1043900.v1.1 MD02G1044300.v1.1 MD02G1045200.v1.1 MD02G1045300.v1.1 MD02G1051200.v1.1 MD02G1052200.v1.1 MD02G1052800.v1.1 MD02G1053100.v1.1 MD02G1053600.v1.1 MD02G1055500.v1.1 MD02G1063300.v1.1 MD02G1063400.v1.1 MD02G1063800.v1.1 MD02G1306500.v1.1 MD02G1306600.v1.1 MD02G1306700.v1.1 MD02G1306900.v1.1 MD02G1307200.v1.1 MD04G1011700.v1.1 MD05G1315400.v1.1 MD05G1316000.v1.1 MD05G1316700.v1.1 MD05G1317000.v1.1 MD05G1317300.v1.1 MD05G1317600.v1.1 MD05G1317700.v1.1 MD07G1102800.v1.1 MD07G1238200.v1.1 MD08G1175900.v1.1 MD08G1203600.v1.1 MD09G1024200.v1.1 MD09G1039600.v1.1 MD09G1044800.v1.1 MD09G1045100.v1.1 MD10G1038700.v1.1 MD10G1039000.v1.1 MD10G1039200.v1.1 MD10G1040000.v1.1 MD10G1040200.v1.1 MD10G1040600.v1.1 MD10G1040800.v1.1 MD10G1297300.v1.1 MD12G1247500.v1.1 MD12G1247900.v1.1 MD12G1248300.v1.1 MD12G1248800.v1.1 MD15G1103700.v1.1 MD15G1103800.v1.1 MD15G1104000.v1.1 MD15G1179600.v1.1 MD15G1182500.v1.1 MD16G1068200.v1.1 MD16G1068300.v1.1 MD17G1024600.v1.1 MD17G1024700.v1.1 MD17G1025000.v1.1 MD17G1025900.v1.1
prunus_persica Prupe.1G539800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G557100_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557300_v2.0.a1
pyrus_communis pycom02g02080 pycom02g02090 pycom02g02110 pycom02g03220 pycom02g03260 pycom02g03370 pycom02g03390 pycom02g03410 pycom02g03420 pycom02g03450 pycom02g03500 pycom02g03730 pycom02g03770 pycom02g04400 pycom02g04410 pycom02g04430 pycom02g04450 pycom02g04460 pycom02g04490 pycom02g05200 pycom02g25710 pycom02g25750 pycom02g25790 pycom02g25810 pycom02g25830 pycom04g00920 pycom04g00930 pycom04g00940 pycom05g29300 pycom05g29310 pycom05g29380 pycom05g29410 pycom07g06310 pycom07g21420 pycom08g15070 pycom08g17540 pycom08g17560 pycom08g17570 pycom10g02670 pycom10g02680 pycom10g02700 pycom10g02770 pycom10g02790 pycom10g02800 pycom10g02810 pycom10g25020 pycom10g25030 pycom10g25050 pycom10g25080 pycom111g01990 pycom111g02000 pycom111g02030 pycom111g02040 pycom111g02050 pycom111g02060 pycom12g22710 pycom12g22720 pycom12g22730 pycom12g22740 pycom12g22750 pycom12g22770 pycom12g22780 pycom12g22790 pycom12g22800 pycom12g22810 pycom12g22830 pycom12g22840 pycom12g22860 pycom15g09440 pycom15g09480 pycom15g16120 pycom15g32380 pycom16g05970 pycom17g02100
rosa_chinensis RchiOBHm_Chr2g0144661 RchiOBHm_Chr4g0407491 RchiOBHm_Chr4g0407501 RchiOBHm_Chr4g0412381 RchiOBHm_Chr7g0208191 RchiOBHm_Chr7g0208201 RchiOBHm_Chr7g0208211 RchiOBHm_Chr7g0208221 RchiOBHm_Chr7g0228071 RchiOBHm_Chr7g0228121 RchiOBHm_Chr7g0230971 RchiOBHm_Chr7g0230981 RchiOBHm_Chr7g0233901 RchiOBHm_Chr7g0233951 RchiOBHm_Chr7g0233961 RchiOBHm_Chr7g0233991 RchiOBHm_Chr7g0234021 RchiOBHm_Chr7g0234151 RchiOBHm_Chr7g0234161 RchiOBHm_Chr7g0234241 RchiOBHm_Chr7g0234501 RchiOBHm_Chr7g0234641 RchiOBHm_Chr7g0234771 RchiOBHm_Chr7g0234781 RchiOBHm_Chr7g0234991 RchiOBHm_Chr7g0241291 RchiOBHm_Chr7g0241301
rosa_laevigata RLG00000001186 RLG00000001187 RLG00000001212 RLG00000001226 RLG00000001233 RLG00000001590 RLG00000003242 RLG00000003243 RLG00000003249 RLG00000008688 RLG00000008690
rosa_multiflora Rmu_co7966574.1_g000001 Rmu_co8120830.1_g000001 Rmu_co8142226.1_g000001 Rmu_co8293083.1_g000001 Rmu_co8351227.1_g000001 Rmu_co8380159.1_g000001 Rmu_co8456505.1_g000001 Rmu_sc0000676.1_g000025 Rmu_sc0000706.1_g000018 Rmu_sc0000706.1_g000040 Rmu_sc0000740.1_g000029 Rmu_sc0000740.1_g000032 Rmu_sc0000740.1_g000037 Rmu_sc0000740.1_g000040 Rmu_sc0000762.1_g000003 Rmu_sc0000762.1_g000019 Rmu_sc0000762.1_g000034 Rmu_sc0000762.1_g000069 Rmu_sc0000892.1_g000001 Rmu_sc0000945.1_g000040 Rmu_sc0001913.1_g000037 Rmu_sc0001913.1_g000041 Rmu_sc0001913.1_g000049 Rmu_sc0002775.1_g000017 Rmu_sc0002775.1_g000018 Rmu_sc0002775.1_g000020 Rmu_sc0002775.1_g000021 Rmu_sc0002775.1_g000022 Rmu_sc0002775.1_g000025 Rmu_sc0002775.1_g000026 Rmu_sc0002775.1_g000028 Rmu_sc0002775.1_g000030 Rmu_sc0004858.1_g000002 Rmu_sc0004864.1_g000022 Rmu_sc0005038.1_g000023 Rmu_sc0005840.1_g000014 Rmu_sc0006724.1_g000003 Rmu_sc0006824.1_g000005 Rmu_sc0007869.1_g000003 Rmu_sc0007869.1_g000005 Rmu_sc0007869.1_g000008 Rmu_sc0008646.1_g000007 Rmu_sc0009637.1_g000009 Rmu_sc0010500.1_g000002 Rmu_sc0010500.1_g000012 Rmu_sc0012403.1_g000025 Rmu_sc0013768.1_g000025 Rmu_sc0015625.1_g000001 Rmu_sc0019715.1_g000001 Rmu_sc0021133.1_g000002 Rmu_sc0021904.1_g000001 Rmu_sc0021904.1_g000003 Rmu_sc0021904.1_g000004 Rmu_sc0022054.1_g000001 Rmu_sc0026025.1_g000001 Rmu_sc0036828.1_g000002 Rmu_sc0041808.1_g000001 Rmu_ssc0000012.1_g000001
rosa_roxburghii Rroxscaffold_3G00226370 Rroxscaffold_3G00226860 Rroxscaffold_3G00226900 Rroxscaffold_3G00226930 Rroxscaffold_3G00226940 Rroxscaffold_3G00226970 Rroxscaffold_3G00226980 Rroxscaffold_3G00231530 Rroxscaffold_3G00237090 Rroxscaffold_3G00250760 Rroxscaffold_3G00250800
rosa_rugosa Rorug04G0082300 Rorug07G0101800 Rorug07G0102000 Rorug07G0102100 Rorug07G0221200 Rorug07G0245700 Rorug07G0245700 Rorug07G0245700 Rorug07G0263900 Rorug07G0264000 Rorug07G0264000 Rorug07G0264500 Rorug07G0282900 Rorug07G0282900 Rorug07G0283100 Rorug07G0283200.1 Rorug07G0283300 Rorug07G0283900 Rorug07G0284000 Rorug07G0284100 Rorug07G0284300 Rorug07G0284400 Rorug07G0284500 Rorug07G0285000 Rorug07G0285200 Rorug07G0285300 Rorug07G0285500 Rorug07G0286800 Rorug07G0286900 Rorug07G0287100 Rorug07G0287200
rosa_samantha Rh7AG236100 Rh7AG236200 Rh7AG236300 Rh7AG440000 Rh7AG440100 Rh7BG411900 Rh7BG412000 Rh7BG412600 Rh7CG251300 Rh7CG417700 Rh7CG460100 Rh7DG242100 Rh7DG242200 Rh7DG242300 Rh7DG429300
rosa_wichuraiana Rw0G005070 Rw0G010780 Rw0G012530 Rw7G020110 Rw7G020160 Rw7G020170 Rw7G033210 Rw7G033230 Rw7G033250 Rw7G034540 Rw7G035150 Rw7G036190 Rw7G036210 Rw7G036260 Rw7G036270 Rw7G036290 Rw7G036300 Rw7G036310 Rw7G036350 Rw7G036360 Rw7G036440 Rw7G036510 Rw7G036530 Rw7G036570 Rw7G036590 Rw7G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1563
AccI GTMKAC 3 cut(s) 138, 582, 2499
AccII CGCG 1 cut(s) 1751
AciI CCGC 5 cut(s) 675, 899, 1175, 1749, 2274
AclI AACGTT 1 cut(s) 43
AcoI YGGCCR 1 cut(s) 2669
AcsI RAATTY 9 cut(s) 466, 660, 793, 987, 1257, 1272, 1526, 1633, 2399
AcuI CTGAAG 2 cut(s) 55, 251
AcyI GRCGYC 1 cut(s) 1564
AdeI CACNNNGTG 1 cut(s) 58
AfaI GTAC 6 cut(s) 7, 903, 1587, 1719, 1925, 2814
AfiI CCNNNNNNNGG 2 cut(s) 2241, 2674
AflII CTTAAG 1 cut(s) 568
AflIII ACRYGT 4 cut(s) 57, 349, 2107, 2258
AhdI GACNNNNNGTC 1 cut(s) 314
AhlI ACTAGT 2 cut(s) 365, 1655
AjiI CACGTC 1 cut(s) 58
AjnI CCWGG 3 cut(s) 8, 1540, 2464
Alw21I GWGCWC 3 cut(s) 1086, 2576, 2739
Alw26I GTCTC 3 cut(s) 1491, 1725, 2748
Alw44I GTGCAC 1 cut(s) 2572
Ama87I CYCGRG 3 cut(s) 603, 1889, 2831
AoxI GGCC 3 cut(s) 103, 2309, 2669
ApaLI GTGCAC 1 cut(s) 2572
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 9 cut(s) 466, 660, 793, 987, 1257, 1272, 1526, 1633, 2399
ArsI GACNNNNNNTTYG 4 cut(s) 1099, 1131, 2436, 2468
AseI ATTAAT 1 cut(s) 867
Asp700I GAANNNNTTC 6 cut(s) 192, 408, 598, 807, 885, 1257
AspLEI GCGC 2 cut(s) 1566, 2430
AspS9I GGNCC 2 cut(s) 934, 2912
AsuHPI GGTGA 5 cut(s) 619, 860, 2003, 2522, 2809
AsuII TTCGAA 2 cut(s) 889, 1269
AvaI CYCGRG 3 cut(s) 603, 1889, 2831
AvaII GGWCC 2 cut(s) 934, 2912
BaeGI GKGCMC 1 cut(s) 2576
BamHI GGATCC 2 cut(s) 2677, 2827
BanI GGYRCC 1 cut(s) 1563
BanII GRGCYC 2 cut(s) 1086, 2739
BauI CACGAG 1 cut(s) 1475
BbsI GAAGAC 4 cut(s) 223, 257, 307, 1578
Bbv12I GWGCWC 3 cut(s) 1086, 2576, 2739
BbvI GCAGC 1 cut(s) 433
BccI CCATC 7 cut(s) 623, 713, 1388, 1755, 2167, 2441, 2773
BceAI ACGGC 1 cut(s) 563
BcgI CGANNNNNNTGC 2 cut(s) 1495, 1529
BciT130I CCWGG 3 cut(s) 10, 1542, 2466
BclI TGATCA 1 cut(s) 2838
BcoDI GTCTC 3 cut(s) 1491, 1725, 2748
BcuI ACTAGT 2 cut(s) 365, 1655
BfaI CTAG 5 cut(s) 213, 366, 1019, 1656, 1829
BfmI CTRYAG 2 cut(s) 292, 954
BfoI RGCGCY 1 cut(s) 1567
BfrI CTTAAG 1 cut(s) 568
BisI GCNGC 2 cut(s) 447, 1175
BlpI GCTNAGC 1 cut(s) 2738
BlsI GCNGC 2 cut(s) 448, 1176
Bme1390I CCNGG 3 cut(s) 10, 1542, 2466
Bme18I GGWCC 2 cut(s) 934, 2912
BmeRI GACNNNNNGTC 1 cut(s) 314
BmeT110I CYCGRG 3 cut(s) 603, 1889, 2831
BmgBI CACGTC 1 cut(s) 58
BmgT120I GGNCC 2 cut(s) 934, 2912
BmiI GGNNCC 4 cut(s) 777, 1565, 2679, 2829
BmrFI CCNGG 3 cut(s) 10, 1542, 2466
BmrI ACTGGG 1 cut(s) 2817
BmsI GCATC 4 cut(s) 35, 1291, 1433, 1470
BmuI ACTGGG 1 cut(s) 2817
BpiI GAAGAC 4 cut(s) 223, 257, 307, 1578
BplI GAGNNNNNCTC 2 cut(s) 433, 465
BpmI CTGGAG 3 cut(s) 153, 1749, 2024
Bpu1102I GCTNAGC 1 cut(s) 2738
Bpu14I TTCGAA 2 cut(s) 889, 1269
BpuEI CTTGAG 5 cut(s) 85, 1100, 1967, 1988, 2057
BsaBI GATNNNNATC 2 cut(s) 339, 924
BsaHI GRCGYC 1 cut(s) 1564
BsaJI CCNNGG 6 cut(s) 205, 834, 1540, 2043, 2414, 2464
BsaWI WCCGGW 1 cut(s) 473
BsaXI ACNNNNNCTCC 2 cut(s) 2160, 2190
Bsc4I CCNNNNNNNGG 2 cut(s) 2241, 2674
Bse1I ACTGG 6 cut(s) 195, 323, 909, 1732, 2548, 2812
Bse3DI GCAATG 1 cut(s) 2347
Bse8I GATNNNNATC 2 cut(s) 339, 924
BseBI CCWGG 3 cut(s) 10, 1542, 2466
BseDI CCNNGG 6 cut(s) 205, 834, 1540, 2043, 2414, 2464
BseGI GGATG 4 cut(s) 26, 1324, 1399, 2030
BseJI GATNNNNATC 2 cut(s) 339, 924
BseLI CCNNNNNNNGG 2 cut(s) 2241, 2674
BseMI GCAATG 1 cut(s) 2347
BseMII CTCAG 2 cut(s) 1927, 2752
BseNI ACTGG 6 cut(s) 195, 323, 909, 1732, 2548, 2812
BseRI GAGGAG 1 cut(s) 22
BseSI GKGCMC 1 cut(s) 2576
BseXI GCAGC 1 cut(s) 433
Bsh1236I CGCG 1 cut(s) 1751
BshFI GGCC 3 cut(s) 105, 2311, 2671
BshNI GGYRCC 1 cut(s) 1563
BsiHKAI GWGCWC 3 cut(s) 1086, 2576, 2739
BsiHKCI CYCGRG 3 cut(s) 603, 1889, 2831
BsiSI CCGG 2 cut(s) 474, 2668
BslI CCNNNNNNNGG 2 cut(s) 2241, 2674
BsmAI GTCTC 3 cut(s) 1491, 1725, 2748
BsmI GAATGC 1 cut(s) 1876
BsnI GGCC 3 cut(s) 105, 2311, 2671
BsoBI CYCGRG 3 cut(s) 603, 1889, 2831
Bsp119I TTCGAA 2 cut(s) 889, 1269
Bsp1286I GDGCHC 3 cut(s) 1086, 2576, 2739
Bsp1407I TGTACA 1 cut(s) 1717
Bsp1720I GCTNAGC 1 cut(s) 2738
BspACI CCGC 5 cut(s) 675, 899, 1175, 1749, 2274
BspANI GGCC 3 cut(s) 105, 2311, 2671
BspCNI CTCAG 2 cut(s) 1926, 2751
BspFNI CGCG 1 cut(s) 1751
BspLI GGNNCC 4 cut(s) 777, 1565, 2679, 2829
BspT104I TTCGAA 2 cut(s) 889, 1269
BspT107I GGYRCC 1 cut(s) 1563
BspTI CTTAAG 1 cut(s) 568
BsrDI GCAATG 1 cut(s) 2347
BsrGI TGTACA 1 cut(s) 1717
BsrI ACTGG 6 cut(s) 195, 323, 909, 1732, 2548, 2812
BssECI CCNNGG 6 cut(s) 205, 834, 1540, 2043, 2414, 2464
BssNI GRCGYC 1 cut(s) 1564
BssSI CACGAG 1 cut(s) 1475
BssT1I CCWWGG 2 cut(s) 834, 2043
Bst2BI CACGAG 1 cut(s) 1475
Bst2UI CCWGG 3 cut(s) 10, 1542, 2466
Bst6I CTCTTC 3 cut(s) 160, 1682, 2196
BstACI GRCGYC 1 cut(s) 1564
BstAFI CTTAAG 1 cut(s) 568
BstAUI TGTACA 1 cut(s) 1717
BstBI TTCGAA 2 cut(s) 889, 1269
BstC8I GCNNGC 6 cut(s) 1098, 1172, 1179, 1521, 1772, 2000
BstDEI CTNAG 8 cut(s) 161, 546, 625, 1307, 1640, 1694, 1913, 2738
BstF5I GGATG 4 cut(s) 26, 1324, 1399, 2030
BstFNI CGCG 1 cut(s) 1751
BstH2I RGCGCY 1 cut(s) 1567
BstHHI GCGC 2 cut(s) 1566, 2430
BstMAI GTCTC 3 cut(s) 1491, 1725, 2748
BstMWI GCNNNNNNNGC 6 cut(s) 75, 805, 1480, 1699, 1771, 1995
BstNI CCWGG 3 cut(s) 10, 1542, 2466
BstNSI RCATGY 2 cut(s) 353, 1100
BstSCI CCNGG 3 cut(s) 8, 1540, 2464
BstSFI CTRYAG 2 cut(s) 292, 954
BstSLI GKGCMC 1 cut(s) 2576
BstUI CGCG 1 cut(s) 1751
BstV1I GCAGC 1 cut(s) 433
BstV2I GAAGAC 4 cut(s) 223, 257, 307, 1578
BstX2I RGATCY 6 cut(s) 481, 1386, 2077, 2677, 2783, 2827
BstYI RGATCY 6 cut(s) 481, 1386, 2077, 2677, 2783, 2827
BsuRI GGCC 3 cut(s) 105, 2311, 2671
BtrI CACGTC 1 cut(s) 58
BtsCI GGATG 4 cut(s) 26, 1324, 1399, 2030
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 4 cut(s) 119, 492, 1725, 2541
Cac8I GCNNGC 6 cut(s) 1098, 1172, 1179, 1521, 1772, 2000
CfoI GCGC 2 cut(s) 1566, 2430
Cfr13I GGNCC 2 cut(s) 934, 2912
CseI GACGC 4 cut(s) 58, 149, 1583, 2612
Csp6I GTAC 6 cut(s) 6, 902, 1586, 1718, 1924, 2813
CspCI CAANNNNNGTGG 2 cut(s) 819, 854
CviQI GTAC 6 cut(s) 6, 902, 1586, 1718, 1924, 2813
DdeI CTNAG 8 cut(s) 161, 546, 625, 1307, 1640, 1694, 1913, 2738
DinI GGCGCC 1 cut(s) 1565
DraI TTTAAA 1 cut(s) 1210
DraIII CACNNNGTG 1 cut(s) 58
DriI GACNNNNNGTC 1 cut(s) 314
EaeI YGGCCR 1 cut(s) 2669
Eam1104I CTCTTC 3 cut(s) 160, 1682, 2196
Eam1105I GACNNNNNGTC 1 cut(s) 314
EarI CTCTTC 3 cut(s) 160, 1682, 2196
EciI GGCGGA 1 cut(s) 690
Ecl136II GAGCTC 2 cut(s) 1084, 2737
Eco130I CCWWGG 2 cut(s) 834, 2043
Eco24I GRGCYC 2 cut(s) 1086, 2739
Eco32I GATATC 1 cut(s) 820
Eco47I GGWCC 2 cut(s) 934, 2912
Eco53kI GAGCTC 2 cut(s) 1084, 2737
Eco57I CTGAAG 2 cut(s) 55, 251
Eco88I CYCGRG 3 cut(s) 603, 1889, 2831
EcoICRI GAGCTC 2 cut(s) 1084, 2737
EcoRII CCWGG 3 cut(s) 8, 1540, 2464
EcoRV GATATC 1 cut(s) 820
EcoT14I CCWWGG 2 cut(s) 834, 2043
EcoT22I ATGCAT 1 cut(s) 1485
EcoT38I GRGCYC 2 cut(s) 1086, 2739
EgeI GGCGCC 1 cut(s) 1565
EheI GGCGCC 1 cut(s) 1565
ErhI CCWWGG 2 cut(s) 834, 2043
FalI AAGNNNNNCTT 8 cut(s) 792, 824, 870, 902, 1062, 1094, 1269, 1301
FauNDI CATATG 1 cut(s) 2875
FbaI TGATCA 1 cut(s) 2838
FblI GTMKAC 3 cut(s) 138, 582, 2499
Fnu4HI GCNGC 2 cut(s) 447, 1175
FokI GGATG 4 cut(s) 13, 1331, 1406, 2037
FriOI GRGCYC 2 cut(s) 1086, 2739
Fsp4HI GCNGC 2 cut(s) 447, 1175
FspBI CTAG 5 cut(s) 213, 366, 1019, 1656, 1829
GlaI GCGC 2 cut(s) 1565, 2429
GluI GCNGC 2 cut(s) 447, 1175
GsuI CTGGAG 3 cut(s) 153, 1749, 2024
HaeII RGCGCY 1 cut(s) 1567
HaeIII GGCC 3 cut(s) 105, 2311, 2671
HapII CCGG 2 cut(s) 474, 2668
HgaI GACGC 4 cut(s) 58, 149, 1583, 2612
HhaI GCGC 2 cut(s) 1566, 2430
Hin1I GRCGYC 1 cut(s) 1564
Hin6I GCGC 2 cut(s) 1564, 2428
HinP1I GCGC 2 cut(s) 1564, 2428
HincII GTYRAC 3 cut(s) 139, 2500, 2565
HindII GTYRAC 3 cut(s) 139, 2500, 2565
HindIII AAGCTT 5 cut(s) 406, 459, 806, 1283, 1294
HpaII CCGG 2 cut(s) 474, 2668
HphI GGTGA 5 cut(s) 619, 860, 2003, 2522, 2809
Hpy166II GTNNAC 9 cut(s) 139, 583, 934, 1586, 1718, 2490, 2500, 2565, 2574
Hpy8I GTNNAC 9 cut(s) 139, 583, 934, 1586, 1718, 2490, 2500, 2565, 2574
Hpy99I CGWCG 3 cut(s) 59, 83, 143
HpyAV CCTTC 6 cut(s) 354, 1057, 1445, 1613, 2310, 2420
HpyCH4IV ACGT 4 cut(s) 43, 57, 2109, 2260
HpyF10VI GCNNNNNNNGC 6 cut(s) 75, 805, 1480, 1699, 1771, 1995
HpyF3I CTNAG 8 cut(s) 161, 546, 625, 1307, 1640, 1694, 1913, 2738
HpySE526I ACGT 4 cut(s) 43, 57, 2109, 2260
Hsp92I GRCGYC 1 cut(s) 1564
HspAI GCGC 2 cut(s) 1564, 2428
KasI GGCGCC 1 cut(s) 1563
Ksp22I TGATCA 1 cut(s) 2838
LmnI GCTCC 3 cut(s) 271, 1707, 2734
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 4 cut(s) 35, 1291, 1433, 1470
MaeI CTAG 5 cut(s) 213, 366, 1019, 1656, 1829
MaeII ACGT 4 cut(s) 43, 57, 2109, 2260
MaeIII GTNAC 4 cut(s) 962, 1157, 1378, 1450
MfeI CAATTG 1 cut(s) 1546
MflI RGATCY 6 cut(s) 481, 1386, 2077, 2677, 2783, 2827
MhlI GDGCHC 3 cut(s) 1086, 2576, 2739
Mly113I GGCGCC 1 cut(s) 1564
MlyI GAGTC 7 cut(s) 144, 959, 1617, 2526, 2750, 2873, 2926
MmeI TCCRAC 5 cut(s) 26, 571, 637, 1230, 1729
Mph1103I ATGCAT 1 cut(s) 1485
MroXI GAANNNNTTC 6 cut(s) 192, 408, 598, 807, 885, 1257
MslI CAYNNNNRTG 1 cut(s) 1361
MspCI CTTAAG 1 cut(s) 568
MspI CCGG 2 cut(s) 474, 2668
MspR9I CCNGG 3 cut(s) 10, 1542, 2466
MunI CAATTG 1 cut(s) 1546
Mva1269I GAATGC 1 cut(s) 1876
MvaI CCWGG 3 cut(s) 10, 1542, 2466
MvnI CGCG 1 cut(s) 1751
MwoI GCNNNNNNNGC 6 cut(s) 75, 805, 1480, 1699, 1771, 1995
NarI GGCGCC 1 cut(s) 1564
NdeI CATATG 1 cut(s) 2875
NlaIV GGNNCC 4 cut(s) 777, 1565, 2679, 2829
NmuCI GTSAC 2 cut(s) 962, 1378
NsiI ATGCAT 1 cut(s) 1485
NspI RCATGY 2 cut(s) 353, 1100
NspV TTCGAA 2 cut(s) 889, 1269
PaeI GCATGC 1 cut(s) 1100
PaeR7I CTCGAG 1 cut(s) 1889
PciI ACATGT 1 cut(s) 349
PctI GAATGC 1 cut(s) 1876
PdmI GAANNNNTTC 6 cut(s) 192, 408, 598, 807, 885, 1257
PfeI GAWTC 8 cut(s) 251, 599, 1779, 1903, 1909, 2008, 2419, 2638
PflFI GACNNNGTC 1 cut(s) 2916
PkrI GCNGC 2 cut(s) 448, 1176
PleI GAGTC 7 cut(s) 143, 959, 1617, 2525, 2750, 2872, 2925
PluTI GGCGCC 1 cut(s) 1567
PpsI GAGTC 7 cut(s) 143, 959, 1617, 2525, 2750, 2872, 2925
PscI ACATGT 1 cut(s) 349
PshBI ATTAAT 1 cut(s) 867
Psp124BI GAGCTC 2 cut(s) 1086, 2739
Psp1406I AACGTT 1 cut(s) 43
Psp6I CCWGG 3 cut(s) 8, 1540, 2464
PspGI CCWGG 3 cut(s) 8, 1540, 2464
PspN4I GGNNCC 4 cut(s) 777, 1565, 2679, 2829
PspPI GGNCC 2 cut(s) 934, 2912
PsuI RGATCY 6 cut(s) 481, 1386, 2077, 2677, 2783, 2827
PsyI GACNNNGTC 1 cut(s) 2916
RsaI GTAC 6 cut(s) 7, 903, 1587, 1719, 1925, 2814
RsaNI GTAC 6 cut(s) 6, 902, 1586, 1718, 1924, 2813
RseI CAYNNNNRTG 1 cut(s) 1361
SacI GAGCTC 2 cut(s) 1086, 2739
SalI GTCGAC 2 cut(s) 137, 2498
SatI GCNGC 2 cut(s) 447, 1175
Sau96I GGNCC 2 cut(s) 934, 2912
SchI GAGTC 7 cut(s) 144, 959, 1617, 2526, 2750, 2873, 2926
ScrFI CCNGG 3 cut(s) 10, 1542, 2466
SduI GDGCHC 3 cut(s) 1086, 2576, 2739
SfaNI GCATC 4 cut(s) 35, 1291, 1433, 1470
SfcI CTRYAG 2 cut(s) 292, 954
SfoI GGCGCC 1 cut(s) 1565
Sfr274I CTCGAG 1 cut(s) 1889
SfuI TTCGAA 2 cut(s) 889, 1269
SinI GGWCC 2 cut(s) 934, 2912
SlaI CTCGAG 1 cut(s) 1889
SmiMI CAYNNNNRTG 1 cut(s) 1361
SmlI CTYRAG 7 cut(s) 64, 568, 1079, 1889, 1967, 1982, 2072
SmoI CTYRAG 7 cut(s) 64, 568, 1079, 1889, 1967, 1982, 2072
SpeI ACTAGT 2 cut(s) 365, 1655
SphI GCATGC 1 cut(s) 1100
SsiI CCGC 5 cut(s) 675, 899, 1175, 1749, 2274
SspDI GGCGCC 1 cut(s) 1563
SspI AATATT 1 cut(s) 1332
SspMI CTAG 5 cut(s) 213, 366, 1019, 1656, 1829
SstI GAGCTC 2 cut(s) 1086, 2739
StyD4I CCNGG 3 cut(s) 8, 1540, 2464
StyI CCWWGG 2 cut(s) 834, 2043
TaiI ACGT 4 cut(s) 46, 60, 2112, 2263
TaqII GACCGA 1 cut(s) 2929
TatI WGTACW 2 cut(s) 1585, 1717
TauI GCSGC 1 cut(s) 1177
TfiI GAWTC 8 cut(s) 251, 599, 1779, 1903, 1909, 2008, 2419, 2638
TscAI CASTG 4 cut(s) 126, 499, 1732, 2548
TseFI GTSAC 2 cut(s) 962, 1378
TseI GCWGC 1 cut(s) 446
Tsp45I GTSAC 2 cut(s) 962, 1378
TspGWI ACGGA 4 cut(s) 470, 1622, 2008, 2293
TspRI CASTG 4 cut(s) 126, 499, 1732, 2548
Tth111I GACNNNGTC 1 cut(s) 2916
Vha464I CTTAAG 1 cut(s) 568
VneI GTGCAC 1 cut(s) 2572
VpaK11BI GGWCC 2 cut(s) 934, 2912
VspI ATTAAT 1 cut(s) 867
XapI RAATTY 9 cut(s) 466, 660, 793, 987, 1257, 1272, 1526, 1633, 2399
XceI RCATGY 2 cut(s) 353, 1100
XhoI CTCGAG 1 cut(s) 1889
XmiI GTMKAC 3 cut(s) 138, 582, 2499
XmnI GAANNNNTTC 6 cut(s) 192, 408, 598, 807, 885, 1257
XspI CTAG 5 cut(s) 213, 366, 1019, 1656, 1829
Zsp2I ATGCAT 1 cut(s) 1485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.