MD02G1053600.v1.1

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
4365499 .. 4370115
4617 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1053600.v1.1.491

Sequence Viewer

Length: 2406 bp
ATGACAACCCACGAAGCCTCCTCTTCATCCTCCTCCAAGTCAACACTTTGGAATTACGACGTGTTCTTGAGCTTCAGTGGTGTAGACACACGCAATGGTTTCACGGGCCACCTCCACGCGGCATTAACAGACAGGGGATACCAGGCTTATATTGATGAGGACAATCTAGAAAGAGGGGAAGAAATAAAAGAGGAACTGTTCCGGGCAATCGAAGAGGCGAGGATCTCTATCATTGTCTTCTCAAAGAGTTATGCGGACTCTCGTTGGTGTCTTGATGAGCTGGTGAAGATCATGGAGTGCAGATACAAACTGGGGCGACGTGTTTTGCCAATATTCTATCATGTTGATCCTACACATGTTAGGAAGCAGAACGGAGATTTAGCTCAAGCATTTCAGAAGCACGAAGAGGGCATCCGTGAAGAAAAAGATGACAAGGAACGTGAAACTAAACAAGAAAGGGTAAAGCAATGGAGAAAGGCTCTTACAGAAGCAGCAAATTTGTCTGGCCAACATCTCCAAATCACTGACAATGCGCCCGAAGCAAAGCTTATTAGAGAAATTGTTGGCAAGATCATTCCGGAATGGCTTCCAAGCGCAAACGAATTAAATGTGGCCAAGCACCCGGTTGGAATCAATTCTCGCATTCAAGATATTATCAATCATCTTTCAAGTGGTGGATCAAATGACGTTGTCATGGTTGGAATTTGGGGGATGGGTGGATTGGGTAAAACAACAGCTGCCAAAGCCATTTATAACCAAATTCATCATAAGTTCCAATTCAAAAGTTTCCTTGCCAACGTTAGTGAATATGATCTGGTTGATTTGCAAGGAAAACTTGTTTCTGACATCTTGAAACAGACTGAGTCTAAGATAACCAGTGTTGATCGAGGTATGAGTCTGATAAAAAATCATCTCCAACGTAGAAGCGTACTTGTCATTATTGACAATGTAGACAAAGTGGAACAACTAAATGCAATAGCTGGAAATCGTGATTGGTTTGGCCCAGGAAGTAGAATTATCATAACGACACGAGATGAACGTTTACTAAAGCAAGTGAACATGACAGTGGACAAGACATATCCGCTTAAGGAAATGATTGAAGAAGAAGCTCTGAAGCTCTTTAGTTGGCATGCCTTTGGAAATAGTTGGCCTAATGAAGGATATCTTGAACTCTCAAAAGAGGTTGTTTCTTACTGTGGTGGTTTGCCACTAGCCCTTGAAGTTTTAGGTTCTTCTATGATTGAAAGAACCCCAACAGAGTGGAAAAGTCAGTTGGAGAAATTGAAAAAAATTCCTGATGAGGGAATAATGAAAGCGCTAAGAGTAAGCTTTGAAAGGCTAGATCCTACACAGAAGGATATATTCCTTGACATATCTTGTTTCTTTATTGGATGGGATAAGGACCATGTCGCAAAAATATTAGATGGGTGTAAATTTTATGCAACAGCAGGAATTTGTGATCTCCGTGAACGATGCCTTATAACTGTTGAAGACAACAAGTTGAATATGCATGATTTGCTTCGAGAAATGGCCAAAGTAATCATATCTGGAAATTCCCGTCGTCCCCCTGGAGAATGGAGCAGGTTGTGGATCCCTGGAGATGTCTATGATGTACTAACAAATAAATCTGGAACCAAAGAAGTTGAAGGACTTGTTGTAGGTTTCCCTGATCTTCTGTCTCCAAGTATCAGTACAGAAGCATTTGCCGATACGTGGCAACTGATACTGTTCCAGCGCATTAAAGTGCAGCTCCATGGAGAATTCCCTTTAAAGTCTAGTTGTATCAGTACAGAAGCATTTGCTAATATGAAGAAACTGAGACTGCTCATGCTCAAGAACGTGCAGCTCAATGGAGAATACAAACATCTCCCCAAAGAGTTAATATGGTTGTGTTGGGAAGGATGCCCTTTAAAGTCCATACCAGATGACTTCTTTGATCAACCAAGAGCACTAGTTATTTTAGAGATAACGCACAGCAGACTGGTACAAGTTTGGGAGGGCTCCAAGTTGCTTGAAAACTTGAAAATCCTTAATCTCAGTGTTTGCCTTGACTTAAAAAAATCACCAGACTTATCAAATCTCCCAAGTCTTGAAGAGTTGATATTGGAATGGTGTGAGAGTTTGTCCGAGATTCACCCCTCCATTGGTCATCTTAAAAAACTTTCTTTGGTGAACCTCACAGGCTGCAAGAATCTTATTTCTCTTCCTGGGGATTTCTACAGGTCCAAATCCGTTCAGACTCTTGTTCTTGATTTTTGTGGGCAATTCAGTGAACTGTCCGAGGATTTAGGGAATATAATATCATTGAGAGTACTTAAAGCATCTGAGACAGCCATAATACAAGTACCGCGTTCCACAAAGAGCCAAATTTGCATTGCAAATTCGCGATTTGTTACAGGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

802

Amino Acids

90.79

Weight (kDa)

6.25

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 18 - 198 3.2e-49 TIR domain
TIR_2 PF13676 21 - 128 1.9e-17 TIR domain
NB-ARC PF00931 214 - 380 6.2e-20 NB-ARC domain
WHD_ROQ1 PF23282 451 - 516 8.4e-11 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36930 AT5G36930 AT5G36930 AT5G36930
fragaria_vesca FvH4_3g45361 FvH4_3g45380 FvH4_5g21061 FvH4_5g21062 FvH4_5g21063 FvH4_5g32050 FvH4_5g32970 FvH4_5g32990 FvH4_5g34190 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34211 FvH4_5g34240 FvH4_5g34250
malus_domestica MD00G1011700.v1.1 MD00G1026100.v1.1 MD00G1026500.v1.1 MD00G1027000.v1.1 MD00G1027100.v1.1 MD00G1027700.v1.1 MD00G1027800.v1.1 MD00G1028000.v1.1 MD00G1220000.v1.1 MD02G1024400.v1.1 MD02G1024800.v1.1 MD02G1026000.v1.1 MD02G1026100.v1.1 MD02G1031800.v1.1 MD02G1038500.v1.1 MD02G1038700.v1.1 MD02G1039200.v1.1 MD02G1040600.v1.1 MD02G1040900.v1.1 MD02G1041200.v1.1 MD02G1041300.v1.1 MD02G1041700.v1.1 MD02G1042000.v1.1 MD02G1043800.v1.1 MD02G1043900.v1.1 MD02G1044300.v1.1 MD02G1045200.v1.1 MD02G1045300.v1.1 MD02G1051200.v1.1 MD02G1052200.v1.1 MD02G1052800.v1.1 MD02G1053100.v1.1 MD02G1053600.v1.1 MD02G1055500.v1.1 MD02G1063300.v1.1 MD02G1063400.v1.1 MD02G1063800.v1.1 MD02G1306500.v1.1 MD02G1306600.v1.1 MD02G1306700.v1.1 MD02G1306900.v1.1 MD02G1307200.v1.1 MD04G1011700.v1.1 MD05G1315400.v1.1 MD05G1316000.v1.1 MD05G1316700.v1.1 MD05G1317000.v1.1 MD05G1317300.v1.1 MD05G1317600.v1.1 MD05G1317700.v1.1 MD07G1102800.v1.1 MD07G1238200.v1.1 MD08G1175900.v1.1 MD08G1203600.v1.1 MD09G1024200.v1.1 MD09G1039600.v1.1 MD09G1044800.v1.1 MD09G1045100.v1.1 MD10G1038700.v1.1 MD10G1039000.v1.1 MD10G1039200.v1.1 MD10G1040000.v1.1 MD10G1040200.v1.1 MD10G1040600.v1.1 MD10G1040800.v1.1 MD10G1297300.v1.1 MD12G1247500.v1.1 MD12G1247900.v1.1 MD12G1248300.v1.1 MD12G1248800.v1.1 MD15G1103700.v1.1 MD15G1103800.v1.1 MD15G1104000.v1.1 MD15G1179600.v1.1 MD15G1182500.v1.1 MD16G1068200.v1.1 MD16G1068300.v1.1 MD17G1024600.v1.1 MD17G1024700.v1.1 MD17G1025000.v1.1 MD17G1025900.v1.1
prunus_persica Prupe.1G539800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G557100_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557300_v2.0.a1
pyrus_communis pycom02g02080 pycom02g02090 pycom02g02110 pycom02g03220 pycom02g03260 pycom02g03370 pycom02g03390 pycom02g03410 pycom02g03420 pycom02g03450 pycom02g03500 pycom02g03730 pycom02g03770 pycom02g04400 pycom02g04410 pycom02g04430 pycom02g04450 pycom02g04460 pycom02g04490 pycom02g05200 pycom02g25710 pycom02g25750 pycom02g25790 pycom02g25810 pycom02g25830 pycom04g00920 pycom04g00930 pycom04g00940 pycom05g29300 pycom05g29310 pycom05g29380 pycom05g29410 pycom07g06310 pycom07g21420 pycom08g15070 pycom08g17540 pycom08g17560 pycom08g17570 pycom10g02670 pycom10g02680 pycom10g02700 pycom10g02770 pycom10g02790 pycom10g02800 pycom10g02810 pycom10g25020 pycom10g25030 pycom10g25050 pycom10g25080 pycom111g01990 pycom111g02000 pycom111g02030 pycom111g02040 pycom111g02050 pycom111g02060 pycom12g22710 pycom12g22720 pycom12g22730 pycom12g22740 pycom12g22750 pycom12g22770 pycom12g22780 pycom12g22790 pycom12g22800 pycom12g22810 pycom12g22830 pycom12g22840 pycom12g22860 pycom15g09440 pycom15g09480 pycom15g16120 pycom15g32380 pycom16g05970 pycom17g02100
rosa_chinensis RchiOBHm_Chr2g0144661 RchiOBHm_Chr4g0407491 RchiOBHm_Chr4g0407501 RchiOBHm_Chr4g0412381 RchiOBHm_Chr7g0208191 RchiOBHm_Chr7g0208201 RchiOBHm_Chr7g0208211 RchiOBHm_Chr7g0208221 RchiOBHm_Chr7g0228071 RchiOBHm_Chr7g0228121 RchiOBHm_Chr7g0230971 RchiOBHm_Chr7g0230981 RchiOBHm_Chr7g0233901 RchiOBHm_Chr7g0233951 RchiOBHm_Chr7g0233961 RchiOBHm_Chr7g0233991 RchiOBHm_Chr7g0234021 RchiOBHm_Chr7g0234151 RchiOBHm_Chr7g0234161 RchiOBHm_Chr7g0234241 RchiOBHm_Chr7g0234501 RchiOBHm_Chr7g0234641 RchiOBHm_Chr7g0234771 RchiOBHm_Chr7g0234781 RchiOBHm_Chr7g0234991 RchiOBHm_Chr7g0241291 RchiOBHm_Chr7g0241301
rosa_laevigata RLG00000001186 RLG00000001187 RLG00000001212 RLG00000001226 RLG00000001233 RLG00000001590 RLG00000003242 RLG00000003243 RLG00000003249 RLG00000008688 RLG00000008690
rosa_multiflora Rmu_co7966574.1_g000001 Rmu_co8120830.1_g000001 Rmu_co8142226.1_g000001 Rmu_co8293083.1_g000001 Rmu_co8351227.1_g000001 Rmu_co8380159.1_g000001 Rmu_co8456505.1_g000001 Rmu_sc0000676.1_g000025 Rmu_sc0000706.1_g000018 Rmu_sc0000706.1_g000040 Rmu_sc0000740.1_g000029 Rmu_sc0000740.1_g000032 Rmu_sc0000740.1_g000037 Rmu_sc0000740.1_g000040 Rmu_sc0000762.1_g000003 Rmu_sc0000762.1_g000019 Rmu_sc0000762.1_g000034 Rmu_sc0000762.1_g000069 Rmu_sc0000892.1_g000001 Rmu_sc0000945.1_g000040 Rmu_sc0001913.1_g000037 Rmu_sc0001913.1_g000041 Rmu_sc0001913.1_g000049 Rmu_sc0002775.1_g000017 Rmu_sc0002775.1_g000018 Rmu_sc0002775.1_g000020 Rmu_sc0002775.1_g000021 Rmu_sc0002775.1_g000022 Rmu_sc0002775.1_g000025 Rmu_sc0002775.1_g000026 Rmu_sc0002775.1_g000028 Rmu_sc0002775.1_g000030 Rmu_sc0004858.1_g000002 Rmu_sc0004864.1_g000022 Rmu_sc0005038.1_g000023 Rmu_sc0005840.1_g000014 Rmu_sc0006724.1_g000003 Rmu_sc0006824.1_g000005 Rmu_sc0007869.1_g000003 Rmu_sc0007869.1_g000005 Rmu_sc0007869.1_g000008 Rmu_sc0008646.1_g000007 Rmu_sc0009637.1_g000009 Rmu_sc0010500.1_g000002 Rmu_sc0010500.1_g000012 Rmu_sc0012403.1_g000025 Rmu_sc0013768.1_g000025 Rmu_sc0015625.1_g000001 Rmu_sc0019715.1_g000001 Rmu_sc0021133.1_g000002 Rmu_sc0021904.1_g000001 Rmu_sc0021904.1_g000003 Rmu_sc0021904.1_g000004 Rmu_sc0022054.1_g000001 Rmu_sc0026025.1_g000001 Rmu_sc0036828.1_g000002 Rmu_sc0041808.1_g000001 Rmu_ssc0000012.1_g000001
rosa_roxburghii Rroxscaffold_3G00226370 Rroxscaffold_3G00226860 Rroxscaffold_3G00226900 Rroxscaffold_3G00226930 Rroxscaffold_3G00226940 Rroxscaffold_3G00226970 Rroxscaffold_3G00226980 Rroxscaffold_3G00231530 Rroxscaffold_3G00237090 Rroxscaffold_3G00250760 Rroxscaffold_3G00250800
rosa_rugosa Rorug04G0082300 Rorug07G0101800 Rorug07G0102000 Rorug07G0102100 Rorug07G0221200 Rorug07G0245700 Rorug07G0245700 Rorug07G0245700 Rorug07G0263900 Rorug07G0264000 Rorug07G0264000 Rorug07G0264500 Rorug07G0282900 Rorug07G0282900 Rorug07G0283100 Rorug07G0283200.1 Rorug07G0283300 Rorug07G0283900 Rorug07G0284000 Rorug07G0284100 Rorug07G0284300 Rorug07G0284400 Rorug07G0284500 Rorug07G0285000 Rorug07G0285200 Rorug07G0285300 Rorug07G0285500 Rorug07G0286800 Rorug07G0286900 Rorug07G0287100 Rorug07G0287200
rosa_samantha Rh7AG236100 Rh7AG236200 Rh7AG236300 Rh7AG440000 Rh7AG440100 Rh7BG411900 Rh7BG412000 Rh7BG412600 Rh7CG251300 Rh7CG417700 Rh7CG460100 Rh7DG242100 Rh7DG242200 Rh7DG242300 Rh7DG429300
rosa_wichuraiana Rw0G005070 Rw0G010780 Rw0G012530 Rw7G020110 Rw7G020160 Rw7G020170 Rw7G033210 Rw7G033230 Rw7G033250 Rw7G034540 Rw7G035150 Rw7G036190 Rw7G036210 Rw7G036260 Rw7G036270 Rw7G036290 Rw7G036300 Rw7G036310 Rw7G036350 Rw7G036360 Rw7G036440 Rw7G036510 Rw7G036530 Rw7G036570 Rw7G036590 Rw7G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 753, 1481
Acc36I ACCTGC 1 cut(s) 1572
AccI GTMKAC 2 cut(s) 84, 951
AccII CGCG 3 cut(s) 119, 2350, 2386
AccIII TCCGGA 1 cut(s) 577
AciI CCGC 4 cut(s) 119, 254, 1082, 2348
AclI AACGTT 2 cut(s) 798, 1039
AclWI GGATC 6 cut(s) 230, 341, 685, 1337, 1585, 1598
AcoI YGGCCR 3 cut(s) 505, 612, 1530
AcuI CTGAAG 2 cut(s) 58, 1133
AfaI GTAC 7 cut(s) 930, 1614, 1693, 1789, 1986, 2313, 2346
AfeI AGCGCT 1 cut(s) 1317
AfiI CCNNNNNNNGG 5 cut(s) 118, 1157, 1301, 1713, 2144
AflII CTTAAG 1 cut(s) 1085
AflIII ACRYGT 3 cut(s) 60, 319, 355
AhlI ACTAGT 1 cut(s) 1951
AjiI CACGTC 2 cut(s) 61, 320
AjnI CCWGG 5 cut(s) 141, 1003, 1567, 1594, 2206
AjuI GAANNNNNNNTTGG 4 cut(s) 976, 1008, 1256, 1288
Alw21I GWGCWC 1 cut(s) 1951
Alw26I GTCTC 3 cut(s) 1683, 1813, 2321
AlwI GGATC 6 cut(s) 230, 341, 685, 1337, 1585, 1598
Aor13HI TCCGGA 1 cut(s) 577
Aor51HI AGCGCT 1 cut(s) 1317
AoxI GGCC 6 cut(s) 106, 505, 612, 1000, 1148, 1530
ApeKI GCWGC 5 cut(s) 491, 737, 1747, 1843, 2184
Asp700I GAANNNNTTC 2 cut(s) 585, 634
AspLEI GCGC 4 cut(s) 535, 596, 1318, 1737
AspS9I GGNCC 4 cut(s) 106, 1001, 1402, 2223
AsuC2I CCSGG 2 cut(s) 203, 623
AsuHPI GGTGA 4 cut(s) 295, 2055, 2126, 2182
AvaII GGWCC 2 cut(s) 1402, 2223
BalI TGGCCA 3 cut(s) 507, 614, 1532
BamHI GGATCC 1 cut(s) 1590
BanII GRGCYC 1 cut(s) 2003
BauI CACGAG 1 cut(s) 1029
BbsI GAAGAC 2 cut(s) 229, 1497
Bbv12I GWGCWC 1 cut(s) 1951
BbvI GCAGC 5 cut(s) 503, 724, 1759, 1855, 2171
BccI CCATC 3 cut(s) 706, 1386, 1418
BciT130I CCWGG 5 cut(s) 143, 1005, 1569, 1596, 2208
BciVI GTATCC 1 cut(s) 131
BclI TGATCA 1 cut(s) 1936
BcnI CCSGG 2 cut(s) 203, 623
BcoDI GTCTC 3 cut(s) 1683, 1813, 2321
BcuI ACTAGT 1 cut(s) 1951
BfaI CTAG 5 cut(s) 167, 1211, 1340, 1776, 1952
BfmI CTRYAG 1 cut(s) 2218
BfoI RGCGCY 1 cut(s) 1319
BfrI CTTAAG 1 cut(s) 1085
BfuAI ACCTGC 1 cut(s) 1572
BfuI GTATCC 1 cut(s) 131
BisI GCNGC 6 cut(s) 120, 492, 738, 1748, 1844, 2185
BlsI GCNGC 6 cut(s) 121, 493, 739, 1749, 1845, 2186
BmcAI AGTACT 1 cut(s) 2313
Bme1390I CCNGG 7 cut(s) 143, 203, 623, 1005, 1569, 1596, 2208
Bme18I GGWCC 2 cut(s) 1402, 2223
BmgBI CACGTC 2 cut(s) 61, 320
BmgT120I GGNCC 4 cut(s) 106, 1001, 1402, 2223
BmiI GGNNCC 3 cut(s) 1592, 1633, 2002
BmrFI CCNGG 7 cut(s) 143, 203, 623, 1005, 1569, 1596, 2208
BmrI ACTGGG 1 cut(s) 320
BmsI GCATC 4 cut(s) 420, 1463, 1892, 2330
BmuI ACTGGG 1 cut(s) 320
BpiI GAAGAC 2 cut(s) 229, 1497
BplI GAGNNNNNCTC 2 cut(s) 463, 495
BpmI CTGGAG 2 cut(s) 1590, 1617
BpuEI CTTGAG 3 cut(s) 88, 369, 1817
BpuMI CCSGG 2 cut(s) 203, 623
BsaAI YACGTR 1 cut(s) 1713
BsaBI GATNNNNATC 1 cut(s) 227
BsaJI CCNNGG 6 cut(s) 1003, 1567, 1594, 1753, 2207, 2280
BsaWI WCCGGW 1 cut(s) 577
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 5 cut(s) 118, 1157, 1301, 1713, 2144
Bse1I ACTGG 3 cut(s) 315, 876, 1986
Bse3DI GCAATG 3 cut(s) 100, 473, 2373
Bse8I GATNNNNATC 1 cut(s) 227
BseAI TCCGGA 1 cut(s) 577
BseBI CCWGG 5 cut(s) 143, 1005, 1569, 1596, 2208
BseDI CCNNGG 6 cut(s) 1003, 1567, 1594, 1753, 2207, 2280
BseGI GGATG 5 cut(s) 26, 411, 717, 1397, 1907
BseJI GATNNNNATC 1 cut(s) 227
BseLI CCNNNNNNNGG 5 cut(s) 118, 1157, 1301, 1713, 2144
BseMI GCAATG 3 cut(s) 100, 473, 2373
BseMII CTCAG 4 cut(s) 852, 1808, 2050, 2316
BseNI ACTGG 3 cut(s) 315, 876, 1986
BseRI GAGGAG 2 cut(s) 10, 22
BseXI GCAGC 5 cut(s) 503, 724, 1759, 1855, 2171
BsgI GTGCAG 3 cut(s) 319, 1766, 1862
Bsh1236I CGCG 3 cut(s) 119, 2350, 2386
BshFI GGCC 6 cut(s) 108, 507, 614, 1002, 1150, 1532
BsiHKAI GWGCWC 1 cut(s) 1951
BsiSI CCGG 3 cut(s) 202, 578, 623
BslFI GGGAC 1 cut(s) 1548
BslI CCNNNNNNNGG 5 cut(s) 118, 1157, 1301, 1713, 2144
BsmAI GTCTC 3 cut(s) 1683, 1813, 2321
BsmFI GGGAC 1 cut(s) 1548
BsmI GAATGC 1 cut(s) 642
BsnI GGCC 6 cut(s) 108, 507, 614, 1002, 1150, 1532
Bsp1286I GDGCHC 2 cut(s) 1951, 2003
Bsp13I TCCGGA 1 cut(s) 577
Bsp19I CCATGG 1 cut(s) 1753
Bsp68I TCGCGA 1 cut(s) 2386
BspACI CCGC 4 cut(s) 119, 254, 1082, 2348
BspANI GGCC 6 cut(s) 108, 507, 614, 1002, 1150, 1532
BspCNI CTCAG 4 cut(s) 853, 1809, 2049, 2317
BspEI TCCGGA 1 cut(s) 577
BspFNI CGCG 3 cut(s) 119, 2350, 2386
BspLI GGNNCC 3 cut(s) 1592, 1633, 2002
BspMI ACCTGC 1 cut(s) 1572
BspPI GGATC 6 cut(s) 230, 341, 685, 1337, 1585, 1598
BspTI CTTAAG 1 cut(s) 1085
BsrDI GCAATG 3 cut(s) 100, 473, 2373
BsrI ACTGG 3 cut(s) 315, 876, 1986
BssECI CCNNGG 6 cut(s) 1003, 1567, 1594, 1753, 2207, 2280
BssSI CACGAG 1 cut(s) 1029
BssT1I CCWWGG 1 cut(s) 1753
Bst2BI CACGAG 1 cut(s) 1029
Bst2UI CCWGG 5 cut(s) 143, 1005, 1569, 1596, 2208
Bst4CI ACNGT 6 cut(s) 198, 1066, 1196, 1486, 1728, 2277
Bst6I CTCTTC 5 cut(s) 28, 207, 399, 2088, 2208
BstAFI CTTAAG 1 cut(s) 1085
BstAPI GCANNNNNTGC 1 cut(s) 1516
BstBAI YACGTR 1 cut(s) 1713
BstC8I GCNNGC 1 cut(s) 1131
BstDEI CTNAG 6 cut(s) 861, 867, 1319, 1817, 2036, 2325
BstDSI CCRYGG 1 cut(s) 1753
BstENI CCTNNNNNAGG 1 cut(s) 1155
BstF5I GGATG 5 cut(s) 26, 411, 717, 1397, 1907
BstFNI CGCG 3 cut(s) 119, 2350, 2386
BstH2I RGCGCY 1 cut(s) 1319
BstHHI GCGC 4 cut(s) 535, 596, 1318, 1737
BstMAI GTCTC 3 cut(s) 1683, 1813, 2321
BstMWI GCNNNNNNNGC 4 cut(s) 539, 743, 1516, 2370
BstNI CCWGG 5 cut(s) 143, 1005, 1569, 1596, 2208
BstNSI RCATGY 2 cut(s) 359, 1133
BstSCI CCNGG 7 cut(s) 141, 201, 621, 1003, 1567, 1594, 2206
BstSFI CTRYAG 1 cut(s) 2218
BstUI CGCG 3 cut(s) 119, 2350, 2386
BstV1I GCAGC 5 cut(s) 503, 724, 1759, 1855, 2171
BstV2I GAAGAC 2 cut(s) 229, 1497
BstX2I RGATCY 3 cut(s) 222, 1342, 1590
BstXI CCANNNNNNTGG 1 cut(s) 1260
BstYI RGATCY 3 cut(s) 222, 1342, 1590
BsuI GTATCC 1 cut(s) 131
BsuRI GGCC 6 cut(s) 108, 507, 614, 1002, 1150, 1532
BtgI CCRYGG 1 cut(s) 1753
BtrI CACGTC 2 cut(s) 61, 320
BtsCI GGATG 5 cut(s) 26, 411, 717, 1397, 1907
BtsIMutI CAGTG 6 cut(s) 82, 522, 883, 1071, 2044, 2275
BtuMI TCGCGA 1 cut(s) 2386
BveI ACCTGC 1 cut(s) 1572
Cac8I GCNNGC 1 cut(s) 1131
CfoI GCGC 4 cut(s) 535, 596, 1318, 1737
Cfr13I GGNCC 4 cut(s) 106, 1001, 1402, 2223
Csp6I GTAC 7 cut(s) 929, 1613, 1692, 1788, 1985, 2312, 2345
CviQI GTAC 7 cut(s) 929, 1613, 1692, 1788, 1985, 2312, 2345
DdeI CTNAG 6 cut(s) 861, 867, 1319, 1817, 2036, 2325
DraI TTTAAA 2 cut(s) 1770, 1911
EaeI YGGCCR 3 cut(s) 505, 612, 1530
Eam1104I CTCTTC 5 cut(s) 28, 207, 399, 2088, 2208
EarI CTCTTC 5 cut(s) 28, 207, 399, 2088, 2208
Eco130I CCWWGG 1 cut(s) 1753
Eco24I GRGCYC 1 cut(s) 2003
Eco32I GATATC 1 cut(s) 1163
Eco47I GGWCC 2 cut(s) 1402, 2223
Eco47III AGCGCT 1 cut(s) 1317
Eco57I CTGAAG 2 cut(s) 58, 1133
EcoNI CCTNNNNNAGG 1 cut(s) 1155
EcoRI GAATTC 1 cut(s) 1760
EcoRII CCWGG 5 cut(s) 141, 1003, 1567, 1594, 2206
EcoRV GATATC 1 cut(s) 1163
EcoT14I CCWWGG 1 cut(s) 1753
EcoT22I ATGCAT 1 cut(s) 1512
EcoT38I GRGCYC 1 cut(s) 2003
ErhI CCWWGG 1 cut(s) 1753
FalI AAGNNNNNCTT 6 cut(s) 531, 563, 819, 851, 1149, 1181
FaqI GGGAC 1 cut(s) 1548
FbaI TGATCA 1 cut(s) 1936
FblI GTMKAC 2 cut(s) 84, 951
Fnu4HI GCNGC 6 cut(s) 120, 492, 738, 1748, 1844, 2185
FokI GGATG 5 cut(s) 13, 398, 724, 1404, 1914
FriOI GRGCYC 1 cut(s) 2003
Fsp4HI GCNGC 6 cut(s) 120, 492, 738, 1748, 1844, 2185
FspBI CTAG 5 cut(s) 167, 1211, 1340, 1776, 1952
GlaI GCGC 4 cut(s) 534, 595, 1317, 1736
GluI GCNGC 6 cut(s) 120, 492, 738, 1748, 1844, 2185
GsuI CTGGAG 2 cut(s) 1590, 1617
HaeII RGCGCY 1 cut(s) 1319
HaeIII GGCC 6 cut(s) 108, 507, 614, 1002, 1150, 1532
HapII CCGG 3 cut(s) 202, 578, 623
HhaI GCGC 4 cut(s) 535, 596, 1318, 1737
Hin6I GCGC 4 cut(s) 533, 594, 1316, 1735
HinP1I GCGC 4 cut(s) 533, 594, 1316, 1735
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HindIII AAGCTT 2 cut(s) 545, 1327
HinfI GANTC 7 cut(s) 257, 630, 863, 895, 2131, 2191, 2239
HpaII CCGG 3 cut(s) 202, 578, 623
HphI GGTGA 4 cut(s) 295, 2055, 2126, 2182
Hpy166II GTNNAC 9 cut(s) 42, 85, 952, 1043, 1057, 1069, 1469, 2173, 2273
Hpy188I TCNGA 8 cut(s) 396, 844, 900, 1113, 2128, 2238, 2281, 2326
Hpy8I GTNNAC 9 cut(s) 42, 85, 952, 1043, 1057, 1069, 1469, 2173, 2273
Hpy99I CGWCG 3 cut(s) 62, 321, 1563
HpyAV CCTTC 4 cut(s) 1151, 1348, 1640, 1892
HpyCH4III ACNGT 6 cut(s) 198, 1066, 1196, 1486, 1728, 2277
HpyCH4IV ACGT 9 cut(s) 60, 319, 439, 687, 798, 919, 1039, 1712, 1839
HpyF10VI GCNNNNNNNGC 4 cut(s) 539, 743, 1516, 2370
HpyF3I CTNAG 6 cut(s) 861, 867, 1319, 1817, 2036, 2325
HpySE526I ACGT 9 cut(s) 60, 319, 439, 687, 798, 919, 1039, 1712, 1839
HspAI GCGC 4 cut(s) 533, 594, 1316, 1735
Kpn2I TCCGGA 1 cut(s) 577
Ksp22I TGATCA 1 cut(s) 1936
LmnI GCTCC 3 cut(s) 1578, 1755, 2006
Lsp1109I GCAGC 5 cut(s) 503, 724, 1759, 1855, 2171
LweI GCATC 4 cut(s) 420, 1463, 1892, 2330
MaeI CTAG 5 cut(s) 167, 1211, 1340, 1776, 1952
MaeII ACGT 9 cut(s) 60, 319, 439, 687, 798, 919, 1039, 1712, 1839
MaeIII GTNAC 1 cut(s) 2392
MflI RGATCY 3 cut(s) 222, 1342, 1590
MhlI GDGCHC 2 cut(s) 1951, 2003
MlsI TGGCCA 3 cut(s) 507, 614, 1532
MluNI TGGCCA 3 cut(s) 507, 614, 1532
MlyI GAGTC 4 cut(s) 251, 872, 904, 2233
MmeI TCCRAC 4 cut(s) 607, 679, 940, 1254
Mox20I TGGCCA 3 cut(s) 507, 614, 1532
Mph1103I ATGCAT 1 cut(s) 1512
MroI TCCGGA 1 cut(s) 577
MroXI GAANNNNTTC 2 cut(s) 585, 634
MscI TGGCCA 3 cut(s) 507, 614, 1532
MslI CAYNNNNRTG 2 cut(s) 1064, 1742
Msp20I TGGCCA 3 cut(s) 507, 614, 1532
MspA1I CMGCKG 1 cut(s) 737
MspCI CTTAAG 1 cut(s) 1085
MspI CCGG 3 cut(s) 202, 578, 623
MspR9I CCNGG 7 cut(s) 143, 203, 623, 1005, 1569, 1596, 2208
Mva1269I GAATGC 1 cut(s) 642
MvaI CCWGG 5 cut(s) 143, 1005, 1569, 1596, 2208
MvnI CGCG 3 cut(s) 119, 2350, 2386
MwoI GCNNNNNNNGC 4 cut(s) 539, 743, 1516, 2370
NciI CCSGG 2 cut(s) 203, 623
NcoI CCATGG 1 cut(s) 1753
NlaIV GGNNCC 3 cut(s) 1592, 1633, 2002
NruI TCGCGA 1 cut(s) 2386
NsiI ATGCAT 1 cut(s) 1512
NspI RCATGY 2 cut(s) 359, 1133
PaeI GCATGC 1 cut(s) 1133
PciI ACATGT 1 cut(s) 355
PcsI WCGNNNNNNNCGW 1 cut(s) 1036
PctI GAATGC 1 cut(s) 642
PdmI GAANNNNTTC 2 cut(s) 585, 634
PfeI GAWTC 3 cut(s) 630, 2131, 2191
PflFI GACNNNGTC 3 cut(s) 689, 862, 1406
PkrI GCNGC 6 cut(s) 121, 493, 739, 1749, 1845, 2186
PleI GAGTC 4 cut(s) 251, 871, 903, 2233
PpsI GAGTC 4 cut(s) 251, 871, 903, 2233
Ppu21I YACGTR 1 cut(s) 1713
PscI ACATGT 1 cut(s) 355
PsiI TTATAA 2 cut(s) 753, 1481
Psp1406I AACGTT 2 cut(s) 798, 1039
Psp6I CCWGG 5 cut(s) 141, 1003, 1567, 1594, 2206
PspGI CCWGG 5 cut(s) 141, 1003, 1567, 1594, 2206
PspN4I GGNNCC 3 cut(s) 1592, 1633, 2002
PspPI GGNCC 4 cut(s) 106, 1001, 1402, 2223
PsuI RGATCY 3 cut(s) 222, 1342, 1590
PsyI GACNNNGTC 3 cut(s) 689, 862, 1406
PvuII CAGCTG 1 cut(s) 737
RruI TCGCGA 1 cut(s) 2386
RsaI GTAC 7 cut(s) 930, 1614, 1693, 1789, 1986, 2313, 2346
RsaNI GTAC 7 cut(s) 929, 1613, 1692, 1788, 1985, 2312, 2345
RseI CAYNNNNRTG 2 cut(s) 1064, 1742
SatI GCNGC 6 cut(s) 120, 492, 738, 1748, 1844, 2185
Sau96I GGNCC 4 cut(s) 106, 1001, 1402, 2223
ScaI AGTACT 1 cut(s) 2313
SchI GAGTC 4 cut(s) 251, 872, 904, 2233
ScrFI CCNGG 7 cut(s) 143, 203, 623, 1005, 1569, 1596, 2208
SduI GDGCHC 2 cut(s) 1951, 2003
SfaNI GCATC 4 cut(s) 420, 1463, 1892, 2330
SfcI CTRYAG 1 cut(s) 2218
SinI GGWCC 2 cut(s) 1402, 2223
SmiMI CAYNNNNRTG 2 cut(s) 1064, 1742
SmlI CTYRAG 4 cut(s) 67, 384, 1085, 1832
SmoI CTYRAG 4 cut(s) 67, 384, 1085, 1832
SpeI ACTAGT 1 cut(s) 1951
SphI GCATGC 1 cut(s) 1133
SsiI CCGC 4 cut(s) 119, 254, 1082, 2348
SspI AATATT 2 cut(s) 333, 1419
SspMI CTAG 5 cut(s) 167, 1211, 1340, 1776, 1952
StyD4I CCNGG 7 cut(s) 141, 201, 621, 1003, 1567, 1594, 2206
StyI CCWWGG 1 cut(s) 1753
TaaI ACNGT 6 cut(s) 198, 1066, 1196, 1486, 1728, 2277
TaiI ACGT 9 cut(s) 63, 322, 442, 690, 801, 922, 1042, 1715, 1842
TaqI TCGA 3 cut(s) 210, 886, 1522
TatI WGTACW 4 cut(s) 1612, 1691, 1787, 2311
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 3 cut(s) 630, 2131, 2191
TscAI CASTG 6 cut(s) 82, 529, 883, 1071, 2044, 2275
TseI GCWGC 5 cut(s) 491, 737, 1747, 1843, 2184
TspDTI ATGAA 6 cut(s) 15, 752, 1050, 1170, 1325, 1823
TspGWI ACGGA 4 cut(s) 387, 404, 1454, 2221
TspRI CASTG 6 cut(s) 82, 529, 883, 1071, 2044, 2275
Tth111I GACNNNGTC 3 cut(s) 689, 862, 1406
Vha464I CTTAAG 1 cut(s) 1085
VpaK11BI GGWCC 2 cut(s) 1402, 2223
XagI CCTNNNNNAGG 1 cut(s) 1155
XbaI TCTAGA 1 cut(s) 166
XceI RCATGY 2 cut(s) 359, 1133
XmiI GTMKAC 2 cut(s) 84, 951
XmnI GAANNNNTTC 2 cut(s) 585, 634
XspI CTAG 5 cut(s) 167, 1211, 1340, 1776, 1952
ZrmI AGTACT 1 cut(s) 2313
Zsp2I ATGCAT 1 cut(s) 1512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.