MD02G1307200.v1.1

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000055
Physical Location & Seq
Reverse (-)
36244617 .. 36250278
5662 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1307200.v1.1.491

Sequence Viewer

Length: 2925 bp
ATGGCCTCCTCCTCCTCAAAAAGTGGCAAGTACGACGTGTTCTTGAGCTTCCGAGGCGACACGCGCAGGAACTTGACGGACTACCTCGCCCTCACATTGGAAAAAGAGGGATTCCACGTCTTTCTCGACGAGAACACCTTGACCAGAGGCGACCCTATAACACCAGCACTGCAGCAAGCAATCAAAGACTCTAGGCTTGCTGCTATCATCTTCTCAAGGGGGTATGCTGAGTCGAGATGGTGTCTTGAGGAGCTGGTGGAGATCTTGGCCTGCAAAGAAACAATGGGGCTAATGGTTTTGCCAATTTTCTATGATATCGATCCTACCCATGTCAGGCATCAGACAAGTGATTTTGAGGAAGCATTTCTGAGACTTCAACAGCGCTTCCCTGACAAGGTGCAGATCTGGAAAGATGCTCTTAAAGCAGCTGCAGAGTTGGCCGGCGAGGGTTTTAGTGAAACTACTGGGTATGAAGGAAGGTTTATCCAGCAAATTGTTGACGAGATCGCTAGAAAACTGAAGAACACATGCTTGACCGTAGCCCCAAACCCAGTTGGAATAGATTCTCGGGTGCAAGAAATTGTTAAGTATTTGAATGATGGAGGATCAGATGATGTCCGCATAATTGGAATTTGGGGTATGGGCGGACTGGGTAAAACGACGGTTGCCAAAGACATTTTCAACAAATATCCGGCCATTTTCAACAAATATCCGGATAAGTTTGCAGGGAAAAGTTTTCTTGCTAATGTGAGAGAAGAGAAACTGGTTGATGTGCAAAACATACTTCTTTATGATGTGTTGAGATCGAGAAACATAAAGGTTAGTAGAGTTGATGAAGGTACCGAGGATATAAAAAGAAGACTTGGCAAACTGAGGGTACTTGTCATAGTTGATGGTGTAGACAGCGTGAAACAGTTAGAAGCATTAGCTATAAAACGCGACTCATTTGGCCCAGGTAGTAGAATTATTATAACCACAAGAGATAAACATTTGCTAGAGATACTAAAAGCGGATAGGATATGTCATCTACCAGCAATGAATGAAAAAGAAGCTCTTGAGCTCCTTAGTAGGCGTGCCTTTAATATGAATTATCCTATGGAAGGGTATTTTGAACTCGCAAGAGAAGTTGTTGATTACTGTGGAGGTTTGCCACTAGCACTTGAATATTTAGGTTCTTATCTATTGGGAAAAACCATAAGTCAATGGAATAGTGCATTGGGTAGATGGAAAAGATCACGACTTGATTCGGAAATTCATAAAAATTTGAAGATAAGCTATGATGGGCTAACTAATGACGATTTGAGGGCTATATTCCTTGATATATCGTGTTTTTTTACTGGAATGAACAAGGATTATGTCATGAAAATACTGCATCAATCCGATACAAAATTAGAAATTGAAGAACTCCATGATCAATGCCTTATAACTGTTGATAAAGAGGGCAATCTGATGATGCATGGCTTGATTCGAGACACTGGCAGAGAAATCGTACGTGCGAAATCCCCTAACAACCTTCAAAAACGTTGCAGATTGTGGGATCATGAAGATGTGAAATGCGTACTGAGGACCGAGAGGACCAAATCTGGAAGGGGAGAAATTGAGGGACTCGCTTTAGATTTGTCAGAACGTCAGAAGCCCAGCTTCAGTATAAAAGCATTTAGCGAGATGGACGGATTGAGATTACTCAAACTCAAAGGCGTACAGTTCCCTGGAGACTGCAAAGACCTTTCCATACACCTTTCCAAAGGGTTAAGATGGTTGTGTTGGCCTGAGTTTCCTATGACTGGCATACCCAGTGATTTTAATCAAACAAACCTAGTTGACATCGACCTGAGTCATAGCAACATAAAAGTTTGGGAGGACTCCGACGTGTCACTTGAGAAGTTGAAGTTTCTTAATCTCAGTTACTGCAATGACCTGACTAAATTACCCGACTTCTCGAATATCCCAAATCTTGAGAGATTGATACTCAAAGGTTGCAAAAAGCTTGAGGAAATTCCAGCTTTACCAACAAATTTGGAAATCCTGGAAGCGGATGAGTGCATTGCATTGGAGAAAATGCCCGACTTTTCAGAAATGTCAAGGATGAGAGAATTGCATCTGAATCACTCCCCCAAACTCTCTGAAATTCTAGGCTTGGATAAGGCATTAAACTCCATGACAAGTATTCATATGGAAGGTTGCACCAATCTCACTGCTTCTTTTAAAGAAGCAATCCTAAAGGGATGGACTTCTTGCGGATATGGTGGCATTTTCCTCAATGGAAGTTGTATTCCTGAGTGGTTCAAGTATGTCGGGGATGACAGGGATGATGAAGTCTGTTTTGAAGTGCCTCAAAGGGTTGGTAGTAATTTTAAATGGTTGACTCTGTGCTGTGTATACTCTGCAAACAAACAACCTGAGGATTGGCCGCTTGTCATTTCCGTTCAAAATAAAACCAAGTGTACTGCTTTGCTCGCCCGGATAACATATGCCTCAGTACCAACTTCCTGTGATTCTGAAGACCATTATCTTTGGCAGGGGCAATTATCCAACGATGTGCTCAGTTGGCAAGACGGGGATGAAGTCAAGATTTTTGTAGGGCCAGTTGGATCAGGAGATAATTCTGCAAGAGTGAAGAAAATAGCGGTTGATCTTGTCTGGGACAAATTTATGAAGGAAAATACGGATGATTCGCATCCCGGTTTATATGATTTAAGCCCGCATCAGGATTGGTTGTCGGGAGACAAGGATGAGGCACGAACAAGCCATGACGCATCTGATGAGAACCCACCTTCGAAACTATTGAGGTCTGATAGTGTTGGTGGTGGTGATGATGCGGCACGAACAAGCCATGACGCATCTGATGAGAACCGAACTCCCAAAAGAGGATTGTTTTCTATTTTTTCGAAACTGCTTCCTTCGTGCGGTAAAAAAACCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

975

Amino Acids

110.07

Weight (kDa)

5.71

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 10 - 176 1.3e-43 TIR domain
TIR_2 PF13676 13 - 115 1.5e-14 TIR domain
NB-ARC PF00931 189 - 363 4.1e-20 NB-ARC domain
WHD_ROQ1 PF23282 435 - 501 5.1e-16 Disease resistance protein Roq1-like, winged-helix domain
LRR_RPS2 PF23247 617 - 741 1e-05 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36930 AT5G36930 AT5G36930 AT5G36930
fragaria_vesca FvH4_3g45361 FvH4_3g45380 FvH4_5g21061 FvH4_5g21062 FvH4_5g21063 FvH4_5g32050 FvH4_5g32970 FvH4_5g32990 FvH4_5g34190 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34211 FvH4_5g34240 FvH4_5g34250
malus_domestica MD00G1011700.v1.1 MD00G1026100.v1.1 MD00G1026500.v1.1 MD00G1027000.v1.1 MD00G1027100.v1.1 MD00G1027700.v1.1 MD00G1027800.v1.1 MD00G1028000.v1.1 MD00G1220000.v1.1 MD02G1024400.v1.1 MD02G1024800.v1.1 MD02G1026000.v1.1 MD02G1026100.v1.1 MD02G1031800.v1.1 MD02G1038500.v1.1 MD02G1038700.v1.1 MD02G1039200.v1.1 MD02G1040600.v1.1 MD02G1040900.v1.1 MD02G1041200.v1.1 MD02G1041300.v1.1 MD02G1041700.v1.1 MD02G1042000.v1.1 MD02G1043800.v1.1 MD02G1043900.v1.1 MD02G1044300.v1.1 MD02G1045200.v1.1 MD02G1045300.v1.1 MD02G1051200.v1.1 MD02G1052200.v1.1 MD02G1052800.v1.1 MD02G1053100.v1.1 MD02G1053600.v1.1 MD02G1055500.v1.1 MD02G1063300.v1.1 MD02G1063400.v1.1 MD02G1063800.v1.1 MD02G1306500.v1.1 MD02G1306600.v1.1 MD02G1306700.v1.1 MD02G1306900.v1.1 MD02G1307200.v1.1 MD04G1011700.v1.1 MD05G1315400.v1.1 MD05G1316000.v1.1 MD05G1316700.v1.1 MD05G1317000.v1.1 MD05G1317300.v1.1 MD05G1317600.v1.1 MD05G1317700.v1.1 MD07G1102800.v1.1 MD07G1238200.v1.1 MD08G1175900.v1.1 MD08G1203600.v1.1 MD09G1024200.v1.1 MD09G1039600.v1.1 MD09G1044800.v1.1 MD09G1045100.v1.1 MD10G1038700.v1.1 MD10G1039000.v1.1 MD10G1039200.v1.1 MD10G1040000.v1.1 MD10G1040200.v1.1 MD10G1040600.v1.1 MD10G1040800.v1.1 MD10G1297300.v1.1 MD12G1247500.v1.1 MD12G1247900.v1.1 MD12G1248300.v1.1 MD12G1248800.v1.1 MD15G1103700.v1.1 MD15G1103800.v1.1 MD15G1104000.v1.1 MD15G1179600.v1.1 MD15G1182500.v1.1 MD16G1068200.v1.1 MD16G1068300.v1.1 MD17G1024600.v1.1 MD17G1024700.v1.1 MD17G1025000.v1.1 MD17G1025900.v1.1
prunus_persica Prupe.1G539800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G557100_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557300_v2.0.a1
pyrus_communis pycom02g02080 pycom02g02090 pycom02g02110 pycom02g03220 pycom02g03260 pycom02g03370 pycom02g03390 pycom02g03410 pycom02g03420 pycom02g03450 pycom02g03500 pycom02g03730 pycom02g03770 pycom02g04400 pycom02g04410 pycom02g04430 pycom02g04450 pycom02g04460 pycom02g04490 pycom02g05200 pycom02g25710 pycom02g25750 pycom02g25790 pycom02g25810 pycom02g25830 pycom04g00920 pycom04g00930 pycom04g00940 pycom05g29300 pycom05g29310 pycom05g29380 pycom05g29410 pycom07g06310 pycom07g21420 pycom08g15070 pycom08g17540 pycom08g17560 pycom08g17570 pycom10g02670 pycom10g02680 pycom10g02700 pycom10g02770 pycom10g02790 pycom10g02800 pycom10g02810 pycom10g25020 pycom10g25030 pycom10g25050 pycom10g25080 pycom111g01990 pycom111g02000 pycom111g02030 pycom111g02040 pycom111g02050 pycom111g02060 pycom12g22710 pycom12g22720 pycom12g22730 pycom12g22740 pycom12g22750 pycom12g22770 pycom12g22780 pycom12g22790 pycom12g22800 pycom12g22810 pycom12g22830 pycom12g22840 pycom12g22860 pycom15g09440 pycom15g09480 pycom15g16120 pycom15g32380 pycom16g05970 pycom17g02100
rosa_chinensis RchiOBHm_Chr2g0144661 RchiOBHm_Chr4g0407491 RchiOBHm_Chr4g0407501 RchiOBHm_Chr4g0412381 RchiOBHm_Chr7g0208191 RchiOBHm_Chr7g0208201 RchiOBHm_Chr7g0208211 RchiOBHm_Chr7g0208221 RchiOBHm_Chr7g0228071 RchiOBHm_Chr7g0228121 RchiOBHm_Chr7g0230971 RchiOBHm_Chr7g0230981 RchiOBHm_Chr7g0233901 RchiOBHm_Chr7g0233951 RchiOBHm_Chr7g0233961 RchiOBHm_Chr7g0233991 RchiOBHm_Chr7g0234021 RchiOBHm_Chr7g0234151 RchiOBHm_Chr7g0234161 RchiOBHm_Chr7g0234241 RchiOBHm_Chr7g0234501 RchiOBHm_Chr7g0234641 RchiOBHm_Chr7g0234771 RchiOBHm_Chr7g0234781 RchiOBHm_Chr7g0234991 RchiOBHm_Chr7g0241291 RchiOBHm_Chr7g0241301
rosa_laevigata RLG00000001186 RLG00000001187 RLG00000001212 RLG00000001226 RLG00000001233 RLG00000001590 RLG00000003242 RLG00000003243 RLG00000003249 RLG00000008688 RLG00000008690
rosa_multiflora Rmu_co7966574.1_g000001 Rmu_co8120830.1_g000001 Rmu_co8142226.1_g000001 Rmu_co8293083.1_g000001 Rmu_co8351227.1_g000001 Rmu_co8380159.1_g000001 Rmu_co8456505.1_g000001 Rmu_sc0000676.1_g000025 Rmu_sc0000706.1_g000018 Rmu_sc0000706.1_g000040 Rmu_sc0000740.1_g000029 Rmu_sc0000740.1_g000032 Rmu_sc0000740.1_g000037 Rmu_sc0000740.1_g000040 Rmu_sc0000762.1_g000003 Rmu_sc0000762.1_g000019 Rmu_sc0000762.1_g000034 Rmu_sc0000762.1_g000069 Rmu_sc0000892.1_g000001 Rmu_sc0000945.1_g000040 Rmu_sc0001913.1_g000037 Rmu_sc0001913.1_g000041 Rmu_sc0001913.1_g000049 Rmu_sc0002775.1_g000017 Rmu_sc0002775.1_g000018 Rmu_sc0002775.1_g000020 Rmu_sc0002775.1_g000021 Rmu_sc0002775.1_g000022 Rmu_sc0002775.1_g000025 Rmu_sc0002775.1_g000026 Rmu_sc0002775.1_g000028 Rmu_sc0002775.1_g000030 Rmu_sc0004858.1_g000002 Rmu_sc0004864.1_g000022 Rmu_sc0005038.1_g000023 Rmu_sc0005840.1_g000014 Rmu_sc0006724.1_g000003 Rmu_sc0006824.1_g000005 Rmu_sc0007869.1_g000003 Rmu_sc0007869.1_g000005 Rmu_sc0007869.1_g000008 Rmu_sc0008646.1_g000007 Rmu_sc0009637.1_g000009 Rmu_sc0010500.1_g000002 Rmu_sc0010500.1_g000012 Rmu_sc0012403.1_g000025 Rmu_sc0013768.1_g000025 Rmu_sc0015625.1_g000001 Rmu_sc0019715.1_g000001 Rmu_sc0021133.1_g000002 Rmu_sc0021904.1_g000001 Rmu_sc0021904.1_g000003 Rmu_sc0021904.1_g000004 Rmu_sc0022054.1_g000001 Rmu_sc0026025.1_g000001 Rmu_sc0036828.1_g000002 Rmu_sc0041808.1_g000001 Rmu_ssc0000012.1_g000001
rosa_roxburghii Rroxscaffold_3G00226370 Rroxscaffold_3G00226860 Rroxscaffold_3G00226900 Rroxscaffold_3G00226930 Rroxscaffold_3G00226940 Rroxscaffold_3G00226970 Rroxscaffold_3G00226980 Rroxscaffold_3G00231530 Rroxscaffold_3G00237090 Rroxscaffold_3G00250760 Rroxscaffold_3G00250800
rosa_rugosa Rorug04G0082300 Rorug07G0101800 Rorug07G0102000 Rorug07G0102100 Rorug07G0221200 Rorug07G0245700 Rorug07G0245700 Rorug07G0245700 Rorug07G0263900 Rorug07G0264000 Rorug07G0264000 Rorug07G0264500 Rorug07G0282900 Rorug07G0282900 Rorug07G0283100 Rorug07G0283200.1 Rorug07G0283300 Rorug07G0283900 Rorug07G0284000 Rorug07G0284100 Rorug07G0284300 Rorug07G0284400 Rorug07G0284500 Rorug07G0285000 Rorug07G0285200 Rorug07G0285300 Rorug07G0285500 Rorug07G0286800 Rorug07G0286900 Rorug07G0287100 Rorug07G0287200
rosa_samantha Rh7AG236100 Rh7AG236200 Rh7AG236300 Rh7AG440000 Rh7AG440100 Rh7BG411900 Rh7BG412000 Rh7BG412600 Rh7CG251300 Rh7CG417700 Rh7CG460100 Rh7DG242100 Rh7DG242200 Rh7DG242300 Rh7DG429300
rosa_wichuraiana Rw0G005070 Rw0G010780 Rw0G012530 Rw7G020110 Rw7G020160 Rw7G020170 Rw7G033210 Rw7G033230 Rw7G033250 Rw7G034540 Rw7G035150 Rw7G036190 Rw7G036210 Rw7G036260 Rw7G036270 Rw7G036290 Rw7G036300 Rw7G036310 Rw7G036350 Rw7G036360 Rw7G036440 Rw7G036510 Rw7G036530 Rw7G036570 Rw7G036590 Rw7G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 971, 1424
Acc65I GGTACC 1 cut(s) 839
AccB1I GGYRCC 1 cut(s) 839
AccI GTMKAC 2 cut(s) 900, 2379
AccII CGCG 2 cut(s) 64, 939
AccIII TCCGGA 1 cut(s) 712
AclI AACGTT 1 cut(s) 1522
AclWI GGATC 4 cut(s) 314, 613, 1545, 2599
AcoI YGGCCR 3 cut(s) 438, 693, 2408
AcsI RAATTY 7 cut(s) 630, 1251, 1261, 1995, 2014, 2127, 2648
AcuI CTGAAG 3 cut(s) 539, 1627, 2520
AfaI GTAC 8 cut(s) 32, 841, 879, 1491, 1560, 1701, 2446, 2481
AfeI AGCGCT 1 cut(s) 383
AfiI CCNNNNNNNGG 9 cut(s) 97, 333, 394, 1100, 1784, 2032, 2707, 2867, 2906
AflIII ACRYGT 2 cut(s) 36, 1869
AjiI CACGTC 3 cut(s) 37, 118, 1870
AjnI CCWGG 3 cut(s) 952, 1708, 2025
AjuI GAANNNNNNNTTGG 4 cut(s) 662, 694, 1199, 1231
Alw21I GWGCWC 2 cut(s) 1062, 2544
Alw26I GTCTC 4 cut(s) 364, 1464, 1707, 2718
AlwI GGATC 4 cut(s) 314, 613, 1545, 2599
AlwNI CAGNNNCTG 1 cut(s) 1908
Ama87I CYCGRG 1 cut(s) 567
Aor13HI TCCGGA 1 cut(s) 712
Aor51HI AGCGCT 1 cut(s) 383
AoxI GGCC 8 cut(s) 3, 267, 438, 693, 949, 1766, 2408, 2582
ApeKI GCWGC 4 cut(s) 172, 200, 425, 428
ApoI RAATTY 7 cut(s) 630, 1251, 1261, 1995, 2014, 2127, 2648
Asp700I GAANNNNTTC 2 cut(s) 363, 562
Asp718I GGTACC 1 cut(s) 839
AspLEI GCGC 2 cut(s) 66, 384
AspS9I GGNCC 4 cut(s) 950, 1566, 1575, 2582
AsuC2I CCSGG 2 cut(s) 2461, 2682
AsuHPI GGTGA 1 cut(s) 2822
AsuII TTCGAA 2 cut(s) 2777, 2888
AvaI CYCGRG 1 cut(s) 567
AvaII GGWCC 2 cut(s) 1566, 1575
AxyI CCTNAGG 1 cut(s) 2400
BanI GGYRCC 1 cut(s) 839
BanII GRGCYC 1 cut(s) 1062
BbsI GAAGAC 2 cut(s) 865, 2508
Bbv12I GWGCWC 2 cut(s) 1062, 2544
BbvI GCAGC 4 cut(s) 184, 187, 415, 437
BccI CCATC 8 cut(s) 231, 593, 887, 1218, 1274, 1660, 1749, 2220
BcgI CGANNNNNNTGC 2 cut(s) 1468, 1502
BciT130I CCWGG 3 cut(s) 954, 1710, 2027
BclI TGATCA 1 cut(s) 1411
BcnI CCSGG 2 cut(s) 2461, 2682
BcoDI GTCTC 4 cut(s) 364, 1464, 1707, 2718
BfaI CTAG 6 cut(s) 192, 510, 995, 1154, 1817, 2132
BfmI CTRYAG 2 cut(s) 170, 429
BfoI RGCGCY 1 cut(s) 385
BglII AGATCT 2 cut(s) 261, 402
BisI GCNGC 6 cut(s) 173, 201, 426, 429, 2411, 2820
BlsI GCNGC 6 cut(s) 174, 202, 427, 430, 2412, 2821
Bme1390I CCNGG 5 cut(s) 954, 1710, 2027, 2461, 2682
Bme18I GGWCC 2 cut(s) 1566, 1575
BmeT110I CYCGRG 1 cut(s) 567
BmgBI CACGTC 3 cut(s) 37, 118, 1870
BmgT120I GGNCC 4 cut(s) 950, 1566, 1575, 2582
BmiI GGNNCC 1 cut(s) 841
BmrFI CCNGG 5 cut(s) 954, 1710, 2027, 2461, 2682
BmrI ACTGGG 4 cut(s) 474, 545, 659, 1788
BmuI ACTGGG 4 cut(s) 474, 545, 659, 1788
BoxI GACNNNNGTC 1 cut(s) 1833
BpiI GAAGAC 2 cut(s) 865, 2508
BpmI CTGGAG 1 cut(s) 1731
Bpu14I TTCGAA 2 cut(s) 2777, 2888
BpuEI CTTGAG 7 cut(s) 64, 199, 266, 1076, 1898, 1976, 2009
BpuMI CCSGG 2 cut(s) 2461, 2682
Bsa29I ATCGAT 1 cut(s) 318
BsaAI YACGTR 1 cut(s) 1493
BsaBI GATNNNNATC 3 cut(s) 318, 1803, 2676
BsaJI CCNNGG 4 cut(s) 52, 843, 952, 1708
BsaWI WCCGGW 1 cut(s) 712
Bsc4I CCNNNNNNNGG 9 cut(s) 97, 333, 394, 1100, 1784, 2032, 2707, 2867, 2906
Bse118I RCCGGY 1 cut(s) 440
Bse1I ACTGG 9 cut(s) 469, 551, 654, 768, 1342, 1480, 1789, 1794, 2585
Bse21I CCTNAGG 1 cut(s) 2400
Bse3DI GCAATG 3 cut(s) 1041, 1918, 2043
Bse8I GATNNNNATC 3 cut(s) 318, 1803, 2676
BseAI TCCGGA 1 cut(s) 712
BseBI CCWGG 3 cut(s) 954, 1710, 2027
BseCI ATCGAT 1 cut(s) 318
BseDI CCNNGG 4 cut(s) 52, 843, 952, 1708
BseGI GGATG 9 cut(s) 2041, 2091, 2231, 2305, 2314, 2566, 2674, 2677, 2737
BseJI GATNNNNATC 3 cut(s) 318, 1803, 2676
BseLI CCNNNNNNNGG 9 cut(s) 97, 333, 394, 1100, 1784, 2032, 2707, 2867, 2906
BseMI GCAATG 3 cut(s) 1041, 1918, 2043
BseNI ACTGG 9 cut(s) 469, 551, 654, 768, 1342, 1480, 1789, 1794, 2585
BseRI GAGGAG 2 cut(s) 4, 263
BseXI GCAGC 4 cut(s) 184, 187, 415, 437
BseYI CCCAGC 1 cut(s) 1637
BsgI GTGCAG 1 cut(s) 419
Bsh1236I CGCG 2 cut(s) 64, 939
BshFI GGCC 8 cut(s) 5, 269, 440, 695, 951, 1768, 2410, 2584
BshNI GGYRCC 1 cut(s) 839
BshVI ATCGAT 1 cut(s) 318
BsiHKAI GWGCWC 2 cut(s) 1062, 2544
BsiHKCI CYCGRG 1 cut(s) 567
BsiSI CCGG 5 cut(s) 441, 692, 713, 2461, 2682
BsiWI CGTACG 1 cut(s) 1489
BslFI GGGAC 2 cut(s) 1617, 2657
BslI CCNNNNNNNGG 9 cut(s) 97, 333, 394, 1100, 1784, 2032, 2707, 2867, 2906
BsmAI GTCTC 4 cut(s) 364, 1464, 1707, 2718
BsmFI GGGAC 2 cut(s) 1617, 2657
BsnI GGCC 8 cut(s) 5, 269, 440, 695, 951, 1768, 2410, 2584
BsoBI CYCGRG 1 cut(s) 567
Bsp119I TTCGAA 2 cut(s) 2777, 2888
Bsp1286I GDGCHC 2 cut(s) 1062, 2544
Bsp13I TCCGGA 1 cut(s) 712
BspANI GGCC 8 cut(s) 5, 269, 440, 695, 951, 1768, 2410, 2584
BspDI ATCGAT 1 cut(s) 318
BspEI TCCGGA 1 cut(s) 712
BspFNI CGCG 2 cut(s) 64, 939
BspHI TCATGA 2 cut(s) 1359, 1540
BspLI GGNNCC 1 cut(s) 841
BspMAI CTGCAG 2 cut(s) 174, 433
BspPI GGATC 4 cut(s) 314, 613, 1545, 2599
BspT104I TTCGAA 2 cut(s) 2777, 2888
BspT107I GGYRCC 1 cut(s) 839
BsrDI GCAATG 3 cut(s) 1041, 1918, 2043
BsrFI RCCGGY 1 cut(s) 440
BsrI ACTGG 9 cut(s) 469, 551, 654, 768, 1342, 1480, 1789, 1794, 2585
BssAI RCCGGY 1 cut(s) 440
BssECI CCNNGG 4 cut(s) 52, 843, 952, 1708
BssNAI GTATAC 1 cut(s) 2380
Bst1107I GTATAC 1 cut(s) 2380
Bst2UI CCWGG 3 cut(s) 954, 1710, 2027
Bst4CI ACNGT 6 cut(s) 538, 664, 915, 1139, 1429, 1704
Bst6I CTCTTC 1 cut(s) 750
BstBAI YACGTR 1 cut(s) 1493
BstBI TTCGAA 2 cut(s) 2777, 2888
BstC8I GCNNGC 7 cut(s) 177, 198, 271, 442, 1074, 2457, 2702
BstENI CCTNNNNNAGG 1 cut(s) 1098
BstF5I GGATG 9 cut(s) 2041, 2091, 2231, 2305, 2314, 2566, 2674, 2677, 2737
BstFNI CGCG 2 cut(s) 64, 939
BstH2I RGCGCY 1 cut(s) 385
BstHHI GCGC 2 cut(s) 66, 384
BstMAI GTCTC 4 cut(s) 364, 1464, 1707, 2718
BstMWI GCNNNNNNNGC 6 cut(s) 54, 63, 422, 437, 2456, 2548
BstNI CCWGG 3 cut(s) 954, 1710, 2027
BstNSI RCATGY 1 cut(s) 531
BstPAI GACNNNNGTC 1 cut(s) 1833
BstSCI CCNGG 5 cut(s) 952, 1708, 2025, 2459, 2680
BstSFI CTRYAG 2 cut(s) 170, 429
BstUI CGCG 2 cut(s) 64, 939
BstV1I GCAGC 4 cut(s) 184, 187, 415, 437
BstV2I GAAGAC 2 cut(s) 865, 2508
BstX2I RGATCY 2 cut(s) 261, 402
BstYI RGATCY 2 cut(s) 261, 402
BstZ17I GTATAC 1 cut(s) 2380
Bsu15I ATCGAT 1 cut(s) 318
Bsu36I CCTNAGG 1 cut(s) 2400
BsuRI GGCC 8 cut(s) 5, 269, 440, 695, 951, 1768, 2410, 2584
BsuTUI ATCGAT 1 cut(s) 318
BtrI CACGTC 3 cut(s) 37, 118, 1870
BtsCI GGATG 9 cut(s) 2041, 2091, 2231, 2305, 2314, 2566, 2674, 2677, 2737
BtsI GCAGTG 2 cut(s) 167, 2193
BtsIMutI CAGTG 4 cut(s) 167, 1473, 1801, 2193
Cac8I GCNNGC 7 cut(s) 177, 198, 271, 442, 1074, 2457, 2702
CaiI CAGNNNCTG 1 cut(s) 1908
CciI TCATGA 2 cut(s) 1359, 1540
CfoI GCGC 2 cut(s) 66, 384
Cfr10I RCCGGY 1 cut(s) 440
Cfr13I GGNCC 4 cut(s) 950, 1566, 1575, 2582
ClaI ATCGAT 1 cut(s) 318
CseI GACGC 2 cut(s) 2762, 2846
Csp6I GTAC 8 cut(s) 31, 840, 878, 1490, 1559, 1700, 2445, 2480
CviAII CATG 9 cut(s) 329, 528, 1360, 1409, 1457, 1541, 2158, 2750, 2834
CviQI GTAC 8 cut(s) 31, 840, 878, 1490, 1559, 1700, 2445, 2480
DraI TTTAAA 2 cut(s) 2206, 2356
EaeI YGGCCR 3 cut(s) 438, 693, 2408
Eam1104I CTCTTC 1 cut(s) 750
EarI CTCTTC 1 cut(s) 750
EciI GGCGGA 1 cut(s) 660
Ecl136II GAGCTC 1 cut(s) 1060
Eco24I GRGCYC 1 cut(s) 1062
Eco32I GATATC 1 cut(s) 316
Eco47I GGWCC 2 cut(s) 1566, 1575
Eco47III AGCGCT 1 cut(s) 383
Eco53kI GAGCTC 1 cut(s) 1060
Eco57I CTGAAG 3 cut(s) 539, 1627, 2520
Eco81I CCTNAGG 1 cut(s) 2400
Eco88I CYCGRG 1 cut(s) 567
EcoICRI GAGCTC 1 cut(s) 1060
EcoNI CCTNNNNNAGG 1 cut(s) 1098
EcoRII CCWGG 3 cut(s) 952, 1708, 2025
EcoRV GATATC 1 cut(s) 316
EcoT22I ATGCAT 1 cut(s) 1458
EcoT38I GRGCYC 1 cut(s) 1062
FaeI CATG 9 cut(s) 332, 531, 1363, 1412, 1460, 1544, 2161, 2753, 2837
FalI AAGNNNNNCTT 6 cut(s) 402, 434, 1038, 1070, 1625, 1657
FaqI GGGAC 2 cut(s) 1617, 2657
FatI CATG 9 cut(s) 328, 527, 1359, 1408, 1456, 1540, 2157, 2749, 2833
FauI CCCGC 1 cut(s) 2709
FauNDI CATATG 2 cut(s) 2172, 2470
FbaI TGATCA 1 cut(s) 1411
FblI GTMKAC 2 cut(s) 900, 2379
Fnu4HI GCNGC 6 cut(s) 173, 201, 426, 429, 2411, 2820
FokI GGATG 9 cut(s) 2048, 2098, 2238, 2312, 2321, 2573, 2664, 2681, 2744
FriOI GRGCYC 1 cut(s) 1062
Fsp4HI GCNGC 6 cut(s) 173, 201, 426, 429, 2411, 2820
FspBI CTAG 6 cut(s) 192, 510, 995, 1154, 1817, 2132
GlaI GCGC 2 cut(s) 65, 383
GluI GCNGC 6 cut(s) 173, 201, 426, 429, 2411, 2820
GsaI CCCAGC 1 cut(s) 1641
GsuI CTGGAG 1 cut(s) 1731
HaeII RGCGCY 1 cut(s) 385
HaeIII GGCC 8 cut(s) 5, 269, 440, 695, 951, 1768, 2410, 2584
HapII CCGG 5 cut(s) 441, 692, 713, 2461, 2682
HgaI GACGC 2 cut(s) 2762, 2846
HhaI GCGC 2 cut(s) 66, 384
Hin1II CATG 9 cut(s) 332, 531, 1363, 1412, 1460, 1544, 2161, 2753, 2837
Hin6I GCGC 2 cut(s) 64, 382
HinP1I GCGC 2 cut(s) 64, 382
HincII GTYRAC 3 cut(s) 499, 1822, 2364
HindII GTYRAC 3 cut(s) 499, 1822, 2364
HindIII AAGCTT 1 cut(s) 1985
HpaII CCGG 5 cut(s) 441, 692, 713, 2461, 2682
HphI GGTGA 1 cut(s) 2822
Hpy166II GTNNAC 6 cut(s) 499, 901, 1822, 2364, 2380, 2445
Hpy8I GTNNAC 6 cut(s) 499, 901, 1822, 2364, 2380, 2445
Hpy99I CGWCG 4 cut(s) 38, 131, 664, 1871
HpyCH4III ACNGT 6 cut(s) 538, 664, 915, 1139, 1429, 1704
HpyCH4IV ACGT 6 cut(s) 36, 117, 1492, 1522, 1627, 1869
HpyF10VI GCNNNNNNNGC 6 cut(s) 54, 63, 422, 437, 2456, 2548
HpySE526I ACGT 6 cut(s) 36, 117, 1492, 1522, 1627, 1869
Hsp92II CATG 9 cut(s) 332, 531, 1363, 1412, 1460, 1544, 2161, 2753, 2837
HspAI GCGC 2 cut(s) 64, 382
Kpn2I TCCGGA 1 cut(s) 712
KpnI GGTACC 1 cut(s) 843
KroI GCCGGC 1 cut(s) 440
KroNI GCCGGC 1 cut(s) 442
Ksp22I TGATCA 1 cut(s) 1411
LmnI GCTCC 2 cut(s) 250, 1065
Lsp1109I GCAGC 4 cut(s) 184, 187, 415, 437
MaeI CTAG 6 cut(s) 192, 510, 995, 1154, 1817, 2132
MaeII ACGT 6 cut(s) 36, 117, 1492, 1522, 1627, 1869
MaeIII GTNAC 2 cut(s) 1872, 1904
MboII GAAGA 9 cut(s) 202, 532, 767, 870, 1279, 1412, 1556, 2513, 2629
MflI RGATCY 2 cut(s) 261, 402
MhlI GDGCHC 2 cut(s) 1062, 2544
MlyI GAGTC 7 cut(s) 182, 239, 935, 1599, 1843, 1856, 2359
MmeI TCCRAC 4 cut(s) 535, 1890, 2556, 2569
Mph1103I ATGCAT 1 cut(s) 1458
MroI TCCGGA 1 cut(s) 712
MroNI GCCGGC 1 cut(s) 440
MroXI GAANNNNTTC 2 cut(s) 363, 562
MslI CAYNNNNRTG 1 cut(s) 1545
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 5 cut(s) 441, 692, 713, 2461, 2682
MspR9I CCNGG 5 cut(s) 954, 1710, 2027, 2461, 2682
MvaI CCWGG 3 cut(s) 954, 1710, 2027
MvnI CGCG 2 cut(s) 64, 939
MwoI GCNNNNNNNGC 6 cut(s) 54, 63, 422, 437, 2456, 2548
NaeI GCCGGC 1 cut(s) 442
NciI CCSGG 2 cut(s) 2461, 2682
NdeI CATATG 2 cut(s) 2172, 2470
NgoMIV GCCGGC 1 cut(s) 440
NlaIII CATG 9 cut(s) 332, 531, 1363, 1412, 1460, 1544, 2161, 2753, 2837
NlaIV GGNNCC 1 cut(s) 841
NmuCI GTSAC 1 cut(s) 1872
NsiI ATGCAT 1 cut(s) 1458
NspI RCATGY 1 cut(s) 531
NspV TTCGAA 2 cut(s) 2777, 2888
PagI TCATGA 2 cut(s) 1359, 1540
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PdiI GCCGGC 1 cut(s) 442
PdmI GAANNNNTTC 2 cut(s) 363, 562
PfeI GAWTC 7 cut(s) 111, 563, 1244, 1465, 2104, 2495, 2672
Pfl23II CGTACG 1 cut(s) 1489
PfoI TCCNGGA 1 cut(s) 2025
PkrI GCNGC 6 cut(s) 174, 202, 427, 430, 2412, 2821
PleI GAGTC 7 cut(s) 182, 238, 935, 1599, 1842, 1856, 2359
PpsI GAGTC 7 cut(s) 182, 238, 935, 1599, 1842, 1856, 2359
Ppu21I YACGTR 1 cut(s) 1493
PshAI GACNNNNGTC 1 cut(s) 1833
PsiI TTATAA 2 cut(s) 971, 1424
Psp124BI GAGCTC 1 cut(s) 1062
Psp1406I AACGTT 1 cut(s) 1522
Psp6I CCWGG 3 cut(s) 952, 1708, 2025
PspFI CCCAGC 1 cut(s) 1637
PspGI CCWGG 3 cut(s) 952, 1708, 2025
PspLI CGTACG 1 cut(s) 1489
PspN4I GGNNCC 1 cut(s) 841
PspPI GGNCC 4 cut(s) 950, 1566, 1575, 2582
PsrI GAACNNNNNNTAC 2 cut(s) 23, 55
PstI CTGCAG 2 cut(s) 174, 433
PstNI CAGNNNCTG 1 cut(s) 1908
PsuI RGATCY 2 cut(s) 261, 402
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 8 cut(s) 32, 841, 879, 1491, 1560, 1701, 2446, 2481
RsaNI GTAC 8 cut(s) 31, 840, 878, 1490, 1559, 1700, 2445, 2480
RseI CAYNNNNRTG 1 cut(s) 1545
SacI GAGCTC 1 cut(s) 1062
SatI GCNGC 6 cut(s) 173, 201, 426, 429, 2411, 2820
Sau96I GGNCC 4 cut(s) 950, 1566, 1575, 2582
SchI GAGTC 7 cut(s) 182, 239, 935, 1599, 1843, 1856, 2359
ScrFI CCNGG 5 cut(s) 954, 1710, 2027, 2461, 2682
SduI GDGCHC 2 cut(s) 1062, 2544
SfcI CTRYAG 2 cut(s) 170, 429
SfuI TTCGAA 2 cut(s) 2777, 2888
SinI GGWCC 2 cut(s) 1566, 1575
SmiMI CAYNNNNRTG 1 cut(s) 1545
SmlI CTYRAG 7 cut(s) 43, 214, 245, 1055, 1877, 1955, 1988
SmoI CTYRAG 7 cut(s) 43, 214, 245, 1055, 1877, 1955, 1988
SspI AATATT 1 cut(s) 1166
SspMI CTAG 6 cut(s) 192, 510, 995, 1154, 1817, 2132
SstI GAGCTC 1 cut(s) 1062
StyD4I CCNGG 5 cut(s) 952, 1708, 2025, 2459, 2680
TaaI ACNGT 6 cut(s) 538, 664, 915, 1139, 1429, 1704
TaiI ACGT 6 cut(s) 39, 120, 1495, 1525, 1630, 1872
TaqI TCGA 9 cut(s) 126, 233, 318, 806, 1468, 1827, 1940, 2777, 2888
TaqII GACCGA 1 cut(s) 1583
TatI WGTACW 1 cut(s) 2444
TauI GCSGC 2 cut(s) 2413, 2822
TfiI GAWTC 7 cut(s) 111, 563, 1244, 1465, 2104, 2495, 2672
TscAI CASTG 4 cut(s) 174, 1480, 1801, 2200
TseFI GTSAC 1 cut(s) 1872
TseI GCWGC 4 cut(s) 172, 200, 425, 428
Tsp45I GTSAC 1 cut(s) 1872
TspGWI ACGGA 4 cut(s) 92, 1686, 2413, 2681
TspRI CASTG 4 cut(s) 174, 1480, 1801, 2200
VpaK11BI GGWCC 2 cut(s) 1566, 1575
XagI CCTNNNNNAGG 1 cut(s) 1098
XapI RAATTY 7 cut(s) 630, 1251, 1261, 1995, 2014, 2127, 2648
XceI RCATGY 1 cut(s) 531
XmiI GTMKAC 2 cut(s) 900, 2379
XmnI GAANNNNTTC 2 cut(s) 363, 562
XspI CTAG 6 cut(s) 192, 510, 995, 1154, 1817, 2132
Zsp2I ATGCAT 1 cut(s) 1458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.