TMV resistance protein N-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 968, 2067 |
| Acc36I | ACCTGC | 2 cut(s) | 1821, 3081 |
| AccB1I | GGYRCC | 1 cut(s) | 1536 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1391 |
| AccI | GTMKAC | 1 cut(s) | 2909 |
| AccII | CGCG | 1 cut(s) | 2253 |
| AciI | CCGC | 6 cut(s) | 176, 187, 478, 1816, 2339, 2481 |
| AclI | AACGTT | 2 cut(s) | 31, 1414 |
| AclWI | GGATC | 6 cut(s) | 215, 306, 326, 909, 2927, 2940 |
| AcuI | CTGAAG | 4 cut(s) | 43, 1602, 2775, 3027 |
| AfaI | GTAC | 5 cut(s) | 403, 1639, 1692, 1820, 2193 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 103, 1100, 1391, 1659, 3086 |
| AflIII | ACRYGT | 4 cut(s) | 45, 340, 544, 2511 |
| AhlI | ACTAGT | 1 cut(s) | 2447 |
| AjiI | CACGTC | 1 cut(s) | 46 |
| AjnI | CCWGG | 6 cut(s) | 203, 416, 952, 1539, 1797, 1850 |
| AleI | CACNNNNGTG | 1 cut(s) | 1371 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2216, 2248 |
| Alw21I | GWGCWC | 3 cut(s) | 1062, 1214, 2700 |
| Alw26I | GTCTC | 1 cut(s) | 734 |
| AlwI | GGATC | 6 cut(s) | 215, 306, 326, 909, 2927, 2940 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1391 |
| Ama87I | CYCGRG | 1 cut(s) | 1029 |
| AoxI | GGCC | 4 cut(s) | 3, 2047, 2242, 2377 |
| ApeKI | GCWGC | 2 cut(s) | 443, 1855 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 571, 783, 1488 |
| AspS9I | GGNCC | 9 cut(s) | 91, 201, 368, 877, 910, 950, 2470, 2981, 3034 |
| AsuC2I | CCSGG | 1 cut(s) | 2270 |
| AsuHPI | GGTGA | 3 cut(s) | 1973, 2138, 2870 |
| AsuII | TTCGAA | 1 cut(s) | 1760 |
| AvaI | CYCGRG | 1 cut(s) | 1029 |
| AvaII | GGWCC | 9 cut(s) | 91, 201, 368, 877, 910, 950, 2470, 2981, 3034 |
| BamHI | GGATCC | 1 cut(s) | 2932 |
| BanI | GGYRCC | 1 cut(s) | 1536 |
| BanII | GRGCYC | 1 cut(s) | 1062 |
| BbsI | GAAGAC | 1 cut(s) | 355 |
| Bbv12I | GWGCWC | 3 cut(s) | 1062, 1214, 2700 |
| BbvI | GCAGC | 2 cut(s) | 430, 1842 |
| BccI | CCATC | 4 cut(s) | 689, 1728, 2203, 2546 |
| BceAI | ACGGC | 1 cut(s) | 1726 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1482, 1516 |
| BciT130I | CCWGG | 6 cut(s) | 205, 418, 954, 1541, 1799, 1852 |
| BciVI | GTATCC | 3 cut(s) | 424, 1006, 2677 |
| BclI | TGATCA | 2 cut(s) | 216, 2608 |
| BcnI | CCSGG | 1 cut(s) | 2270 |
| BcoDI | GTCTC | 1 cut(s) | 734 |
| BcuI | ACTAGT | 1 cut(s) | 2447 |
| BfaI | CTAG | 5 cut(s) | 821, 995, 2448, 2768, 2924 |
| BfmI | CTRYAG | 2 cut(s) | 2202, 2528 |
| BfuAI | ACCTGC | 2 cut(s) | 1821, 3081 |
| BfuI | GTATCC | 3 cut(s) | 424, 1006, 2677 |
| BisI | GCNGC | 2 cut(s) | 444, 1856 |
| BlsI | GCNGC | 2 cut(s) | 445, 1857 |
| Bme1390I | CCNGG | 7 cut(s) | 205, 418, 954, 1541, 1799, 1852, 2270 |
| Bme18I | GGWCC | 9 cut(s) | 91, 201, 368, 877, 910, 950, 2470, 2981, 3034 |
| BmeT110I | CYCGRG | 1 cut(s) | 1029 |
| BmgBI | CACGTC | 1 cut(s) | 46 |
| BmgT120I | GGNCC | 9 cut(s) | 91, 201, 368, 877, 910, 950, 2470, 2981, 3034 |
| BmiI | GGNNCC | 3 cut(s) | 202, 1538, 2934 |
| BmrFI | CCNGG | 7 cut(s) | 205, 418, 954, 1541, 1799, 1852, 2270 |
| BmsI | GCATC | 5 cut(s) | 1087, 1267, 1443, 2693, 3054 |
| BpiI | GAAGAC | 1 cut(s) | 355 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 415, 447 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1448 |
| Bpu14I | TTCGAA | 1 cut(s) | 1760 |
| BpuEI | CTTGAG | 5 cut(s) | 73, 278, 1102, 1880, 1958 |
| BpuMI | CCSGG | 1 cut(s) | 2270 |
| BsaBI | GATNNNNATC | 1 cut(s) | 900 |
| BsaJI | CCNNGG | 3 cut(s) | 196, 953, 2054 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 703, 733 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 103, 1100, 1391, 1659, 3086 |
| Bse118I | RCCGGY | 1 cut(s) | 522 |
| Bse8I | GATNNNNATC | 1 cut(s) | 900 |
| BseBI | CCWGG | 6 cut(s) | 205, 418, 954, 1541, 1799, 1852 |
| BseDI | CCNNGG | 3 cut(s) | 196, 953, 2054 |
| BseGI | GGATG | 4 cut(s) | 1458, 2195, 2231, 2523 |
| BseJI | GATNNNNATC | 1 cut(s) | 900 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 103, 1100, 1391, 1659, 3086 |
| BseMII | CTCAG | 6 cut(s) | 36, 240, 1276, 1462, 1874, 2386 |
| BseRI | GAGGAG | 4 cut(s) | 10, 275, 1675, 2980 |
| BseXI | GCAGC | 2 cut(s) | 430, 1842 |
| BsgI | GTGCAG | 3 cut(s) | 290, 1349, 2461 |
| Bsh1236I | CGCG | 1 cut(s) | 2253 |
| BshFI | GGCC | 4 cut(s) | 5, 2049, 2244, 2379 |
| BshNI | GGYRCC | 1 cut(s) | 1536 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1062, 1214, 2700 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1029 |
| BsiSI | CCGG | 4 cut(s) | 120, 371, 523, 2270 |
| BslFI | GGGAC | 2 cut(s) | 2547, 2552 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 103, 1100, 1391, 1659, 3086 |
| BsmAI | GTCTC | 1 cut(s) | 734 |
| BsmFI | GGGAC | 2 cut(s) | 2547, 2552 |
| BsmI | GAATGC | 3 cut(s) | 925, 1505, 1846 |
| BsnI | GGCC | 4 cut(s) | 5, 2049, 2244, 2379 |
| BsoBI | CYCGRG | 1 cut(s) | 1029 |
| Bsp119I | TTCGAA | 1 cut(s) | 1760 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1062, 1214, 2700 |
| Bsp1407I | TGTACA | 1 cut(s) | 1690 |
| BspACI | CCGC | 6 cut(s) | 176, 187, 478, 1816, 2339, 2481 |
| BspANI | GGCC | 4 cut(s) | 5, 2049, 2244, 2379 |
| BspCNI | CTCAG | 6 cut(s) | 35, 239, 1275, 1461, 1875, 2385 |
| BspFNI | CGCG | 1 cut(s) | 2253 |
| BspHI | TCATGA | 1 cut(s) | 508 |
| BspLI | GGNNCC | 3 cut(s) | 202, 1538, 2934 |
| BspMI | ACCTGC | 2 cut(s) | 1821, 3081 |
| BspPI | GGATC | 6 cut(s) | 215, 306, 326, 909, 2927, 2940 |
| BspQI | GCTCTTC | 1 cut(s) | 438 |
| BspT104I | TTCGAA | 1 cut(s) | 1760 |
| BspT107I | GGYRCC | 1 cut(s) | 1536 |
| BsrFI | RCCGGY | 1 cut(s) | 522 |
| BsrGI | TGTACA | 1 cut(s) | 1690 |
| BssAI | RCCGGY | 1 cut(s) | 522 |
| BssECI | CCNNGG | 3 cut(s) | 196, 953, 2054 |
| BssNAI | GTATAC | 1 cut(s) | 2910 |
| BssT1I | CCWWGG | 2 cut(s) | 196, 2054 |
| Bst1107I | GTATAC | 1 cut(s) | 2910 |
| Bst2UI | CCWGG | 6 cut(s) | 205, 418, 954, 1541, 1799, 1852 |
| Bst4CI | ACNGT | 4 cut(s) | 1139, 1429, 1961, 2665 |
| Bst6I | CTCTTC | 4 cut(s) | 438, 1041, 1578, 1762 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1462 |
| BstAUI | TGTACA | 1 cut(s) | 1690 |
| BstBI | TTCGAA | 1 cut(s) | 1760 |
| BstC8I | GCNNGC | 6 cut(s) | 189, 472, 476, 524, 1074, 2431 |
| BstDEI | CTNAG | 7 cut(s) | 22, 226, 1262, 1448, 1883, 2357, 2372 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 101, 1098 |
| BstF5I | GGATG | 4 cut(s) | 1458, 2195, 2231, 2523 |
| BstFNI | CGCG | 1 cut(s) | 2253 |
| BstMAI | GTCTC | 1 cut(s) | 734 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1453, 1462, 1509, 1852, 2250 |
| BstNI | CCWGG | 6 cut(s) | 205, 418, 954, 1541, 1799, 1852 |
| BstNSI | RCATGY | 4 cut(s) | 344, 548, 1076, 2515 |
| BstSCI | CCNGG | 7 cut(s) | 203, 416, 952, 1539, 1797, 1850, 2268 |
| BstSFI | CTRYAG | 2 cut(s) | 2202, 2528 |
| BstUI | CGCG | 1 cut(s) | 2253 |
| BstV1I | GCAGC | 2 cut(s) | 430, 1842 |
| BstV2I | GAAGAC | 1 cut(s) | 355 |
| BstX2I | RGATCY | 2 cut(s) | 207, 2932 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1991 |
| BstYI | RGATCY | 2 cut(s) | 207, 2932 |
| BstZ17I | GTATAC | 1 cut(s) | 2910 |
| BsuI | GTATCC | 3 cut(s) | 424, 1006, 2677 |
| BsuRI | GGCC | 4 cut(s) | 5, 2049, 2244, 2379 |
| BtgZI | GCGATG | 1 cut(s) | 3077 |
| BtrI | CACGTC | 1 cut(s) | 46 |
| BtsCI | GGATG | 4 cut(s) | 1458, 2195, 2231, 2523 |
| BtsI | GCAGTG | 1 cut(s) | 2473 |
| BveI | ACCTGC | 2 cut(s) | 1821, 3081 |
| Cac8I | GCNNGC | 6 cut(s) | 189, 472, 476, 524, 1074, 2431 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1391 |
| CciI | TCATGA | 1 cut(s) | 508 |
| Cfr10I | RCCGGY | 1 cut(s) | 522 |
| Cfr13I | GGNCC | 9 cut(s) | 91, 201, 368, 877, 910, 950, 2470, 2981, 3034 |
| CsiI | ACCWGGT | 1 cut(s) | 1797 |
| Csp6I | GTAC | 5 cut(s) | 402, 1638, 1691, 1819, 2192 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1107, 1142 |
| CviQI | GTAC | 5 cut(s) | 402, 1638, 1691, 1819, 2192 |
| DdeI | CTNAG | 7 cut(s) | 22, 226, 1262, 1448, 1883, 2357, 2372 |
| DraI | TTTAAA | 3 cut(s) | 1081, 1186, 1605 |
| Eam1104I | CTCTTC | 4 cut(s) | 438, 1041, 1578, 1762 |
| EarI | CTCTTC | 4 cut(s) | 438, 1041, 1578, 1762 |
| Ecl136II | GAGCTC | 1 cut(s) | 1060 |
| Eco130I | CCWWGG | 2 cut(s) | 196, 2054 |
| Eco147I | AGGCCT | 1 cut(s) | 2244 |
| Eco24I | GRGCYC | 1 cut(s) | 1062 |
| Eco32I | GATATC | 2 cut(s) | 589, 2148 |
| Eco47I | GGWCC | 9 cut(s) | 91, 201, 368, 877, 910, 950, 2470, 2981, 3034 |
| Eco53kI | GAGCTC | 1 cut(s) | 1060 |
| Eco57I | CTGAAG | 4 cut(s) | 43, 1602, 2775, 3027 |
| Eco88I | CYCGRG | 1 cut(s) | 1029 |
| EcoICRI | GAGCTC | 1 cut(s) | 1060 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 101, 1098 |
| EcoO109I | RGGNCCY | 1 cut(s) | 877 |
| EcoRII | CCWGG | 6 cut(s) | 203, 416, 952, 1539, 1797, 1850 |
| EcoRV | GATATC | 2 cut(s) | 589, 2148 |
| EcoT14I | CCWWGG | 2 cut(s) | 196, 2054 |
| EcoT22I | ATGCAT | 2 cut(s) | 925, 1458 |
| EcoT38I | GRGCYC | 1 cut(s) | 1062 |
| ErhI | CCWWGG | 2 cut(s) | 196, 2054 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 768, 800, 846, 878, 1996, 2028 |
| FaqI | GGGAC | 2 cut(s) | 2547, 2552 |
| FauI | CCCGC | 3 cut(s) | 180, 471, 2332 |
| FauNDI | CATATG | 1 cut(s) | 2593 |
| FbaI | TGATCA | 2 cut(s) | 216, 2608 |
| FblI | GTMKAC | 1 cut(s) | 2909 |
| Fnu4HI | GCNGC | 2 cut(s) | 444, 1856 |
| FokI | GGATG | 4 cut(s) | 1465, 2182, 2218, 2510 |
| FriOI | GRGCYC | 1 cut(s) | 1062 |
| Fsp4HI | GCNGC | 2 cut(s) | 444, 1856 |
| FspBI | CTAG | 5 cut(s) | 821, 995, 2448, 2768, 2924 |
| GluI | GCNGC | 2 cut(s) | 444, 1856 |
| HaeIII | GGCC | 4 cut(s) | 5, 2049, 2244, 2379 |
| HapII | CCGG | 4 cut(s) | 120, 371, 523, 2270 |
| HincII | GTYRAC | 3 cut(s) | 127, 892, 2869 |
| HindII | GTYRAC | 3 cut(s) | 127, 892, 2869 |
| HindIII | AAGCTT | 1 cut(s) | 1270 |
| HpaII | CCGG | 4 cut(s) | 120, 371, 523, 2270 |
| HphI | GGTGA | 3 cut(s) | 1973, 2138, 2870 |
| Hpy166II | GTNNAC | 8 cut(s) | 127, 892, 910, 1148, 2354, 2470, 2869, 2910 |
| Hpy8I | GTNNAC | 8 cut(s) | 127, 892, 910, 1148, 2354, 2470, 2869, 2910 |
| HpyCH4III | ACNGT | 4 cut(s) | 1139, 1429, 1961, 2665 |
| HpyCH4IV | ACGT | 6 cut(s) | 31, 45, 1414, 1522, 2263, 2871 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1453, 1462, 1509, 1852, 2250 |
| HpyF3I | CTNAG | 7 cut(s) | 22, 226, 1262, 1448, 1883, 2357, 2372 |
| HpySE526I | ACGT | 6 cut(s) | 31, 45, 1414, 1522, 2263, 2871 |
| KroI | GCCGGC | 1 cut(s) | 522 |
| KroNI | GCCGGC | 1 cut(s) | 524 |
| Ksp22I | TGATCA | 2 cut(s) | 216, 2608 |
| LguI | GCTCTTC | 1 cut(s) | 438 |
| LmnI | GCTCC | 6 cut(s) | 262, 440, 1191, 1680, 1843, 3070 |
| Lsp1109I | GCAGC | 2 cut(s) | 430, 1842 |
| LweI | GCATC | 5 cut(s) | 1087, 1267, 1443, 2693, 3054 |
| MabI | ACCWGGT | 1 cut(s) | 1797 |
| MaeI | CTAG | 5 cut(s) | 821, 995, 2448, 2768, 2924 |
| MaeII | ACGT | 6 cut(s) | 31, 45, 1414, 1522, 2263, 2871 |
| MaeIII | GTNAC | 6 cut(s) | 497, 612, 1129, 1423, 2728, 2858 |
| MfeI | CAATTG | 2 cut(s) | 302, 1281 |
| MflI | RGATCY | 2 cut(s) | 207, 2932 |
| MhlI | GDGCHC | 3 cut(s) | 1062, 1214, 2700 |
| MlyI | GAGTC | 8 cut(s) | 132, 967, 1021, 1590, 1894, 2194, 2978, 3014 |
| MmeI | TCCRAC | 6 cut(s) | 14, 544, 613, 1702, 2442, 2532 |
| Mph1103I | ATGCAT | 2 cut(s) | 925, 1458 |
| MroNI | GCCGGC | 1 cut(s) | 522 |
| MroXI | GAANNNNTTC | 3 cut(s) | 571, 783, 1488 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1371, 1893, 2180 |
| MspA1I | CMGCKG | 2 cut(s) | 176, 1371 |
| MspI | CCGG | 4 cut(s) | 120, 371, 523, 2270 |
| MspR9I | CCNGG | 7 cut(s) | 205, 418, 954, 1541, 1799, 1852, 2270 |
| MunI | CAATTG | 2 cut(s) | 302, 1281 |
| Mva1269I | GAATGC | 3 cut(s) | 925, 1505, 1846 |
| MvaI | CCWGG | 6 cut(s) | 205, 418, 954, 1541, 1799, 1852 |
| MvnI | CGCG | 1 cut(s) | 2253 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1453, 1462, 1509, 1852, 2250 |
| NaeI | GCCGGC | 1 cut(s) | 524 |
| NciI | CCSGG | 1 cut(s) | 2270 |
| NdeI | CATATG | 1 cut(s) | 2593 |
| NgoMIV | GCCGGC | 1 cut(s) | 522 |
| NlaIV | GGNNCC | 3 cut(s) | 202, 1538, 2934 |
| NmuCI | GTSAC | 3 cut(s) | 612, 1129, 2858 |
| NsiI | ATGCAT | 2 cut(s) | 925, 1458 |
| NspI | RCATGY | 4 cut(s) | 344, 548, 1076, 2515 |
| NspV | TTCGAA | 1 cut(s) | 1760 |
| OliI | CACNNNNGTG | 1 cut(s) | 1371 |
| PaeI | GCATGC | 1 cut(s) | 1076 |
| PaeR7I | CTCGAG | 1 cut(s) | 1029 |
| PagI | TCATGA | 1 cut(s) | 508 |
| PceI | AGGCCT | 1 cut(s) | 2244 |
| PciI | ACATGT | 3 cut(s) | 340, 544, 2511 |
| PciSI | GCTCTTC | 1 cut(s) | 438 |
| PctI | GAATGC | 3 cut(s) | 925, 1505, 1846 |
| PdiI | GCCGGC | 1 cut(s) | 524 |
| PdmI | GAANNNNTTC | 3 cut(s) | 571, 783, 1488 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1391 |
| PfoI | TCCNGGA | 2 cut(s) | 203, 2268 |
| PkrI | GCNGC | 2 cut(s) | 445, 1857 |
| PleI | GAGTC | 8 cut(s) | 131, 966, 1021, 1590, 1893, 2193, 2977, 3014 |
| PpsI | GAGTC | 8 cut(s) | 131, 966, 1021, 1590, 1893, 2193, 2977, 3014 |
| PpuMI | RGGWCCY | 1 cut(s) | 877 |
| PscI | ACATGT | 3 cut(s) | 340, 544, 2511 |
| PsiI | TTATAA | 2 cut(s) | 968, 2067 |
| Psp124BI | GAGCTC | 1 cut(s) | 1062 |
| Psp1406I | AACGTT | 2 cut(s) | 31, 1414 |
| Psp5II | RGGWCCY | 1 cut(s) | 877 |
| Psp6I | CCWGG | 6 cut(s) | 203, 416, 952, 1539, 1797, 1850 |
| PspGI | CCWGG | 6 cut(s) | 203, 416, 952, 1539, 1797, 1850 |
| PspN4I | GGNNCC | 3 cut(s) | 202, 1538, 2934 |
| PspPI | GGNCC | 9 cut(s) | 91, 201, 368, 877, 910, 950, 2470, 2981, 3034 |
| PspPPI | RGGWCCY | 1 cut(s) | 877 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 32, 64, 521, 553 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1391 |
| PsuI | RGATCY | 2 cut(s) | 207, 2932 |
| PvuII | CAGCTG | 1 cut(s) | 1371 |
| RsaI | GTAC | 5 cut(s) | 403, 1639, 1692, 1820, 2193 |
| RsaNI | GTAC | 5 cut(s) | 402, 1638, 1691, 1819, 2192 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1371, 1893, 2180 |
| SacI | GAGCTC | 1 cut(s) | 1062 |
| SapI | GCTCTTC | 1 cut(s) | 438 |
| SatI | GCNGC | 2 cut(s) | 444, 1856 |
| Sau96I | GGNCC | 9 cut(s) | 91, 201, 368, 877, 910, 950, 2470, 2981, 3034 |
| SchI | GAGTC | 8 cut(s) | 132, 967, 1021, 1590, 1894, 2194, 2978, 3014 |
| ScrFI | CCNGG | 7 cut(s) | 205, 418, 954, 1541, 1799, 1852, 2270 |
| SduI | GDGCHC | 3 cut(s) | 1062, 1214, 2700 |
| SexAI | ACCWGGT | 1 cut(s) | 1797 |
| SfaNI | GCATC | 5 cut(s) | 1087, 1267, 1443, 2693, 3054 |
| SfcI | CTRYAG | 2 cut(s) | 2202, 2528 |
| Sfr274I | CTCGAG | 1 cut(s) | 1029 |
| SfuI | TTCGAA | 1 cut(s) | 1760 |
| SinI | GGWCC | 9 cut(s) | 91, 201, 368, 877, 910, 950, 2470, 2981, 3034 |
| SlaI | CTCGAG | 1 cut(s) | 1029 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1371, 1893, 2180 |
| SmlI | CTYRAG | 6 cut(s) | 52, 257, 1029, 1117, 1859, 1937 |
| SmoI | CTYRAG | 6 cut(s) | 52, 257, 1029, 1117, 1859, 1937 |
| SpeI | ACTAGT | 1 cut(s) | 2447 |
| SphI | GCATGC | 1 cut(s) | 1076 |
| SseBI | AGGCCT | 1 cut(s) | 2244 |
| SsiI | CCGC | 6 cut(s) | 176, 187, 478, 1816, 2339, 2481 |
| SspI | AATATT | 1 cut(s) | 2575 |
| SspMI | CTAG | 5 cut(s) | 821, 995, 2448, 2768, 2924 |
| SstI | GAGCTC | 1 cut(s) | 1062 |
| StuI | AGGCCT | 1 cut(s) | 2244 |
| StyD4I | CCNGG | 7 cut(s) | 203, 416, 952, 1539, 1797, 1850, 2268 |
| StyI | CCWWGG | 2 cut(s) | 196, 2054 |
| TaaI | ACNGT | 4 cut(s) | 1139, 1429, 1961, 2665 |
| TaiI | ACGT | 6 cut(s) | 34, 48, 1417, 1525, 2266, 2874 |
| TaqII | GACCGA | 1 cut(s) | 3051 |
| TatI | WGTACW | 2 cut(s) | 1637, 1690 |
| TseFI | GTSAC | 3 cut(s) | 612, 1129, 2858 |
| TseI | GCWGC | 2 cut(s) | 443, 1855 |
| Tsp45I | GTSAC | 3 cut(s) | 612, 1129, 2858 |
| TspGWI | ACGGA | 5 cut(s) | 104, 1388, 1580, 2551, 2659 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1391 |
| VpaK11BI | GGWCC | 9 cut(s) | 91, 201, 368, 877, 910, 950, 2470, 2981, 3034 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 101, 1098 |
| XceI | RCATGY | 4 cut(s) | 344, 548, 1076, 2515 |
| XhoI | CTCGAG | 1 cut(s) | 1029 |
| XmiI | GTMKAC | 1 cut(s) | 2909 |
| XmnI | GAANNNNTTC | 3 cut(s) | 571, 783, 1488 |
| XspI | CTAG | 5 cut(s) | 821, 995, 2448, 2768, 2924 |
| Zsp2I | ATGCAT | 2 cut(s) | 925, 1458 |