TMV resistance protein N-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 231, 1086 |
| AclWI | GGATC | 1 cut(s) | 756 |
| AcsI | RAATTY | 3 cut(s) | 862, 869, 1098 |
| AcuI | CTGAAG | 3 cut(s) | 188, 622, 769 |
| AfaI | GTAC | 1 cut(s) | 510 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 335, 898 |
| AgsI | TTSAA | 8 cut(s) | 214, 284, 371, 418, 565, 798, 806, 868 |
| AhlI | ACTAGT | 1 cut(s) | 142 |
| AjnI | CCWGG | 2 cut(s) | 979, 984 |
| AluBI | AGCT | 7 cut(s) | 40, 303, 385, 636, 783, 802, 1046 |
| AluI | AGCT | 7 cut(s) | 40, 303, 385, 636, 783, 802, 1046 |
| Alw21I | GWGCWC | 1 cut(s) | 42 |
| Alw26I | GTCTC | 2 cut(s) | 7, 422 |
| AlwI | GGATC | 1 cut(s) | 756 |
| Ama87I | CYCGRG | 1 cut(s) | 26 |
| AoxI | GGCC | 1 cut(s) | 982 |
| ApeKI | GCWGC | 2 cut(s) | 165, 593 |
| ApoI | RAATTY | 3 cut(s) | 862, 869, 1098 |
| AseI | ATTAAT | 1 cut(s) | 222 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 60 |
| AspLEI | GCGC | 3 cut(s) | 87, 598, 689 |
| AsuHPI | GGTGA | 6 cut(s) | 246, 317, 373, 617, 646, 656 |
| AvaI | CYCGRG | 1 cut(s) | 26 |
| BaeGI | GKGCMC | 1 cut(s) | 1156 |
| BanII | GRGCYC | 1 cut(s) | 42 |
| BauI | CACGAG | 1 cut(s) | 1157 |
| Bbv12I | GWGCWC | 1 cut(s) | 42 |
| BbvI | GCAGC | 2 cut(s) | 177, 605 |
| BccI | CCATC | 3 cut(s) | 487, 695, 1068 |
| BciT130I | CCWGG | 2 cut(s) | 981, 986 |
| BclI | TGATCA | 1 cut(s) | 646 |
| BcoDI | GTCTC | 2 cut(s) | 7, 422 |
| BcuI | ACTAGT | 1 cut(s) | 142 |
| BfaI | CTAG | 1 cut(s) | 143 |
| BfmI | CTRYAG | 2 cut(s) | 409, 1067 |
| BfoI | RGCGCY | 1 cut(s) | 599 |
| BisI | GCNGC | 2 cut(s) | 166, 594 |
| BlsI | GCNGC | 2 cut(s) | 167, 595 |
| BmcAI | AGTACT | 1 cut(s) | 510 |
| Bme1390I | CCNGG | 2 cut(s) | 981, 986 |
| BmeT110I | CYCGRG | 1 cut(s) | 26 |
| BmiI | GGNNCC | 3 cut(s) | 193, 235, 978 |
| BmrFI | CCNGG | 2 cut(s) | 981, 986 |
| BmsI | GCATC | 3 cut(s) | 86, 868, 1123 |
| BsaJI | CCNNGG | 2 cut(s) | 398, 711 |
| BsaWI | WCCGGW | 2 cut(s) | 115, 256 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 335, 898 |
| Bse1I | ACTGG | 1 cut(s) | 237 |
| BseBI | CCWGG | 2 cut(s) | 981, 986 |
| BseDI | CCNNGG | 2 cut(s) | 398, 711 |
| BseGI | GGATG | 8 cut(s) | 124, 380, 527, 883, 1062, 1079, 1138, 1150 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 335, 898 |
| BseMII | CTCAG | 2 cut(s) | 241, 963 |
| BseNI | ACTGG | 1 cut(s) | 237 |
| BseSI | GKGCMC | 1 cut(s) | 1156 |
| BseXI | GCAGC | 2 cut(s) | 177, 605 |
| BsgI | GTGCAG | 1 cut(s) | 1015 |
| BshFI | GGCC | 1 cut(s) | 984 |
| BsiHKAI | GWGCWC | 1 cut(s) | 42 |
| BsiHKCI | CYCGRG | 1 cut(s) | 26 |
| BsiSI | CCGG | 2 cut(s) | 116, 257 |
| BslFI | GGGAC | 2 cut(s) | 257, 692 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 335, 898 |
| BsmAI | GTCTC | 2 cut(s) | 7, 422 |
| BsmFI | GGGAC | 2 cut(s) | 257, 692 |
| BsnI | GGCC | 1 cut(s) | 984 |
| BsoBI | CYCGRG | 1 cut(s) | 26 |
| Bsp1286I | GDGCHC | 2 cut(s) | 42, 1156 |
| Bsp143I | GATC | 3 cut(s) | 159, 646, 748 |
| BspACI | CCGC | 2 cut(s) | 231, 1086 |
| BspANI | GGCC | 1 cut(s) | 984 |
| BspCNI | CTCAG | 2 cut(s) | 240, 964 |
| BspLI | GGNNCC | 3 cut(s) | 193, 235, 978 |
| BspPI | GGATC | 1 cut(s) | 756 |
| BsrI | ACTGG | 1 cut(s) | 237 |
| BssECI | CCNNGG | 2 cut(s) | 398, 711 |
| BssMI | GATC | 3 cut(s) | 159, 646, 748 |
| BssSI | CACGAG | 1 cut(s) | 1157 |
| BssT1I | CCWWGG | 2 cut(s) | 398, 711 |
| Bst2BI | CACGAG | 1 cut(s) | 1157 |
| Bst2UI | CCWGG | 2 cut(s) | 981, 986 |
| Bst4CI | ACNGT | 4 cut(s) | 433, 556, 626, 816 |
| Bst6I | CTCTTC | 2 cut(s) | 279, 399 |
| BstC8I | GCNNGC | 1 cut(s) | 89 |
| BstDEI | CTNAG | 3 cut(s) | 11, 227, 972 |
| BstF5I | GGATG | 8 cut(s) | 124, 380, 527, 883, 1062, 1079, 1138, 1150 |
| BstH2I | RGCGCY | 1 cut(s) | 599 |
| BstHHI | GCGC | 3 cut(s) | 87, 598, 689 |
| BstKTI | GATC | 3 cut(s) | 162, 649, 751 |
| BstMAI | GTCTC | 2 cut(s) | 7, 422 |
| BstMBI | GATC | 3 cut(s) | 159, 646, 748 |
| BstNI | CCWGG | 2 cut(s) | 981, 986 |
| BstNSI | RCATGY | 1 cut(s) | 950 |
| BstSCI | CCNGG | 2 cut(s) | 979, 984 |
| BstSFI | CTRYAG | 2 cut(s) | 409, 1067 |
| BstSLI | GKGCMC | 1 cut(s) | 1156 |
| BstV1I | GCAGC | 2 cut(s) | 177, 605 |
| BstX2I | RGATCY | 1 cut(s) | 748 |
| BstYI | RGATCY | 1 cut(s) | 748 |
| BsuRI | GGCC | 1 cut(s) | 984 |
| BtsCI | GGATG | 8 cut(s) | 124, 380, 527, 883, 1062, 1079, 1138, 1150 |
| BtsIMutI | CAGTG | 3 cut(s) | 646, 793, 969 |
| Cac8I | GCNNGC | 1 cut(s) | 89 |
| CfoI | GCGC | 3 cut(s) | 87, 598, 689 |
| Csp6I | GTAC | 1 cut(s) | 509 |
| CviAII | CATG | 4 cut(s) | 476, 947, 960, 1006 |
| CviJI | RGCY | 8 cut(s) | 40, 303, 385, 636, 783, 802, 984, 1046 |
| CviKI_1 | RGCY | 8 cut(s) | 40, 303, 385, 636, 783, 802, 984, 1046 |
| CviQI | GTAC | 1 cut(s) | 509 |
| DdeI | CTNAG | 3 cut(s) | 11, 227, 972 |
| DpnI | GATC | 3 cut(s) | 161, 648, 750 |
| DpnII | GATC | 3 cut(s) | 159, 646, 748 |
| Eam1104I | CTCTTC | 2 cut(s) | 279, 399 |
| EarI | CTCTTC | 2 cut(s) | 279, 399 |
| Ecl136II | GAGCTC | 1 cut(s) | 40 |
| Eco130I | CCWWGG | 2 cut(s) | 398, 711 |
| Eco147I | AGGCCT | 1 cut(s) | 984 |
| Eco24I | GRGCYC | 1 cut(s) | 42 |
| Eco53kI | GAGCTC | 1 cut(s) | 40 |
| Eco57I | CTGAAG | 3 cut(s) | 188, 622, 769 |
| Eco88I | CYCGRG | 1 cut(s) | 26 |
| EcoICRI | GAGCTC | 1 cut(s) | 40 |
| EcoRII | CCWGG | 2 cut(s) | 979, 984 |
| EcoT14I | CCWWGG | 2 cut(s) | 398, 711 |
| EcoT38I | GRGCYC | 1 cut(s) | 42 |
| ErhI | CCWWGG | 2 cut(s) | 398, 711 |
| FaeI | CATG | 4 cut(s) | 479, 950, 963, 1009 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 340, 372 |
| FaqI | GGGAC | 2 cut(s) | 257, 692 |
| FatI | CATG | 4 cut(s) | 475, 946, 959, 1005 |
| FauNDI | CATATG | 2 cut(s) | 616, 1020 |
| FbaI | TGATCA | 1 cut(s) | 646 |
| Fnu4HI | GCNGC | 2 cut(s) | 166, 594 |
| FokI | GGATG | 8 cut(s) | 131, 387, 514, 890, 1049, 1086, 1145, 1157 |
| FriOI | GRGCYC | 1 cut(s) | 42 |
| Fsp4HI | GCNGC | 2 cut(s) | 166, 594 |
| FspBI | CTAG | 1 cut(s) | 143 |
| GlaI | GCGC | 3 cut(s) | 86, 597, 688 |
| GluI | GCNGC | 2 cut(s) | 166, 594 |
| HaeII | RGCGCY | 1 cut(s) | 599 |
| HaeIII | GGCC | 1 cut(s) | 984 |
| HapII | CCGG | 2 cut(s) | 116, 257 |
| HhaI | GCGC | 3 cut(s) | 87, 598, 689 |
| Hin1II | CATG | 4 cut(s) | 479, 950, 963, 1009 |
| Hin6I | GCGC | 3 cut(s) | 85, 596, 687 |
| HinP1I | GCGC | 3 cut(s) | 85, 596, 687 |
| HincII | GTYRAC | 1 cut(s) | 539 |
| HindII | GTYRAC | 1 cut(s) | 539 |
| HindIII | AAGCTT | 4 cut(s) | 383, 634, 781, 800 |
| HinfI | GANTC | 9 cut(s) | 322, 351, 462, 497, 705, 724, 956, 1015, 1089 |
| HpaII | CCGG | 2 cut(s) | 116, 257 |
| HphI | GGTGA | 6 cut(s) | 246, 317, 373, 617, 646, 656 |
| Hpy166II | GTNNAC | 2 cut(s) | 364, 539 |
| Hpy188I | TCNGA | 4 cut(s) | 207, 461, 467, 922 |
| Hpy188III | TCNNGA | 5 cut(s) | 28, 134, 281, 875, 1124 |
| Hpy8I | GTNNAC | 2 cut(s) | 364, 539 |
| HpyAV | CCTTC | 1 cut(s) | 365 |
| HpyCH4III | ACNGT | 4 cut(s) | 433, 556, 626, 816 |
| HpyCH4IV | ACGT | 1 cut(s) | 33 |
| HpyCH4V | TGCA | 7 cut(s) | 106, 475, 828, 896, 946, 963, 1032 |
| HpyF3I | CTNAG | 3 cut(s) | 11, 227, 972 |
| HpySE526I | ACGT | 1 cut(s) | 33 |
| Hsp92II | CATG | 4 cut(s) | 479, 950, 963, 1009 |
| HspAI | GCGC | 3 cut(s) | 85, 596, 687 |
| Ksp22I | TGATCA | 1 cut(s) | 646 |
| Kzo9I | GATC | 3 cut(s) | 159, 646, 748 |
| Lsp1109I | GCAGC | 2 cut(s) | 177, 605 |
| LweI | GCATC | 3 cut(s) | 86, 868, 1123 |
| MaeI | CTAG | 1 cut(s) | 143 |
| MaeII | ACGT | 1 cut(s) | 33 |
| MaeIII | GTNAC | 3 cut(s) | 377, 674, 1025 |
| MalI | GATC | 3 cut(s) | 161, 648, 750 |
| MboI | GATC | 3 cut(s) | 159, 646, 748 |
| MboII | GAAGA | 7 cut(s) | 53, 296, 386, 428, 577, 827, 1069 |
| MflI | RGATCY | 1 cut(s) | 748 |
| MhlI | GDGCHC | 2 cut(s) | 42, 1156 |
| MluCI | AATT | 7 cut(s) | 246, 455, 729, 862, 869, 913, 1098 |
| MlyI | GAGTC | 4 cut(s) | 345, 714, 733, 1083 |
| MmeI | TCCRAC | 1 cut(s) | 1122 |
| MnlI | CCTC | 8 cut(s) | 35, 181, 340, 472, 749, 967, 1115, 1123 |
| MroXI | GAANNNNTTC | 1 cut(s) | 60 |
| MslI | CAYNNNNRTG | 1 cut(s) | 951 |
| MspA1I | CMGCKG | 2 cut(s) | 231, 1046 |
| MspI | CCGG | 2 cut(s) | 116, 257 |
| MspR9I | CCNGG | 2 cut(s) | 981, 986 |
| MvaI | CCWGG | 2 cut(s) | 981, 986 |
| NdeI | CATATG | 2 cut(s) | 616, 1020 |
| NdeII | GATC | 3 cut(s) | 159, 646, 748 |
| NlaIII | CATG | 4 cut(s) | 479, 950, 963, 1009 |
| NlaIV | GGNNCC | 3 cut(s) | 193, 235, 978 |
| NmuCI | GTSAC | 2 cut(s) | 377, 674 |
| NspI | RCATGY | 1 cut(s) | 950 |
| PaeR7I | CTCGAG | 1 cut(s) | 26 |
| PceI | AGGCCT | 1 cut(s) | 984 |
| PdmI | GAANNNNTTC | 1 cut(s) | 60 |
| PfeI | GAWTC | 5 cut(s) | 322, 462, 497, 956, 1015 |
| PkrI | GCNGC | 2 cut(s) | 167, 595 |
| PleI | GAGTC | 4 cut(s) | 345, 713, 732, 1083 |
| PpsI | GAGTC | 4 cut(s) | 345, 713, 732, 1083 |
| PshBI | ATTAAT | 1 cut(s) | 222 |
| Psp124BI | GAGCTC | 1 cut(s) | 42 |
| Psp6I | CCWGG | 2 cut(s) | 979, 984 |
| PspGI | CCWGG | 2 cut(s) | 979, 984 |
| PspN4I | GGNNCC | 3 cut(s) | 193, 235, 978 |
| PsuI | RGATCY | 1 cut(s) | 748 |
| PvuII | CAGCTG | 1 cut(s) | 1046 |
| RsaI | GTAC | 1 cut(s) | 510 |
| RsaNI | GTAC | 1 cut(s) | 509 |
| RseI | CAYNNNNRTG | 1 cut(s) | 951 |
| SacI | GAGCTC | 1 cut(s) | 42 |
| SatI | GCNGC | 2 cut(s) | 166, 594 |
| Sau3AI | GATC | 3 cut(s) | 159, 646, 748 |
| ScaI | AGTACT | 1 cut(s) | 510 |
| SchI | GAGTC | 4 cut(s) | 345, 714, 733, 1083 |
| ScrFI | CCNGG | 2 cut(s) | 981, 986 |
| SduI | GDGCHC | 2 cut(s) | 42, 1156 |
| SfaNI | GCATC | 3 cut(s) | 86, 868, 1123 |
| SfcI | CTRYAG | 2 cut(s) | 409, 1067 |
| Sfr274I | CTCGAG | 1 cut(s) | 26 |
| SlaI | CTCGAG | 1 cut(s) | 26 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 951 |
| SmlI | CTYRAG | 1 cut(s) | 26 |
| SmoI | CTYRAG | 1 cut(s) | 26 |
| SpeI | ACTAGT | 1 cut(s) | 142 |
| Sse9I | AATT | 7 cut(s) | 246, 455, 729, 862, 869, 913, 1098 |
| SseBI | AGGCCT | 1 cut(s) | 984 |
| SsiI | CCGC | 2 cut(s) | 231, 1086 |
| SspI | AATATT | 1 cut(s) | 743 |
| SspMI | CTAG | 1 cut(s) | 143 |
| SstI | GAGCTC | 1 cut(s) | 42 |
| StuI | AGGCCT | 1 cut(s) | 984 |
| StyD4I | CCNGG | 2 cut(s) | 979, 984 |
| StyI | CCWWGG | 2 cut(s) | 398, 711 |
| TaaI | ACNGT | 4 cut(s) | 433, 556, 626, 816 |
| TaiI | ACGT | 1 cut(s) | 36 |
| TaqI | TCGA | 1 cut(s) | 27 |
| TasI | AATT | 7 cut(s) | 246, 455, 729, 862, 869, 913, 1098 |
| TatI | WGTACW | 1 cut(s) | 508 |
| TfiI | GAWTC | 5 cut(s) | 322, 462, 497, 956, 1015 |
| TscAI | CASTG | 3 cut(s) | 646, 793, 976 |
| TseFI | GTSAC | 2 cut(s) | 377, 674 |
| TseI | GCWGC | 2 cut(s) | 165, 593 |
| Tsp45I | GTSAC | 2 cut(s) | 377, 674 |
| TspDTI | ATGAA | 8 cut(s) | 17, 603, 653, 758, 827, 941, 948, 1007 |
| TspRI | CASTG | 3 cut(s) | 646, 793, 976 |
| VspI | ATTAAT | 1 cut(s) | 222 |
| XapI | RAATTY | 3 cut(s) | 862, 869, 1098 |
| XceI | RCATGY | 1 cut(s) | 950 |
| XhoI | CTCGAG | 1 cut(s) | 26 |
| XmnI | GAANNNNTTC | 1 cut(s) | 60 |
| XspI | CTAG | 1 cut(s) | 143 |
| ZrmI | AGTACT | 1 cut(s) | 510 |