TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 93 - 162 | 1.8e-14 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 276, 410, 864 |
| AccB1I | GGYRCC | 1 cut(s) | 402 |
| AccI | GTMKAC | 2 cut(s) | 175, 511 |
| AciI | CCGC | 3 cut(s) | 517, 802, 857 |
| AcsI | RAATTY | 1 cut(s) | 832 |
| AcuI | CTGAAG | 1 cut(s) | 585 |
| AfaI | GTAC | 3 cut(s) | 625, 752, 843 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 857 |
| AgsI | TTSAA | 8 cut(s) | 68, 98, 419, 452, 527, 575, 697, 748 |
| AjnI | CCWGG | 1 cut(s) | 496 |
| AluBI | AGCT | 7 cut(s) | 14, 46, 198, 258, 672, 682, 693 |
| AluI | AGCT | 7 cut(s) | 14, 46, 198, 258, 672, 682, 693 |
| Alw21I | GWGCWC | 2 cut(s) | 684, 765 |
| ApoI | RAATTY | 1 cut(s) | 832 |
| AsuHPI | GGTGA | 1 cut(s) | 840 |
| BanI | GGYRCC | 1 cut(s) | 402 |
| BanII | GRGCYC | 1 cut(s) | 684 |
| Bbv12I | GWGCWC | 2 cut(s) | 684, 765 |
| BccI | CCATC | 3 cut(s) | 257, 498, 714 |
| BceAI | ACGGC | 2 cut(s) | 121, 680 |
| BciT130I | CCWGG | 1 cut(s) | 498 |
| BfaI | CTAG | 2 cut(s) | 615, 854 |
| BlpI | GCTNAGC | 1 cut(s) | 668 |
| Bme1390I | CCNGG | 1 cut(s) | 498 |
| BmiI | GGNNCC | 3 cut(s) | 160, 404, 521 |
| BmrFI | CCNGG | 1 cut(s) | 498 |
| BmsI | GCATC | 1 cut(s) | 426 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 668 |
| BpuEI | CTTGAG | 1 cut(s) | 62 |
| BsaBI | GATNNNNATC | 1 cut(s) | 276 |
| BsaJI | CCNNGG | 1 cut(s) | 837 |
| BsaWI | WCCGGW | 1 cut(s) | 223 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 857 |
| Bse8I | GATNNNNATC | 1 cut(s) | 276 |
| BseBI | CCWGG | 1 cut(s) | 498 |
| BseDI | CCNNGG | 1 cut(s) | 837 |
| BseJI | GATNNNNATC | 1 cut(s) | 276 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 857 |
| BseMII | CTCAG | 2 cut(s) | 682, 829 |
| BseRI | GAGGAG | 2 cut(s) | 47, 151 |
| BshNI | GGYRCC | 1 cut(s) | 402 |
| BsiHKAI | GWGCWC | 2 cut(s) | 684, 765 |
| BsiSI | CCGG | 2 cut(s) | 224, 758 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 857 |
| Bsp1286I | GDGCHC | 2 cut(s) | 684, 765 |
| Bsp143I | GATC | 2 cut(s) | 331, 796 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 668 |
| BspACI | CCGC | 3 cut(s) | 517, 802, 857 |
| BspCNI | CTCAG | 2 cut(s) | 681, 828 |
| BspLI | GGNNCC | 3 cut(s) | 160, 404, 521 |
| BspT107I | GGYRCC | 1 cut(s) | 402 |
| BssECI | CCNNGG | 1 cut(s) | 837 |
| BssMI | GATC | 2 cut(s) | 331, 796 |
| BssT1I | CCWWGG | 1 cut(s) | 837 |
| Bst2UI | CCWGG | 1 cut(s) | 498 |
| Bst4CI | ACNGT | 3 cut(s) | 125, 402, 415 |
| Bst6I | CTCTTC | 1 cut(s) | 24 |
| BstC8I | GCNNGC | 2 cut(s) | 684, 731 |
| BstDEI | CTNAG | 3 cut(s) | 15, 668, 815 |
| BstKTI | GATC | 2 cut(s) | 334, 799 |
| BstMBI | GATC | 2 cut(s) | 331, 796 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 318 |
| BstNI | CCWGG | 1 cut(s) | 498 |
| BstNSI | RCATGY | 1 cut(s) | 757 |
| BstSCI | CCNGG | 1 cut(s) | 496 |
| BtsIMutI | CAGTG | 1 cut(s) | 391 |
| Cac8I | GCNNGC | 2 cut(s) | 684, 731 |
| Csp6I | GTAC | 3 cut(s) | 624, 751, 842 |
| CviAII | CATG | 4 cut(s) | 335, 440, 734, 754 |
| CviQI | GTAC | 3 cut(s) | 624, 751, 842 |
| DdeI | CTNAG | 3 cut(s) | 15, 668, 815 |
| DpnI | GATC | 2 cut(s) | 333, 798 |
| DpnII | GATC | 2 cut(s) | 331, 796 |
| Eam1104I | CTCTTC | 1 cut(s) | 24 |
| EarI | CTCTTC | 1 cut(s) | 24 |
| Ecl136II | GAGCTC | 1 cut(s) | 682 |
| Eco130I | CCWWGG | 1 cut(s) | 837 |
| Eco24I | GRGCYC | 1 cut(s) | 684 |
| Eco53kI | GAGCTC | 1 cut(s) | 682 |
| Eco57I | CTGAAG | 1 cut(s) | 585 |
| EcoICRI | GAGCTC | 1 cut(s) | 682 |
| EcoRI | GAATTC | 1 cut(s) | 832 |
| EcoRII | CCWGG | 1 cut(s) | 496 |
| EcoT14I | CCWWGG | 1 cut(s) | 837 |
| EcoT22I | ATGCAT | 1 cut(s) | 441 |
| EcoT38I | GRGCYC | 1 cut(s) | 684 |
| ErhI | CCWWGG | 1 cut(s) | 837 |
| FaeI | CATG | 4 cut(s) | 338, 443, 737, 757 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 78, 110 |
| FatI | CATG | 4 cut(s) | 334, 439, 733, 753 |
| FauI | CCCGC | 1 cut(s) | 850 |
| FblI | GTMKAC | 2 cut(s) | 175, 511 |
| FriOI | GRGCYC | 1 cut(s) | 684 |
| FspBI | CTAG | 2 cut(s) | 615, 854 |
| HapII | CCGG | 2 cut(s) | 224, 758 |
| Hin1II | CATG | 4 cut(s) | 338, 443, 737, 757 |
| HincII | GTYRAC | 1 cut(s) | 546 |
| HindII | GTYRAC | 1 cut(s) | 546 |
| HindIII | AAGCTT | 2 cut(s) | 256, 691 |
| HinfI | GANTC | 2 cut(s) | 448, 738 |
| HpaII | CCGG | 2 cut(s) | 224, 758 |
| HphI | GGTGA | 1 cut(s) | 840 |
| Hpy166II | GTNNAC | 4 cut(s) | 176, 398, 512, 546 |
| Hpy188I | TCNGA | 3 cut(s) | 478, 604, 818 |
| Hpy188III | TCNNGA | 5 cut(s) | 41, 95, 452, 558, 794 |
| Hpy8I | GTNNAC | 4 cut(s) | 176, 398, 512, 546 |
| HpyAV | CCTTC | 2 cut(s) | 221, 776 |
| HpyCH4III | ACNGT | 3 cut(s) | 125, 402, 415 |
| HpyCH4V | TGCA | 3 cut(s) | 371, 439, 589 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 318 |
| HpyF3I | CTNAG | 3 cut(s) | 15, 668, 815 |
| Hsp92II | CATG | 4 cut(s) | 338, 443, 737, 757 |
| Kzo9I | GATC | 2 cut(s) | 331, 796 |
| LmnI | GCTCC | 2 cut(s) | 164, 760 |
| LpnPI | CCDG | 9 cut(s) | 24, 237, 483, 510, 543, 672, 715, 771, 811 |
| LweI | GCATC | 1 cut(s) | 426 |
| MaeI | CTAG | 2 cut(s) | 615, 854 |
| MaeIII | GTNAC | 1 cut(s) | 337 |
| MalI | GATC | 2 cut(s) | 333, 798 |
| MboI | GATC | 2 cut(s) | 331, 796 |
| MboII | GAAGA | 5 cut(s) | 41, 98, 513, 578, 841 |
| MhlI | GDGCHC | 2 cut(s) | 684, 765 |
| MluCI | AATT | 8 cut(s) | 73, 98, 209, 234, 570, 650, 832, 865 |
| MnlI | CCTC | 5 cut(s) | 25, 28, 122, 172, 824 |
| Mph1103I | ATGCAT | 1 cut(s) | 441 |
| MseI | TTAA | 3 cut(s) | 212, 771, 868 |
| MspI | CCGG | 2 cut(s) | 224, 758 |
| MspR9I | CCNGG | 1 cut(s) | 498 |
| MvaI | CCWGG | 1 cut(s) | 498 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 318 |
| NdeII | GATC | 2 cut(s) | 331, 796 |
| NlaIII | CATG | 4 cut(s) | 338, 443, 737, 757 |
| NlaIV | GGNNCC | 3 cut(s) | 160, 404, 521 |
| NmuCI | GTSAC | 1 cut(s) | 337 |
| NsiI | ATGCAT | 1 cut(s) | 441 |
| NspI | RCATGY | 1 cut(s) | 757 |
| PfeI | GAWTC | 2 cut(s) | 448, 738 |
| PsiI | TTATAA | 3 cut(s) | 276, 410, 864 |
| Psp124BI | GAGCTC | 1 cut(s) | 684 |
| Psp6I | CCWGG | 1 cut(s) | 496 |
| PspGI | CCWGG | 1 cut(s) | 496 |
| PspN4I | GGNNCC | 3 cut(s) | 160, 404, 521 |
| RsaI | GTAC | 3 cut(s) | 625, 752, 843 |
| RsaNI | GTAC | 3 cut(s) | 624, 751, 842 |
| SacI | GAGCTC | 1 cut(s) | 684 |
| SaqAI | TTAA | 3 cut(s) | 212, 771, 868 |
| Sau3AI | GATC | 2 cut(s) | 331, 796 |
| ScrFI | CCNGG | 1 cut(s) | 498 |
| SduI | GDGCHC | 2 cut(s) | 684, 765 |
| SfaNI | GCATC | 1 cut(s) | 426 |
| SmlI | CTYRAG | 1 cut(s) | 41 |
| SmoI | CTYRAG | 1 cut(s) | 41 |
| Sse9I | AATT | 8 cut(s) | 73, 98, 209, 234, 570, 650, 832, 865 |
| SsiI | CCGC | 3 cut(s) | 517, 802, 857 |
| SspI | AATATT | 1 cut(s) | 348 |
| SspMI | CTAG | 2 cut(s) | 615, 854 |
| SstI | GAGCTC | 1 cut(s) | 684 |
| StyD4I | CCNGG | 1 cut(s) | 496 |
| StyI | CCWWGG | 1 cut(s) | 837 |
| TaaI | ACNGT | 3 cut(s) | 125, 402, 415 |
| TasI | AATT | 8 cut(s) | 73, 98, 209, 234, 570, 650, 832, 865 |
| TatI | WGTACW | 2 cut(s) | 623, 750 |
| TfiI | GAWTC | 2 cut(s) | 448, 738 |
| Tru1I | TTAA | 3 cut(s) | 212, 771, 868 |
| Tru9I | TTAA | 3 cut(s) | 212, 771, 868 |
| TscAI | CASTG | 1 cut(s) | 391 |
| TseFI | GTSAC | 1 cut(s) | 337 |
| Tsp45I | GTSAC | 1 cut(s) | 337 |
| TspDTI | ATGAA | 4 cut(s) | 38, 42, 369, 659 |
| TspGWI | ACGGA | 1 cut(s) | 383 |
| TspRI | CASTG | 1 cut(s) | 391 |
| XapI | RAATTY | 1 cut(s) | 832 |
| XceI | RCATGY | 1 cut(s) | 757 |
| XmiI | GTMKAC | 2 cut(s) | 175, 511 |
| XspI | CTAG | 2 cut(s) | 615, 854 |
| Zsp2I | ATGCAT | 1 cut(s) | 441 |