TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 27 - 190 | 3.1e-54 | TIR domain |
| TIR_2 | PF13676 | 29 - 143 | 8.1e-16 | TIR domain |
| NB-ARC | PF00931 | 208 - 374 | 2.8e-19 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 446 - 516 | 1.7e-17 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 635 - 738 | 2.4e-06 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 745 - 816 | 6e-06 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 6 cut(s) | 548, 638, 738, 929, 1013, 1469 |
| Acc36I | ACCTGC | 1 cut(s) | 1863 |
| AccB1I | GGYRCC | 1 cut(s) | 1461 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 805 |
| AccII | CGCG | 2 cut(s) | 624, 626 |
| AccIII | TCCGGA | 2 cut(s) | 381, 2371 |
| AciI | CCGC | 7 cut(s) | 512, 626, 1858, 2841, 3044, 3132, 3425 |
| AclI | AACGTT | 1 cut(s) | 2736 |
| AclWI | GGATC | 8 cut(s) | 251, 362, 890, 1435, 1448, 2316, 2822, 3467 |
| AcoI | YGGCCR | 2 cut(s) | 499, 2887 |
| AcsI | RAATTY | 8 cut(s) | 687, 1823, 1906, 2485, 2650, 2850, 3070, 3502 |
| AcuI | CTGAAG | 6 cut(s) | 82, 357, 501, 1413, 1686, 2519 |
| AcvI | CACGTG | 1 cut(s) | 1405 |
| AfeI | AGCGCT | 1 cut(s) | 431 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 805, 1807, 2243, 2985, 3446 |
| AflIII | ACRYGT | 2 cut(s) | 1402, 2543 |
| AhlI | ACTAGT | 2 cut(s) | 2597, 3032 |
| AjnI | CCWGG | 4 cut(s) | 1293, 2095, 2713, 3429 |
| AleI | CACNNNNGTG | 1 cut(s) | 1403 |
| Alw21I | GWGCWC | 4 cut(s) | 1104, 1902, 2630, 3354 |
| Alw26I | GTCTC | 6 cut(s) | 379, 877, 975, 1509, 2277, 3041 |
| Alw44I | GTGCAC | 1 cut(s) | 2626 |
| AlwI | GGATC | 8 cut(s) | 251, 362, 890, 1435, 1448, 2316, 2822, 3467 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1664, 1711 |
| Ama87I | CYCGRG | 2 cut(s) | 1901, 1979 |
| Aor13HI | TCCGGA | 2 cut(s) | 381, 2371 |
| Aor51HI | AGCGCT | 1 cut(s) | 431 |
| AoxI | GGCC | 6 cut(s) | 130, 156, 499, 2887, 3193, 3271 |
| ApaLI | GTGCAC | 1 cut(s) | 2626 |
| ApeKI | GCWGC | 2 cut(s) | 485, 2283 |
| ApoI | RAATTY | 8 cut(s) | 687, 1823, 1906, 2485, 2650, 2850, 3070, 3502 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1032 |
| AspLEI | GCGC | 3 cut(s) | 14, 432, 626 |
| AspS9I | GGNCC | 6 cut(s) | 130, 849, 1133, 2374, 3326, 3427 |
| AsuHPI | GGTGA | 6 cut(s) | 36, 116, 316, 1340, 1944, 2837 |
| AvaI | CYCGRG | 2 cut(s) | 1901, 1979 |
| AvaII | GGWCC | 5 cut(s) | 849, 1133, 2374, 3326, 3427 |
| AxyI | CCTNAGG | 1 cut(s) | 2304 |
| BaeGI | GKGCMC | 1 cut(s) | 2630 |
| BaeI | ACNNNNGTAYC | 8 cut(s) | 1881, 1914, 2217, 2250, 3202, 3235, 3426, 3459 |
| BalI | TGGCCA | 2 cut(s) | 501, 2889 |
| BamHI | GGATCC | 1 cut(s) | 1440 |
| BanI | GGYRCC | 1 cut(s) | 1461 |
| BanII | GRGCYC | 1 cut(s) | 1104 |
| BauI | CACGAG | 1 cut(s) | 1284 |
| BbrPI | CACGTG | 1 cut(s) | 1405 |
| BbsI | GAAGAC | 5 cut(s) | 114, 250, 907, 2522, 2540 |
| Bbv12I | GWGCWC | 4 cut(s) | 1104, 1902, 2630, 3354 |
| BbvI | GCAGC | 2 cut(s) | 472, 2270 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3134, 3168 |
| BciT130I | CCWGG | 4 cut(s) | 1295, 2097, 2715, 3431 |
| BciVI | GTATCC | 2 cut(s) | 1882, 3427 |
| BcoDI | GTCTC | 6 cut(s) | 379, 877, 975, 1509, 2277, 3041 |
| BcuI | ACTAGT | 2 cut(s) | 2597, 3032 |
| BfaI | CTAG | 6 cut(s) | 1325, 1649, 1841, 2345, 2598, 3033 |
| BfmI | CTRYAG | 4 cut(s) | 717, 876, 1683, 2241 |
| BfoI | RGCGCY | 1 cut(s) | 433 |
| BfuAI | ACCTGC | 1 cut(s) | 1863 |
| BfuI | GTATCC | 2 cut(s) | 1882, 3427 |
| BglII | AGATCT | 1 cut(s) | 2341 |
| BisI | GCNGC | 3 cut(s) | 486, 2284, 3133 |
| BlsI | GCNGC | 3 cut(s) | 487, 2285, 3134 |
| Bme1390I | CCNGG | 4 cut(s) | 1295, 2097, 2715, 3431 |
| Bme18I | GGWCC | 5 cut(s) | 849, 1133, 2374, 3326, 3427 |
| BmeT110I | CYCGRG | 2 cut(s) | 1901, 1979 |
| BmgT120I | GGNCC | 6 cut(s) | 130, 849, 1133, 2374, 3326, 3427 |
| BmiI | GGNNCC | 3 cut(s) | 850, 1442, 1463 |
| BmrFI | CCNGG | 4 cut(s) | 1295, 2097, 2715, 3431 |
| BmrI | ACTGGG | 2 cut(s) | 341, 1902 |
| BmsI | GCATC | 8 cut(s) | 397, 460, 655, 1488, 1591, 2425, 2634, 2658 |
| BmuI | ACTGGG | 2 cut(s) | 341, 1902 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2379 |
| BpiI | GAAGAC | 5 cut(s) | 114, 250, 907, 2522, 2540 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 457, 489, 459, 491 |
| BpmI | CTGGAG | 3 cut(s) | 723, 1767, 2825 |
| Bpu10I | CCTNAGC | 1 cut(s) | 967 |
| BpuEI | CTTGAG | 7 cut(s) | 112, 223, 314, 1118, 1172, 2069, 2895 |
| BsaAI | YACGTR | 1 cut(s) | 1405 |
| BsaBI | GATNNNNATC | 3 cut(s) | 366, 942, 2340 |
| BsaJI | CCNNGG | 4 cut(s) | 1558, 2095, 2983, 3420 |
| BsaWI | WCCGGW | 3 cut(s) | 281, 381, 2371 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1086, 1116 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 805, 1807, 2243, 2985, 3446 |
| Bse118I | RCCGGY | 1 cut(s) | 8 |
| Bse1I | ACTGG | 9 cut(s) | 222, 336, 397, 1200, 1624, 1750, 1897, 1950, 2391 |
| Bse21I | CCTNAGG | 1 cut(s) | 2304 |
| Bse3DI | GCAATG | 1 cut(s) | 2408 |
| Bse8I | GATNNNNATC | 3 cut(s) | 366, 942, 2340 |
| BseAI | TCCGGA | 2 cut(s) | 381, 2371 |
| BseBI | CCWGG | 4 cut(s) | 1295, 2097, 2715, 3431 |
| BseDI | CCNNGG | 4 cut(s) | 1558, 2095, 2983, 3420 |
| BseGI | GGATG | 5 cut(s) | 702, 1417, 1582, 2649, 2816 |
| BseJI | GATNNNNATC | 3 cut(s) | 366, 942, 2340 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 805, 1807, 2243, 2985, 3446 |
| BseMI | GCAATG | 1 cut(s) | 2408 |
| BseMII | CTCAG | 7 cut(s) | 179, 261, 546, 1703, 2392, 2513, 2627 |
| BseNI | ACTGG | 9 cut(s) | 222, 336, 397, 1200, 1624, 1750, 1897, 1950, 2391 |
| BseRI | GAGGAG | 4 cut(s) | 210, 311, 3329, 3332 |
| BseSI | GKGCMC | 1 cut(s) | 2630 |
| BseXI | GCAGC | 2 cut(s) | 472, 2270 |
| BseYI | CCCAGC | 1 cut(s) | 3094 |
| BsgI | GTGCAG | 3 cut(s) | 242, 1014, 2616 |
| Bsh1236I | CGCG | 2 cut(s) | 624, 626 |
| BshFI | GGCC | 6 cut(s) | 132, 158, 501, 2889, 3195, 3273 |
| BshNI | GGYRCC | 1 cut(s) | 1461 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1104, 1902, 2630, 3354 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1901, 1979 |
| BsiSI | CCGG | 5 cut(s) | 9, 159, 282, 382, 2372 |
| BslFI | GGGAC | 3 cut(s) | 862, 3111, 3323 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 805, 1807, 2243, 2985, 3446 |
| BsmAI | GTCTC | 6 cut(s) | 379, 877, 975, 1509, 2277, 3041 |
| BsmFI | GGGAC | 3 cut(s) | 862, 3111, 3323 |
| BsnI | GGCC | 6 cut(s) | 132, 158, 501, 2889, 3195, 3273 |
| BsoBI | CYCGRG | 2 cut(s) | 1901, 1979 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1104, 1902, 2630, 3354 |
| Bsp13I | TCCGGA | 2 cut(s) | 381, 2371 |
| Bsp1407I | TGTACA | 2 cut(s) | 1226, 2564 |
| BspACI | CCGC | 7 cut(s) | 512, 626, 1858, 2841, 3044, 3132, 3425 |
| BspANI | GGCC | 6 cut(s) | 132, 158, 501, 2889, 3195, 3273 |
| BspCNI | CTCAG | 7 cut(s) | 180, 260, 547, 1704, 2391, 2514, 2628 |
| BspEI | TCCGGA | 2 cut(s) | 381, 2371 |
| BspFNI | CGCG | 2 cut(s) | 624, 626 |
| BspLI | GGNNCC | 3 cut(s) | 850, 1442, 1463 |
| BspMAI | CTGCAG | 1 cut(s) | 880 |
| BspMI | ACCTGC | 1 cut(s) | 1863 |
| BspPI | GGATC | 8 cut(s) | 251, 362, 890, 1435, 1448, 2316, 2822, 3467 |
| BspQI | GCTCTTC | 1 cut(s) | 420 |
| BspT107I | GGYRCC | 1 cut(s) | 1461 |
| BsrDI | GCAATG | 1 cut(s) | 2408 |
| BsrFI | RCCGGY | 1 cut(s) | 8 |
| BsrGI | TGTACA | 2 cut(s) | 1226, 2564 |
| BsrI | ACTGG | 9 cut(s) | 222, 336, 397, 1200, 1624, 1750, 1897, 1950, 2391 |
| BssAI | RCCGGY | 1 cut(s) | 8 |
| BssECI | CCNNGG | 4 cut(s) | 1558, 2095, 2983, 3420 |
| BssSI | CACGAG | 1 cut(s) | 1284 |
| BssT1I | CCWWGG | 3 cut(s) | 1558, 2983, 3420 |
| Bst2BI | CACGAG | 1 cut(s) | 1284 |
| Bst2UI | CCWGG | 4 cut(s) | 1295, 2097, 2715, 3431 |
| Bst4CI | ACNGT | 8 cut(s) | 585, 721, 1258, 1461, 2003, 2271, 2885, 3480 |
| Bst6I | CTCTTC | 6 cut(s) | 187, 420, 2208, 2571, 3165, 3306 |
| BstAUI | TGTACA | 2 cut(s) | 1226, 2564 |
| BstBAI | YACGTR | 1 cut(s) | 1405 |
| BstC8I | GCNNGC | 7 cut(s) | 225, 1116, 1158, 1539, 1868, 3197, 3491 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3444 |
| BstF5I | GGATG | 5 cut(s) | 702, 1417, 1582, 2649, 2816 |
| BstFNI | CGCG | 2 cut(s) | 624, 626 |
| BstH2I | RGCGCY | 1 cut(s) | 433 |
| BstHHI | GCGC | 3 cut(s) | 14, 432, 626 |
| BstMAI | GTCTC | 6 cut(s) | 379, 877, 975, 1509, 2277, 3041 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 11, 129, 1498, 1789, 2517, 2969 |
| BstNI | CCWGG | 4 cut(s) | 1295, 2097, 2715, 3431 |
| BstNSI | RCATGY | 2 cut(s) | 1118, 2547 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2379 |
| BstSCI | CCNGG | 4 cut(s) | 1293, 2095, 2713, 3429 |
| BstSFI | CTRYAG | 4 cut(s) | 717, 876, 1683, 2241 |
| BstSLI | GKGCMC | 1 cut(s) | 2630 |
| BstUI | CGCG | 2 cut(s) | 624, 626 |
| BstV1I | GCAGC | 2 cut(s) | 472, 2270 |
| BstV2I | GAAGAC | 5 cut(s) | 114, 250, 907, 2522, 2540 |
| BstX2I | RGATCY | 4 cut(s) | 243, 1440, 2308, 2341 |
| BstYI | RGATCY | 4 cut(s) | 243, 1440, 2308, 2341 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2304 |
| BsuI | GTATCC | 2 cut(s) | 1882, 3427 |
| BsuRI | GGCC | 6 cut(s) | 132, 158, 501, 2889, 3195, 3273 |
| BtsCI | GGATG | 5 cut(s) | 702, 1417, 1582, 2649, 2816 |
| BtsI | GCAGTG | 1 cut(s) | 2628 |
| BtsIMutI | CAGTG | 6 cut(s) | 255, 329, 477, 1193, 2628, 2633 |
| BveI | ACCTGC | 1 cut(s) | 1863 |
| Cac8I | GCNNGC | 7 cut(s) | 225, 1116, 1158, 1539, 1868, 3197, 3491 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1664, 1711 |
| CfoI | GCGC | 3 cut(s) | 14, 432, 626 |
| Cfr10I | RCCGGY | 1 cut(s) | 8 |
| Cfr13I | GGNCC | 6 cut(s) | 130, 849, 1133, 2374, 3326, 3427 |
| CseI | GACGC | 2 cut(s) | 1882, 3188 |
| DraI | TTTAAA | 4 cut(s) | 415, 1696, 1920, 2484 |
| EaeI | YGGCCR | 2 cut(s) | 499, 2887 |
| Eam1104I | CTCTTC | 6 cut(s) | 187, 420, 2208, 2571, 3165, 3306 |
| EarI | CTCTTC | 6 cut(s) | 187, 420, 2208, 2571, 3165, 3306 |
| EciI | GGCGGA | 2 cut(s) | 2856, 3440 |
| Ecl136II | GAGCTC | 1 cut(s) | 1102 |
| Eco130I | CCWWGG | 3 cut(s) | 1558, 2983, 3420 |
| Eco147I | AGGCCT | 2 cut(s) | 3195, 3273 |
| Eco24I | GRGCYC | 1 cut(s) | 1104 |
| Eco32I | GATATC | 1 cut(s) | 838 |
| Eco47I | GGWCC | 5 cut(s) | 849, 1133, 2374, 3326, 3427 |
| Eco47III | AGCGCT | 1 cut(s) | 431 |
| Eco53kI | GAGCTC | 1 cut(s) | 1102 |
| Eco57I | CTGAAG | 6 cut(s) | 82, 357, 501, 1413, 1686, 2519 |
| Eco72I | CACGTG | 1 cut(s) | 1405 |
| Eco81I | CCTNAGG | 1 cut(s) | 2304 |
| Eco88I | CYCGRG | 2 cut(s) | 1901, 1979 |
| EcoICRI | GAGCTC | 1 cut(s) | 1102 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3444 |
| EcoRII | CCWGG | 4 cut(s) | 1293, 2095, 2713, 3429 |
| EcoRV | GATATC | 1 cut(s) | 838 |
| EcoT14I | CCWWGG | 3 cut(s) | 1558, 2983, 3420 |
| EcoT22I | ATGCAT | 2 cut(s) | 1120, 1503 |
| EcoT38I | GRGCYC | 1 cut(s) | 1104 |
| ErhI | CCWWGG | 3 cut(s) | 1558, 2983, 3420 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1080, 1112 |
| FaqI | GGGAC | 3 cut(s) | 862, 3111, 3323 |
| FauNDI | CATATG | 1 cut(s) | 3166 |
| Fnu4HI | GCNGC | 3 cut(s) | 486, 2284, 3133 |
| FokI | GGATG | 5 cut(s) | 709, 1424, 1569, 2656, 2823 |
| FriOI | GRGCYC | 1 cut(s) | 1104 |
| Fsp4HI | GCNGC | 3 cut(s) | 486, 2284, 3133 |
| FspBI | CTAG | 6 cut(s) | 1325, 1649, 1841, 2345, 2598, 3033 |
| GlaI | GCGC | 3 cut(s) | 13, 431, 625 |
| GluI | GCNGC | 3 cut(s) | 486, 2284, 3133 |
| GsaI | CCCAGC | 1 cut(s) | 3098 |
| GsuI | CTGGAG | 3 cut(s) | 723, 1767, 2825 |
| HaeII | RGCGCY | 1 cut(s) | 433 |
| HaeIII | GGCC | 6 cut(s) | 132, 158, 501, 2889, 3195, 3273 |
| HapII | CCGG | 5 cut(s) | 9, 159, 282, 382, 2372 |
| HgaI | GACGC | 2 cut(s) | 1882, 3188 |
| HhaI | GCGC | 3 cut(s) | 14, 432, 626 |
| Hin6I | GCGC | 3 cut(s) | 12, 430, 624 |
| HinP1I | GCGC | 3 cut(s) | 12, 430, 624 |
| HincII | GTYRAC | 1 cut(s) | 1608 |
| HindII | GTYRAC | 1 cut(s) | 1608 |
| HpaII | CCGG | 5 cut(s) | 9, 159, 282, 382, 2372 |
| HphI | GGTGA | 6 cut(s) | 36, 116, 316, 1340, 1944, 2837 |
| Hpy166II | GTNNAC | 6 cut(s) | 1608, 2023, 2062, 2591, 2603, 2628 |
| Hpy8I | GTNNAC | 6 cut(s) | 1608, 2023, 2062, 2591, 2603, 2628 |
| HpyCH4III | ACNGT | 8 cut(s) | 585, 721, 1258, 1461, 2003, 2271, 2885, 3480 |
| HpyCH4IV | ACGT | 5 cut(s) | 70, 1404, 1567, 1878, 2736 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 11, 129, 1498, 1789, 2517, 2969 |
| HpySE526I | ACGT | 5 cut(s) | 70, 1404, 1567, 1878, 2736 |
| HspAI | GCGC | 3 cut(s) | 12, 430, 624 |
| Kpn2I | TCCGGA | 2 cut(s) | 381, 2371 |
| LguI | GCTCTTC | 1 cut(s) | 420 |
| LmnI | GCTCC | 2 cut(s) | 1107, 1725 |
| Lsp1109I | GCAGC | 2 cut(s) | 472, 2270 |
| LweI | GCATC | 8 cut(s) | 397, 460, 655, 1488, 1591, 2425, 2634, 2658 |
| MaeI | CTAG | 6 cut(s) | 1325, 1649, 1841, 2345, 2598, 3033 |
| MaeII | ACGT | 5 cut(s) | 70, 1404, 1567, 1878, 2736 |
| MaeIII | GTNAC | 4 cut(s) | 1396, 2246, 2472, 2825 |
| MfeI | CAATTG | 2 cut(s) | 228, 2439 |
| MflI | RGATCY | 4 cut(s) | 243, 1440, 2308, 2341 |
| MhlI | GDGCHC | 4 cut(s) | 1104, 1902, 2630, 3354 |
| MlsI | TGGCCA | 2 cut(s) | 501, 2889 |
| MluNI | TGGCCA | 2 cut(s) | 501, 2889 |
| MlyI | GAGTC | 5 cut(s) | 977, 1455, 1655, 2326, 2470 |
| MmeI | TCCRAC | 4 cut(s) | 53, 589, 664, 1747 |
| Mox20I | TGGCCA | 2 cut(s) | 501, 2889 |
| Mph1103I | ATGCAT | 2 cut(s) | 1120, 1503 |
| MroI | TCCGGA | 2 cut(s) | 381, 2371 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1032 |
| MscI | TGGCCA | 2 cut(s) | 501, 2889 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1403, 1587 |
| Msp20I | TGGCCA | 2 cut(s) | 501, 2889 |
| MspA1I | CMGCKG | 1 cut(s) | 187 |
| MspI | CCGG | 5 cut(s) | 9, 159, 282, 382, 2372 |
| MspR9I | CCNGG | 4 cut(s) | 1295, 2097, 2715, 3431 |
| MunI | CAATTG | 2 cut(s) | 228, 2439 |
| MvaI | CCWGG | 4 cut(s) | 1295, 2097, 2715, 3431 |
| MvnI | CGCG | 2 cut(s) | 624, 626 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 11, 129, 1498, 1789, 2517, 2969 |
| NdeI | CATATG | 1 cut(s) | 3166 |
| NlaIV | GGNNCC | 3 cut(s) | 850, 1442, 1463 |
| NmuCI | GTSAC | 2 cut(s) | 1396, 2825 |
| NsiI | ATGCAT | 2 cut(s) | 1120, 1503 |
| NspI | RCATGY | 2 cut(s) | 1118, 2547 |
| OliI | CACNNNNGTG | 1 cut(s) | 1403 |
| PaeI | GCATGC | 1 cut(s) | 1118 |
| PaeR7I | CTCGAG | 2 cut(s) | 1901, 1979 |
| PceI | AGGCCT | 2 cut(s) | 3195, 3273 |
| PciI | ACATGT | 1 cut(s) | 2543 |
| PciSI | GCTCTTC | 1 cut(s) | 420 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1032 |
| PflFI | GACNNNGTC | 1 cut(s) | 3140 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 805 |
| PfoI | TCCNGGA | 1 cut(s) | 1293 |
| PkrI | GCNGC | 3 cut(s) | 487, 2285, 3134 |
| PleI | GAGTC | 5 cut(s) | 977, 1454, 1655, 2325, 2469 |
| PmaCI | CACGTG | 1 cut(s) | 1405 |
| PmlI | CACGTG | 1 cut(s) | 1405 |
| PpsI | GAGTC | 5 cut(s) | 977, 1454, 1655, 2325, 2469 |
| Ppu21I | YACGTR | 1 cut(s) | 1405 |
| PscI | ACATGT | 1 cut(s) | 2543 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2379 |
| PsiI | TTATAA | 6 cut(s) | 548, 638, 738, 929, 1013, 1469 |
| Psp124BI | GAGCTC | 1 cut(s) | 1104 |
| Psp1406I | AACGTT | 1 cut(s) | 2736 |
| Psp6I | CCWGG | 4 cut(s) | 1293, 2095, 2713, 3429 |
| PspCI | CACGTG | 1 cut(s) | 1405 |
| PspFI | CCCAGC | 1 cut(s) | 3094 |
| PspGI | CCWGG | 4 cut(s) | 1293, 2095, 2713, 3429 |
| PspN4I | GGNNCC | 3 cut(s) | 850, 1442, 1463 |
| PspPI | GGNCC | 6 cut(s) | 130, 849, 1133, 2374, 3326, 3427 |
| PstI | CTGCAG | 1 cut(s) | 880 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1664, 1711 |
| PsuI | RGATCY | 4 cut(s) | 243, 1440, 2308, 2341 |
| PsyI | GACNNNGTC | 1 cut(s) | 3140 |
| PvuII | CAGCTG | 1 cut(s) | 187 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1403, 1587 |
| SacI | GAGCTC | 1 cut(s) | 1104 |
| SapI | GCTCTTC | 1 cut(s) | 420 |
| SatI | GCNGC | 3 cut(s) | 486, 2284, 3133 |
| Sau96I | GGNCC | 6 cut(s) | 130, 849, 1133, 2374, 3326, 3427 |
| SchI | GAGTC | 5 cut(s) | 977, 1455, 1655, 2326, 2470 |
| ScrFI | CCNGG | 4 cut(s) | 1295, 2097, 2715, 3431 |
| SduI | GDGCHC | 4 cut(s) | 1104, 1902, 2630, 3354 |
| SfaNI | GCATC | 8 cut(s) | 397, 460, 655, 1488, 1591, 2425, 2634, 2658 |
| SfcI | CTRYAG | 4 cut(s) | 717, 876, 1683, 2241 |
| Sfr274I | CTCGAG | 2 cut(s) | 1901, 1979 |
| SinI | GGWCC | 5 cut(s) | 849, 1133, 2374, 3326, 3427 |
| SlaI | CTCGAG | 2 cut(s) | 1901, 1979 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1403, 1587 |
| SmlI | CTYRAG | 9 cut(s) | 91, 238, 293, 1097, 1151, 1901, 1979, 2084, 2910 |
| SmoI | CTYRAG | 9 cut(s) | 91, 238, 293, 1097, 1151, 1901, 1979, 2084, 2910 |
| SpeI | ACTAGT | 2 cut(s) | 2597, 3032 |
| SphI | GCATGC | 1 cut(s) | 1118 |
| SseBI | AGGCCT | 2 cut(s) | 3195, 3273 |
| SsiI | CCGC | 7 cut(s) | 512, 626, 1858, 2841, 3044, 3132, 3425 |
| SspI | AATATT | 2 cut(s) | 652, 3283 |
| SspMI | CTAG | 6 cut(s) | 1325, 1649, 1841, 2345, 2598, 3033 |
| SstI | GAGCTC | 1 cut(s) | 1104 |
| StuI | AGGCCT | 2 cut(s) | 3195, 3273 |
| StyD4I | CCNGG | 4 cut(s) | 1293, 2095, 2713, 3429 |
| StyI | CCWWGG | 3 cut(s) | 1558, 2983, 3420 |
| TaaI | ACNGT | 8 cut(s) | 585, 721, 1258, 1461, 2003, 2271, 2885, 3480 |
| TaiI | ACGT | 5 cut(s) | 73, 1407, 1570, 1881, 2739 |
| TaqI | TCGA | 5 cut(s) | 1513, 1902, 1980, 3144, 3344 |
| TaqII | GACCGA | 3 cut(s) | 1798, 1916, 3343 |
| TatI | WGTACW | 5 cut(s) | 1226, 1253, 2564, 2868, 3404 |
| TauI | GCSGC | 1 cut(s) | 3135 |
| TscAI | CASTG | 6 cut(s) | 255, 336, 484, 1200, 2635, 2640 |
| TseFI | GTSAC | 2 cut(s) | 1396, 2825 |
| TseI | GCWGC | 2 cut(s) | 485, 2283 |
| Tsp45I | GTSAC | 2 cut(s) | 1396, 2825 |
| TspGWI | ACGGA | 1 cut(s) | 280 |
| TspRI | CASTG | 6 cut(s) | 255, 336, 484, 1200, 2635, 2640 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3140 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 805 |
| VneI | GTGCAC | 1 cut(s) | 2626 |
| VpaK11BI | GGWCC | 5 cut(s) | 849, 1133, 2374, 3326, 3427 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3444 |
| XapI | RAATTY | 8 cut(s) | 687, 1823, 1906, 2485, 2650, 2850, 3070, 3502 |
| XbaI | TCTAGA | 1 cut(s) | 1648 |
| XceI | RCATGY | 2 cut(s) | 1118, 2547 |
| XhoI | CTCGAG | 2 cut(s) | 1901, 1979 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1032 |
| XspI | CTAG | 6 cut(s) | 1325, 1649, 1841, 2345, 2598, 3033 |
| Zsp2I | ATGCAT | 2 cut(s) | 1120, 1503 |