TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 7 - 173 | 1.2e-50 | TIR domain |
| TIR_2 | PF13676 | 10 - 106 | 4e-15 | TIR domain |
| NB-ARC | PF00931 | 204 - 355 | 1.8e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 424 - 494 | 1.2e-14 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_RPS2 | PF23247 | 647 - 762 | 5.7e-07 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 944 |
| AasI | GACNNNNNNGTC | 3 cut(s) | 2831, 2909, 2987 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1333 |
| AccBSI | CCGCTC | 1 cut(s) | 435 |
| AccI | GTMKAC | 2 cut(s) | 873, 1785 |
| AccII | CGCG | 3 cut(s) | 169, 353, 2303 |
| AciI | CCGC | 8 cut(s) | 221, 351, 435, 537, 565, 639, 2102, 2462 |
| AclWI | GGATC | 4 cut(s) | 305, 607, 1406, 2965 |
| AcoI | YGGCCR | 1 cut(s) | 780 |
| AcsI | RAATTY | 5 cut(s) | 624, 961, 1233, 2083, 2789 |
| AcuI | CTGAAG | 4 cut(s) | 224, 300, 999, 3071 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1076, 1333, 1370, 2101, 2770 |
| AflII | CTTAAG | 1 cut(s) | 2024 |
| AflIII | ACRYGT | 2 cut(s) | 27, 1534 |
| AjiI | CACGTC | 1 cut(s) | 28 |
| AjnI | CCWGG | 6 cut(s) | 393, 684, 2329, 2763, 2928, 3006 |
| Alw21I | GWGCWC | 2 cut(s) | 1038, 2255 |
| Alw26I | GTCTC | 7 cut(s) | 877, 1096, 1443, 1677, 2851, 2929, 3007 |
| Alw44I | GTGCAC | 1 cut(s) | 2251 |
| AlwI | GGATC | 4 cut(s) | 305, 607, 1406, 2965 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 247, 1598 |
| Ama87I | CYCGRG | 2 cut(s) | 10, 1385 |
| AoxI | GGCC | 2 cut(s) | 780, 1743 |
| ApaLI | GTGCAC | 1 cut(s) | 2251 |
| ApeKI | GCWGC | 5 cut(s) | 15, 194, 419, 422, 2267 |
| ApoI | RAATTY | 5 cut(s) | 624, 961, 1233, 2083, 2789 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 556, 1063 |
| AspLEI | GCGC | 1 cut(s) | 2303 |
| AspS9I | GGNCC | 3 cut(s) | 73, 183, 923 |
| AsuC2I | CCSGG | 4 cut(s) | 11, 12, 927, 2403 |
| AsuHPI | GGTGA | 9 cut(s) | 1285, 1904, 1917, 1988, 2327, 2486, 2866, 2944, 3022 |
| AsuII | TTCGAA | 1 cut(s) | 1057 |
| AvaI | CYCGRG | 2 cut(s) | 10, 1385 |
| AvaII | GGWCC | 3 cut(s) | 73, 183, 923 |
| AxyI | CCTNAGG | 1 cut(s) | 2370 |
| BaeGI | GKGCMC | 1 cut(s) | 2255 |
| BanII | GRGCYC | 1 cut(s) | 1038 |
| BbsI | GAAGAC | 1 cut(s) | 230 |
| Bbv12I | GWGCWC | 2 cut(s) | 1038, 2255 |
| BbvI | GCAGC | 5 cut(s) | 27, 181, 409, 431, 2254 |
| BccI | CCATC | 7 cut(s) | 206, 225, 692, 1340, 1707, 2289, 2425 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1037, 1071 |
| BciT130I | CCWGG | 6 cut(s) | 395, 686, 2331, 2765, 2930, 3008 |
| BclI | TGATCA | 1 cut(s) | 1909 |
| BcnI | CCSGG | 4 cut(s) | 11, 12, 927, 2403 |
| BcoDI | GTCTC | 7 cut(s) | 877, 1096, 1443, 1677, 2851, 2929, 3007 |
| BfaI | CTAG | 5 cut(s) | 138, 644, 1218, 2201, 2532 |
| BfmI | CTRYAG | 9 cut(s) | 417, 423, 512, 1143, 1211, 1504, 1739, 2004, 2288 |
| BfrI | CTTAAG | 1 cut(s) | 2024 |
| BisI | GCNGC | 9 cut(s) | 16, 195, 420, 423, 436, 537, 565, 2268, 2462 |
| BlpI | GCTNAGC | 1 cut(s) | 1607 |
| BlsI | GCNGC | 9 cut(s) | 17, 196, 421, 424, 437, 538, 566, 2269, 2463 |
| Bme18I | GGWCC | 3 cut(s) | 73, 183, 923 |
| BmeT110I | CYCGRG | 2 cut(s) | 10, 1385 |
| BmgBI | CACGTC | 1 cut(s) | 28 |
| BmgT120I | GGNCC | 3 cut(s) | 73, 183, 923 |
| BmiI | GGNNCC | 1 cut(s) | 184 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3052 |
| BpiI | GAAGAC | 1 cut(s) | 230 |
| BpmI | CTGGAG | 2 cut(s) | 1701, 2786 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1607 |
| Bpu14I | TTCGAA | 1 cut(s) | 1057 |
| BpuEI | CTTGAG | 5 cut(s) | 55, 793, 1052, 1078, 2078 |
| BpuMI | CCSGG | 4 cut(s) | 11, 12, 927, 2403 |
| Bsa29I | ATCGAT | 1 cut(s) | 3034 |
| BsaAI | YACGTR | 2 cut(s) | 1472, 1537 |
| BsaBI | GATNNNNATC | 5 cut(s) | 309, 1761, 2733, 2913, 2991 |
| BsaJI | CCNNGG | 3 cut(s) | 10, 2329, 2401 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1076, 1333, 1370, 2101, 2770 |
| Bse1I | ACTGG | 5 cut(s) | 340, 545, 1684, 1867, 2814 |
| Bse21I | CCTNAGG | 1 cut(s) | 2370 |
| Bse3DI | GCAATG | 2 cut(s) | 2112, 2471 |
| Bse8I | GATNNNNATC | 5 cut(s) | 309, 1761, 2733, 2913, 2991 |
| BseBI | CCWGG | 6 cut(s) | 395, 686, 2331, 2765, 2930, 3008 |
| BseCI | ATCGAT | 1 cut(s) | 3034 |
| BseDI | CCNNGG | 3 cut(s) | 10, 2329, 2401 |
| BseJI | GATNNNNATC | 5 cut(s) | 309, 1761, 2733, 2913, 2991 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1076, 1333, 1370, 2101, 2770 |
| BseMI | GCAATG | 2 cut(s) | 2112, 2471 |
| BseMII | CTCAG | 6 cut(s) | 1637, 1781, 2568, 2729, 2859, 2937 |
| BseNI | ACTGG | 5 cut(s) | 340, 545, 1684, 1867, 2814 |
| BseRI | GAGGAG | 6 cut(s) | 509, 833, 1403, 2885, 2963, 3041 |
| BseSI | GKGCMC | 1 cut(s) | 2255 |
| BseXI | GCAGC | 5 cut(s) | 27, 181, 409, 431, 2254 |
| BseYI | CCCAGC | 2 cut(s) | 2638, 2675 |
| BsgI | GTGCAG | 3 cut(s) | 272, 286, 2765 |
| Bsh1236I | CGCG | 3 cut(s) | 169, 353, 2303 |
| BshFI | GGCC | 2 cut(s) | 782, 1745 |
| BshVI | ATCGAT | 1 cut(s) | 3034 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1038, 2255 |
| BsiHKCI | CYCGRG | 2 cut(s) | 10, 1385 |
| BsiSI | CCGG | 3 cut(s) | 11, 926, 2403 |
| BslFI | GGGAC | 3 cut(s) | 826, 2655, 2693 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1076, 1333, 1370, 2101, 2770 |
| BsmAI | GTCTC | 7 cut(s) | 877, 1096, 1443, 1677, 2851, 2929, 3007 |
| BsmFI | GGGAC | 3 cut(s) | 826, 2655, 2693 |
| BsmI | GAATGC | 1 cut(s) | 1625 |
| BsnI | GGCC | 2 cut(s) | 782, 1745 |
| BsoBI | CYCGRG | 2 cut(s) | 10, 1385 |
| Bsp119I | TTCGAA | 1 cut(s) | 1057 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1038, 2255 |
| Bsp1407I | TGTACA | 2 cut(s) | 86, 1160 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1607 |
| BspACI | CCGC | 8 cut(s) | 221, 351, 435, 537, 565, 639, 2102, 2462 |
| BspANI | GGCC | 2 cut(s) | 782, 1745 |
| BspCNI | CTCAG | 6 cut(s) | 1638, 1782, 2569, 2730, 2860, 2938 |
| BspDI | ATCGAT | 1 cut(s) | 3034 |
| BspFNI | CGCG | 3 cut(s) | 169, 353, 2303 |
| BspHI | TCATGA | 2 cut(s) | 1228, 1519 |
| BspLI | GGNNCC | 1 cut(s) | 184 |
| BspMAI | CTGCAG | 4 cut(s) | 421, 427, 516, 1743 |
| BspPI | GGATC | 4 cut(s) | 305, 607, 1406, 2965 |
| BspT104I | TTCGAA | 1 cut(s) | 1057 |
| BspTI | CTTAAG | 1 cut(s) | 2024 |
| BsrBI | CCGCTC | 1 cut(s) | 435 |
| BsrDI | GCAATG | 2 cut(s) | 2112, 2471 |
| BsrGI | TGTACA | 2 cut(s) | 86, 1160 |
| BsrI | ACTGG | 5 cut(s) | 340, 545, 1684, 1867, 2814 |
| BssECI | CCNNGG | 3 cut(s) | 10, 2329, 2401 |
| Bst2UI | CCWGG | 6 cut(s) | 395, 686, 2331, 2765, 2930, 3008 |
| Bst4CI | ACNGT | 7 cut(s) | 86, 802, 878, 1358, 1408, 2608, 3062 |
| Bst6I | CTCTTC | 1 cut(s) | 1698 |
| BstAFI | CTTAAG | 1 cut(s) | 2024 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 416 |
| BstAUI | TGTACA | 2 cut(s) | 86, 1160 |
| BstBAI | YACGTR | 2 cut(s) | 1472, 1537 |
| BstBI | TTCGAA | 1 cut(s) | 1057 |
| BstC8I | GCNNGC | 8 cut(s) | 171, 440, 641, 1050, 1743, 2207, 2305, 2701 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1074, 2768 |
| BstFNI | CGCG | 3 cut(s) | 169, 353, 2303 |
| BstHHI | GCGC | 1 cut(s) | 2303 |
| BstMAI | GTCTC | 7 cut(s) | 877, 1096, 1443, 1677, 2851, 2929, 3007 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 45, 416, 1139 |
| BstNI | CCWGG | 6 cut(s) | 395, 686, 2331, 2765, 2930, 3008 |
| BstNSI | RCATGY | 5 cut(s) | 708, 999, 1052, 2361, 2433 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3052 |
| BstSFI | CTRYAG | 9 cut(s) | 417, 423, 512, 1143, 1211, 1504, 1739, 2004, 2288 |
| BstSLI | GKGCMC | 1 cut(s) | 2255 |
| BstUI | CGCG | 3 cut(s) | 169, 353, 2303 |
| BstV1I | GCAGC | 5 cut(s) | 27, 181, 409, 431, 2254 |
| BstV2I | GAAGAC | 1 cut(s) | 230 |
| BstX2I | RGATCY | 1 cut(s) | 2957 |
| BstYI | RGATCY | 1 cut(s) | 2957 |
| Bsu15I | ATCGAT | 1 cut(s) | 3034 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2370 |
| BsuRI | GGCC | 2 cut(s) | 782, 1745 |
| BsuTUI | ATCGAT | 1 cut(s) | 3034 |
| BtgZI | GCGATG | 1 cut(s) | 1408 |
| BtrI | CACGTC | 1 cut(s) | 28 |
| BtsI | GCAGTG | 1 cut(s) | 2262 |
| BtsIMutI | CAGTG | 4 cut(s) | 883, 1677, 2262, 2821 |
| Cac8I | GCNNGC | 8 cut(s) | 171, 440, 641, 1050, 1743, 2207, 2305, 2701 |
| CaiI | CAGNNNCTG | 2 cut(s) | 247, 1598 |
| CciI | TCATGA | 2 cut(s) | 1228, 1519 |
| CfoI | GCGC | 1 cut(s) | 2303 |
| Cfr13I | GGNCC | 3 cut(s) | 73, 183, 923 |
| Cfr9I | CCCGGG | 1 cut(s) | 10 |
| ClaI | ATCGAT | 1 cut(s) | 3034 |
| CseI | GACGC | 2 cut(s) | 175, 1600 |
| CsiI | ACCWGGT | 2 cut(s) | 2928, 3006 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 2831, 2909, 2987 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 2831, 2909, 2987 |
| EaeI | YGGCCR | 1 cut(s) | 780 |
| Eam1104I | CTCTTC | 1 cut(s) | 1698 |
| EarI | CTCTTC | 1 cut(s) | 1698 |
| Ecl136II | GAGCTC | 1 cut(s) | 1036 |
| Eco24I | GRGCYC | 1 cut(s) | 1038 |
| Eco32I | GATATC | 1 cut(s) | 1082 |
| Eco47I | GGWCC | 3 cut(s) | 73, 183, 923 |
| Eco53kI | GAGCTC | 1 cut(s) | 1036 |
| Eco57I | CTGAAG | 4 cut(s) | 224, 300, 999, 3071 |
| Eco81I | CCTNAGG | 1 cut(s) | 2370 |
| Eco88I | CYCGRG | 2 cut(s) | 10, 1385 |
| EcoICRI | GAGCTC | 1 cut(s) | 1036 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1074, 2768 |
| EcoRII | CCWGG | 6 cut(s) | 393, 684, 2329, 2763, 2928, 3006 |
| EcoRV | GATATC | 1 cut(s) | 1082 |
| EcoT22I | ATGCAT | 4 cut(s) | 898, 997, 1192, 1437 |
| EcoT38I | GRGCYC | 1 cut(s) | 1038 |
| FaqI | GGGAC | 3 cut(s) | 826, 2655, 2693 |
| FauI | CCCGC | 1 cut(s) | 632 |
| FauNDI | CATATG | 1 cut(s) | 2241 |
| FbaI | TGATCA | 1 cut(s) | 1909 |
| FblI | GTMKAC | 2 cut(s) | 873, 1785 |
| Fnu4HI | GCNGC | 9 cut(s) | 16, 195, 420, 423, 436, 537, 565, 2268, 2462 |
| FriOI | GRGCYC | 1 cut(s) | 1038 |
| Fsp4HI | GCNGC | 9 cut(s) | 16, 195, 420, 423, 436, 537, 565, 2268, 2462 |
| FspBI | CTAG | 5 cut(s) | 138, 644, 1218, 2201, 2532 |
| GlaI | GCGC | 1 cut(s) | 2302 |
| GluI | GCNGC | 9 cut(s) | 16, 195, 420, 423, 436, 537, 565, 2268, 2462 |
| GsaI | CCCAGC | 2 cut(s) | 2642, 2679 |
| GsuI | CTGGAG | 2 cut(s) | 1701, 2786 |
| HaeIII | GGCC | 2 cut(s) | 782, 1745 |
| HapII | CCGG | 3 cut(s) | 11, 926, 2403 |
| HgaI | GACGC | 2 cut(s) | 175, 1600 |
| HhaI | GCGC | 1 cut(s) | 2303 |
| Hin6I | GCGC | 1 cut(s) | 2301 |
| HinP1I | GCGC | 1 cut(s) | 2301 |
| HincII | GTYRAC | 5 cut(s) | 281, 654, 1786, 2365, 2437 |
| HindII | GTYRAC | 5 cut(s) | 281, 654, 1786, 2365, 2437 |
| HindIII | AAGCTT | 3 cut(s) | 1490, 1604, 2701 |
| HpaII | CCGG | 3 cut(s) | 11, 926, 2403 |
| HphI | GGTGA | 9 cut(s) | 1285, 1904, 1917, 1988, 2327, 2486, 2866, 2944, 3022 |
| Hpy99I | CGWCG | 1 cut(s) | 29 |
| HpyAV | CCTTC | 8 cut(s) | 324, 803, 1070, 1270, 1412, 1565, 2226, 2240 |
| HpyCH4III | ACNGT | 7 cut(s) | 86, 802, 878, 1358, 1408, 2608, 3062 |
| HpyCH4IV | ACGT | 5 cut(s) | 27, 1471, 1536, 1773, 1824 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 45, 416, 1139 |
| HpySE526I | ACGT | 5 cut(s) | 27, 1471, 1536, 1773, 1824 |
| HspAI | GCGC | 1 cut(s) | 2301 |
| Ksp22I | TGATCA | 1 cut(s) | 1909 |
| LmnI | GCTCC | 5 cut(s) | 244, 1041, 1390, 2298, 2767 |
| Lsp1109I | GCAGC | 5 cut(s) | 27, 181, 409, 431, 2254 |
| MabI | ACCWGGT | 2 cut(s) | 2928, 3006 |
| MaeI | CTAG | 5 cut(s) | 138, 644, 1218, 2201, 2532 |
| MaeII | ACGT | 5 cut(s) | 27, 1471, 1536, 1773, 1824 |
| MaeIII | GTNAC | 3 cut(s) | 1352, 1402, 1869 |
| MbiI | CCGCTC | 1 cut(s) | 435 |
| MfeI | CAATTG | 2 cut(s) | 657, 2012 |
| MflI | RGATCY | 1 cut(s) | 2957 |
| MhlI | GDGCHC | 2 cut(s) | 1038, 2255 |
| MlyI | GAGTC | 7 cut(s) | 233, 908, 2488, 2516, 2853, 2931, 3009 |
| MmeI | TCCRAC | 2 cut(s) | 529, 574 |
| Mph1103I | ATGCAT | 4 cut(s) | 898, 997, 1192, 1437 |
| MroXI | GAANNNNTTC | 2 cut(s) | 556, 1063 |
| MslI | CAYNNNNRTG | 2 cut(s) | 791, 1524 |
| MspA1I | CMGCKG | 1 cut(s) | 422 |
| MspCI | CTTAAG | 1 cut(s) | 2024 |
| MspI | CCGG | 3 cut(s) | 11, 926, 2403 |
| MunI | CAATTG | 2 cut(s) | 657, 2012 |
| Mva1269I | GAATGC | 1 cut(s) | 1625 |
| MvaI | CCWGG | 6 cut(s) | 395, 686, 2331, 2765, 2930, 3008 |
| MvnI | CGCG | 3 cut(s) | 169, 353, 2303 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 45, 416, 1139 |
| NciI | CCSGG | 4 cut(s) | 11, 12, 927, 2403 |
| NdeI | CATATG | 1 cut(s) | 2241 |
| NlaIV | GGNNCC | 1 cut(s) | 184 |
| NmuCI | GTSAC | 2 cut(s) | 1352, 1869 |
| NsiI | ATGCAT | 4 cut(s) | 898, 997, 1192, 1437 |
| NspI | RCATGY | 5 cut(s) | 708, 999, 1052, 2361, 2433 |
| NspV | TTCGAA | 1 cut(s) | 1057 |
| PaeI | GCATGC | 1 cut(s) | 1052 |
| PaeR7I | CTCGAG | 1 cut(s) | 1385 |
| PagI | TCATGA | 2 cut(s) | 1228, 1519 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2147 |
| PctI | GAATGC | 1 cut(s) | 1625 |
| PdmI | GAANNNNTTC | 2 cut(s) | 556, 1063 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1333 |
| PfoI | TCCNGGA | 2 cut(s) | 393, 925 |
| PkrI | GCNGC | 9 cut(s) | 17, 196, 421, 424, 437, 538, 566, 2269, 2463 |
| PleI | GAGTC | 7 cut(s) | 232, 908, 2488, 2516, 2853, 2931, 3009 |
| PpsI | GAGTC | 7 cut(s) | 232, 908, 2488, 2516, 2853, 2931, 3009 |
| Ppu21I | YACGTR | 2 cut(s) | 1472, 1537 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3052 |
| PsiI | TTATAA | 1 cut(s) | 944 |
| Psp124BI | GAGCTC | 1 cut(s) | 1038 |
| Psp6I | CCWGG | 6 cut(s) | 393, 684, 2329, 2763, 2928, 3006 |
| PspFI | CCCAGC | 2 cut(s) | 2638, 2675 |
| PspGI | CCWGG | 6 cut(s) | 393, 684, 2329, 2763, 2928, 3006 |
| PspN4I | GGNNCC | 1 cut(s) | 184 |
| PspPI | GGNCC | 3 cut(s) | 73, 183, 923 |
| PspXI | VCTCGAGB | 1 cut(s) | 1385 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 14, 46 |
| PstI | CTGCAG | 4 cut(s) | 421, 427, 516, 1743 |
| PstNI | CAGNNNCTG | 2 cut(s) | 247, 1598 |
| PsuI | RGATCY | 1 cut(s) | 2957 |
| PvuII | CAGCTG | 1 cut(s) | 422 |
| RseI | CAYNNNNRTG | 2 cut(s) | 791, 1524 |
| SacI | GAGCTC | 1 cut(s) | 1038 |
| SalI | GTCGAC | 1 cut(s) | 1784 |
| SatI | GCNGC | 9 cut(s) | 16, 195, 420, 423, 436, 537, 565, 2268, 2462 |
| Sau96I | GGNCC | 3 cut(s) | 73, 183, 923 |
| SchI | GAGTC | 7 cut(s) | 233, 908, 2488, 2516, 2853, 2931, 3009 |
| SduI | GDGCHC | 2 cut(s) | 1038, 2255 |
| SexAI | ACCWGGT | 2 cut(s) | 2928, 3006 |
| SfcI | CTRYAG | 9 cut(s) | 417, 423, 512, 1143, 1211, 1504, 1739, 2004, 2288 |
| Sfr274I | CTCGAG | 1 cut(s) | 1385 |
| SfuI | TTCGAA | 1 cut(s) | 1057 |
| SinI | GGWCC | 3 cut(s) | 73, 183, 923 |
| SlaI | CTCGAG | 1 cut(s) | 1385 |
| SmaI | CCCGGG | 1 cut(s) | 12 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 791, 1524 |
| SmlI | CTYRAG | 7 cut(s) | 34, 772, 1031, 1093, 1385, 2024, 2057 |
| SmoI | CTYRAG | 7 cut(s) | 34, 772, 1031, 1093, 1385, 2024, 2057 |
| SphI | GCATGC | 1 cut(s) | 1052 |
| SsiI | CCGC | 8 cut(s) | 221, 351, 435, 537, 565, 639, 2102, 2462 |
| SspI | AATATT | 3 cut(s) | 1341, 1951, 2632 |
| SspMI | CTAG | 5 cut(s) | 138, 644, 1218, 2201, 2532 |
| SstI | GAGCTC | 1 cut(s) | 1038 |
| TaaI | ACNGT | 7 cut(s) | 86, 802, 878, 1358, 1408, 2608, 3062 |
| TaiI | ACGT | 5 cut(s) | 30, 1474, 1539, 1776, 1827 |
| TatI | WGTACW | 6 cut(s) | 86, 797, 1160, 1616, 2008, 2720 |
| TauI | GCSGC | 4 cut(s) | 438, 539, 567, 2464 |
| TscAI | CASTG | 4 cut(s) | 883, 1684, 2269, 2821 |
| TseFI | GTSAC | 2 cut(s) | 1352, 1869 |
| TseI | GCWGC | 5 cut(s) | 15, 194, 419, 422, 2267 |
| Tsp45I | GTSAC | 2 cut(s) | 1352, 1869 |
| TspGWI | ACGGA | 3 cut(s) | 86, 395, 830 |
| TspMI | CCCGGG | 1 cut(s) | 10 |
| TspRI | CASTG | 4 cut(s) | 883, 1684, 2269, 2821 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1333 |
| Vha464I | CTTAAG | 1 cut(s) | 2024 |
| VneI | GTGCAC | 1 cut(s) | 2251 |
| VpaK11BI | GGWCC | 3 cut(s) | 73, 183, 923 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1074, 2768 |
| XapI | RAATTY | 5 cut(s) | 624, 961, 1233, 2083, 2789 |
| XceI | RCATGY | 5 cut(s) | 708, 999, 1052, 2361, 2433 |
| XhoI | CTCGAG | 1 cut(s) | 1385 |
| XmaI | CCCGGG | 1 cut(s) | 10 |
| XmiI | GTMKAC | 2 cut(s) | 873, 1785 |
| XmnI | GAANNNNTTC | 2 cut(s) | 556, 1063 |
| XspI | CTAG | 5 cut(s) | 138, 644, 1218, 2201, 2532 |
| Zsp2I | ATGCAT | 4 cut(s) | 898, 997, 1192, 1437 |