MD04G1011700.v1.1

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
1324708 .. 1331182
6475 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1011700.v1.1.491

Sequence Viewer

Length: 3183 bp
ATGACATCCCGTGAACCCTCCTCCTCAAAACTCTGGAGTTACGACGTGTTCTTGAGTTTTAGAGGTGAAGATACACGCAATGGCTTCACGAGCCACCTTCACGCGGCATTACAAGGCAGGGGCTTCGATGCCTTTATTGACGAGGACAATCTGAAAAGAGGGGGAGAAATAAAACCCGAACTGTTGCGGGCAATCGAAGGGTCCAGAATCTCGGTCATTGTCTTCTCAAAGAGTCACGCGGAATCAAGATGGTGTCTTGACGAGCTGGTGAAGATCATGGAATGTAGAGAAAGGCTAGGGCAACAGGTCTTGCCAATATTCTATCATGTCGATCCTTCACATGTGAGGAAGCAGGAAGGTTGTTTAGCCCGAGCATTTCAGAAGCACGAAGATGGCATCCTTGAAGAAAAAGATGACAAAGAACGTGAAGCTAAGAAAGAAAGGGTAAAGCAGTGGAGGGAGGCTCTTACTCAAGCTGCAAATTTGTCTGGCCACCATCTTAATAACGGGCCTGAAGCAAAGGTTATTAAGACAATTGTTGAGAAGAATATTCTGGAATTGCTTCCTGGCACGGATGAATTACAGGTGGCCAAGTACCCGGTTGGAATCGACTCTCGTGTTCAACCAATTATCAATGATATTTTTAGTGGTGGATTAAATGATGTTAAAATGGTTGGAATTTGGGGGATGGGTGGATTGGGCAAAACAACTGCTGCCAACGCCATTTATAACAAAATTCATCATTGCTTCCAGTTTAAATGTCACCTTGGAGATGTTAGTGACACTGAACATAGATATGGTTTGGTTTATTTGCAAAAACAACTTGTTTCTAACATGTTGAAACAAACCGCCATATTCCTGATAAATAGTGTCGGTGAAGGGATCAGTGTAATAAAACGACTTCTTCGACGTAGAAAAGTACTTATTGTTATTGATAATGTAGATAAAGTGGAGCAACTAAGCAATACCAAACCAGCCCTAAGTGCAATAGCTGGAGATCGTGAGTGGTTTGGTCCAGGAAGTATAATTATCATAACAACAAGAGATCAACATTTGCTAAATCAAGTGAGAGTGAATATGAGATATCCAGCCAAGGAAATGAATGAAGAGGAGGCTCTTGAGCTTTTCAGTTGGTATACATTTGAAAATAATTGCCCTAAAGAAGAATATTTTGAATTATCAAAGAAGGTAGTTTCTTACTGTGGAGGTTTGCCGTTAGCACTCAAAGTTTTAGGCTCCACTCTTTTTGGTAGACCCATAACAGAGTGGCAAAGCTATTTGGAGAAATTAAAAAGAATACCTGAAGGAGAAATTATAGAAAAGCTCAAAATAGGCTTTCATGGGTTAGATTATAATCAAAAAACTATATTCCTTGATATATCTTGTTGCTTTCTTGGTTTGGAGAAGGATCATGTCACAAAAATATTGGATGAATGTGGCTTCTATGCAACAAACGAAATCAGTGTTCTCAATGAACGGTGCCTTATAACTATTGAATGGGGCAAACTAAAGATGCATGATTTGATTCGAGAAATGGGCAAGACAATCATTTCTGAAAAATCTCCTACTCAACCTGGAAGATGGAGTAGACCGTGGAATTTTGAAGCCATAACAGACGTGTTGACAAATAAATCTGGAACTGAAGAAATTGAAGCACTTTCTCTACAGTTGCCAAGCTCTAAAACAAAGGCTAGTTTCAGTACAAAAGCATTTGTCAATATGAAAAAACTGAGATTGCTACGGCTCAACAATGTAGAGTTTACTGGAAGCTTCAAACATTTTCCGAAAGAGTTGAGATGGTTGGGCTGGCATGGATTCCCTTTCGAGTACATGCCGGAGCACCTTCTTAATCAGCCAAAACTTGTTGCTCTTGACCTGCGGTTCAGCAAACTCAGAAAAGGCTGGAAGAATTCCAAGCCGCTCGAAAATTTGAAAATCCTTGATCTTGCTTGTTCCTGGAAGTTAAAAAAGTCACCAGACTTTTCAATGCTCCCAAATCTCGGAGAATTGAATTTTTCAGGCTGTTCTAGTTTGTCCAAGATTCACCCATCCATCAGTCAACTTAAAAAACTCACTAGGGTAGATTTTCAATGGTGCCATAAGCTTAGGTATCTTCCAGCGGAATTCTATATGTTGAAATCTGTTGAGACTCTTTGTCTGTCGTTTTGTGCATTAAGAGAACTGCCTGAGGGCTTAGGGGAGATGGTATCATTGAGTAAAATTGATGCAAAATTTACAGCCATAAAACAATTCCCCAACGACCTTGGGCGTCTAATTTCTTTACAAGAGTTGATAGTTGGAGGCAATAGTTTTCGTAGCCTACCTAGCCTCAGTGGTCTTTCAAATCTCGTAATGTTGAGACTTGGGTATTGCAGAAATCTTCGTGCAATCCCCGATTTACCAACAAATTTGAAAGTCTTAGATGCAATTTTATGCCCTGCATTGGAAACAATGCCAGACTTTTCGCAAATGTCAAACATGGAACGACTGTTTCTAAGTCATTCGCCCAAAGTCACTGAGGTTCCAGGTTTAGGCTTGGGTAAATCATTAAACTCCATGGCGGAGCTTGATATGTACGGGTGCGCCAATCTCACAGCTGAGTTTAGGAACAACATCCTACAGGGATGGACTTCTTGCGGAGTTGGTGGTATTTTACTGAATAAGATTTATGGTATTCCGGAGTGGTTTGACTTTGTCACTGACGGCAATAAAGTCAGTTTTGATGTTCCTCAATGTCAAGGTCGTAATTTTAAAGGGTTGACACTCTGCTGGGTTTGGTCGCAATTCCAACATAAAAGTGTTGCCTTTACTGTTGTAAATTGTACCAAGCATACTACTTCGAGGGTCTCTAGGCTTTCTTGGGGAGTAACAGCGGGTTATTTTCGGCAGGTACAATTATCGAACAATAAGCTCAAGCTCAATTTGCAAGTCGGGGACAAGATTGTTATTCTTTTAGAGGGTTTTGAAGCGGAGAAATTAGGGGTAAATCTAGTATGGGACAAACCTTTGAAGGAAAACAAGAATCTTGGTGATTATTACTATGAATACGACTATGAAGCAGTTCCGGATTGGTTGTATGGTGAGTCAAGTCCGGGACCAAGCCATGGCGCATCTGATAATCATCCCACTAATCAAATGACGACTACTACAGATGAACCCAAACGGAAAAGGCAAAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1061

Amino Acids

120.46

Weight (kDa)

8.71

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 14 - 182 2.6e-51 TIR domain
TIR_2 PF13676 16 - 112 1.1e-14 TIR domain
NB-ARC PF00931 220 - 384 1.3e-16 NB-ARC domain
WHD_ROQ1 PF23282 452 - 521 1.2e-14 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36930 AT5G36930 AT5G36930 AT5G36930
fragaria_vesca FvH4_3g45361 FvH4_3g45380 FvH4_5g21061 FvH4_5g21062 FvH4_5g21063 FvH4_5g32050 FvH4_5g32970 FvH4_5g32990 FvH4_5g34190 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34211 FvH4_5g34240 FvH4_5g34250
malus_domestica MD00G1011700.v1.1 MD00G1026100.v1.1 MD00G1026500.v1.1 MD00G1027000.v1.1 MD00G1027100.v1.1 MD00G1027700.v1.1 MD00G1027800.v1.1 MD00G1028000.v1.1 MD00G1220000.v1.1 MD02G1024400.v1.1 MD02G1024800.v1.1 MD02G1026000.v1.1 MD02G1026100.v1.1 MD02G1031800.v1.1 MD02G1038500.v1.1 MD02G1038700.v1.1 MD02G1039200.v1.1 MD02G1040600.v1.1 MD02G1040900.v1.1 MD02G1041200.v1.1 MD02G1041300.v1.1 MD02G1041700.v1.1 MD02G1042000.v1.1 MD02G1043800.v1.1 MD02G1043900.v1.1 MD02G1044300.v1.1 MD02G1045200.v1.1 MD02G1045300.v1.1 MD02G1051200.v1.1 MD02G1052200.v1.1 MD02G1052800.v1.1 MD02G1053100.v1.1 MD02G1053600.v1.1 MD02G1055500.v1.1 MD02G1063300.v1.1 MD02G1063400.v1.1 MD02G1063800.v1.1 MD02G1306500.v1.1 MD02G1306600.v1.1 MD02G1306700.v1.1 MD02G1306900.v1.1 MD02G1307200.v1.1 MD04G1011700.v1.1 MD05G1315400.v1.1 MD05G1316000.v1.1 MD05G1316700.v1.1 MD05G1317000.v1.1 MD05G1317300.v1.1 MD05G1317600.v1.1 MD05G1317700.v1.1 MD07G1102800.v1.1 MD07G1238200.v1.1 MD08G1175900.v1.1 MD08G1203600.v1.1 MD09G1024200.v1.1 MD09G1039600.v1.1 MD09G1044800.v1.1 MD09G1045100.v1.1 MD10G1038700.v1.1 MD10G1039000.v1.1 MD10G1039200.v1.1 MD10G1040000.v1.1 MD10G1040200.v1.1 MD10G1040600.v1.1 MD10G1040800.v1.1 MD10G1297300.v1.1 MD12G1247500.v1.1 MD12G1247900.v1.1 MD12G1248300.v1.1 MD12G1248800.v1.1 MD15G1103700.v1.1 MD15G1103800.v1.1 MD15G1104000.v1.1 MD15G1179600.v1.1 MD15G1182500.v1.1 MD16G1068200.v1.1 MD16G1068300.v1.1 MD17G1024600.v1.1 MD17G1024700.v1.1 MD17G1025000.v1.1 MD17G1025900.v1.1
prunus_persica Prupe.1G539800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G557100_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557300_v2.0.a1
pyrus_communis pycom02g02080 pycom02g02090 pycom02g02110 pycom02g03220 pycom02g03260 pycom02g03370 pycom02g03390 pycom02g03410 pycom02g03420 pycom02g03450 pycom02g03500 pycom02g03730 pycom02g03770 pycom02g04400 pycom02g04410 pycom02g04430 pycom02g04450 pycom02g04460 pycom02g04490 pycom02g05200 pycom02g25710 pycom02g25750 pycom02g25790 pycom02g25810 pycom02g25830 pycom04g00920 pycom04g00930 pycom04g00940 pycom05g29300 pycom05g29310 pycom05g29380 pycom05g29410 pycom07g06310 pycom07g21420 pycom08g15070 pycom08g17540 pycom08g17560 pycom08g17570 pycom10g02670 pycom10g02680 pycom10g02700 pycom10g02770 pycom10g02790 pycom10g02800 pycom10g02810 pycom10g25020 pycom10g25030 pycom10g25050 pycom10g25080 pycom111g01990 pycom111g02000 pycom111g02030 pycom111g02040 pycom111g02050 pycom111g02060 pycom12g22710 pycom12g22720 pycom12g22730 pycom12g22740 pycom12g22750 pycom12g22770 pycom12g22780 pycom12g22790 pycom12g22800 pycom12g22810 pycom12g22830 pycom12g22840 pycom12g22860 pycom15g09440 pycom15g09480 pycom15g16120 pycom15g32380 pycom16g05970 pycom17g02100
rosa_chinensis RchiOBHm_Chr2g0144661 RchiOBHm_Chr4g0407491 RchiOBHm_Chr4g0407501 RchiOBHm_Chr4g0412381 RchiOBHm_Chr7g0208191 RchiOBHm_Chr7g0208201 RchiOBHm_Chr7g0208211 RchiOBHm_Chr7g0208221 RchiOBHm_Chr7g0228071 RchiOBHm_Chr7g0228121 RchiOBHm_Chr7g0230971 RchiOBHm_Chr7g0230981 RchiOBHm_Chr7g0233901 RchiOBHm_Chr7g0233951 RchiOBHm_Chr7g0233961 RchiOBHm_Chr7g0233991 RchiOBHm_Chr7g0234021 RchiOBHm_Chr7g0234151 RchiOBHm_Chr7g0234161 RchiOBHm_Chr7g0234241 RchiOBHm_Chr7g0234501 RchiOBHm_Chr7g0234641 RchiOBHm_Chr7g0234771 RchiOBHm_Chr7g0234781 RchiOBHm_Chr7g0234991 RchiOBHm_Chr7g0241291 RchiOBHm_Chr7g0241301
rosa_laevigata RLG00000001186 RLG00000001187 RLG00000001212 RLG00000001226 RLG00000001233 RLG00000001590 RLG00000003242 RLG00000003243 RLG00000003249 RLG00000008688 RLG00000008690
rosa_multiflora Rmu_co7966574.1_g000001 Rmu_co8120830.1_g000001 Rmu_co8142226.1_g000001 Rmu_co8293083.1_g000001 Rmu_co8351227.1_g000001 Rmu_co8380159.1_g000001 Rmu_co8456505.1_g000001 Rmu_sc0000676.1_g000025 Rmu_sc0000706.1_g000018 Rmu_sc0000706.1_g000040 Rmu_sc0000740.1_g000029 Rmu_sc0000740.1_g000032 Rmu_sc0000740.1_g000037 Rmu_sc0000740.1_g000040 Rmu_sc0000762.1_g000003 Rmu_sc0000762.1_g000019 Rmu_sc0000762.1_g000034 Rmu_sc0000762.1_g000069 Rmu_sc0000892.1_g000001 Rmu_sc0000945.1_g000040 Rmu_sc0001913.1_g000037 Rmu_sc0001913.1_g000041 Rmu_sc0001913.1_g000049 Rmu_sc0002775.1_g000017 Rmu_sc0002775.1_g000018 Rmu_sc0002775.1_g000020 Rmu_sc0002775.1_g000021 Rmu_sc0002775.1_g000022 Rmu_sc0002775.1_g000025 Rmu_sc0002775.1_g000026 Rmu_sc0002775.1_g000028 Rmu_sc0002775.1_g000030 Rmu_sc0004858.1_g000002 Rmu_sc0004864.1_g000022 Rmu_sc0005038.1_g000023 Rmu_sc0005840.1_g000014 Rmu_sc0006724.1_g000003 Rmu_sc0006824.1_g000005 Rmu_sc0007869.1_g000003 Rmu_sc0007869.1_g000005 Rmu_sc0007869.1_g000008 Rmu_sc0008646.1_g000007 Rmu_sc0009637.1_g000009 Rmu_sc0010500.1_g000002 Rmu_sc0010500.1_g000012 Rmu_sc0012403.1_g000025 Rmu_sc0013768.1_g000025 Rmu_sc0015625.1_g000001 Rmu_sc0019715.1_g000001 Rmu_sc0021133.1_g000002 Rmu_sc0021904.1_g000001 Rmu_sc0021904.1_g000003 Rmu_sc0021904.1_g000004 Rmu_sc0022054.1_g000001 Rmu_sc0026025.1_g000001 Rmu_sc0036828.1_g000002 Rmu_sc0041808.1_g000001 Rmu_ssc0000012.1_g000001
rosa_roxburghii Rroxscaffold_3G00226370 Rroxscaffold_3G00226860 Rroxscaffold_3G00226900 Rroxscaffold_3G00226930 Rroxscaffold_3G00226940 Rroxscaffold_3G00226970 Rroxscaffold_3G00226980 Rroxscaffold_3G00231530 Rroxscaffold_3G00237090 Rroxscaffold_3G00250760 Rroxscaffold_3G00250800
rosa_rugosa Rorug04G0082300 Rorug07G0101800 Rorug07G0102000 Rorug07G0102100 Rorug07G0221200 Rorug07G0245700 Rorug07G0245700 Rorug07G0245700 Rorug07G0263900 Rorug07G0264000 Rorug07G0264000 Rorug07G0264500 Rorug07G0282900 Rorug07G0282900 Rorug07G0283100 Rorug07G0283200.1 Rorug07G0283300 Rorug07G0283900 Rorug07G0284000 Rorug07G0284100 Rorug07G0284300 Rorug07G0284400 Rorug07G0284500 Rorug07G0285000 Rorug07G0285200 Rorug07G0285300 Rorug07G0285500 Rorug07G0286800 Rorug07G0286900 Rorug07G0287100 Rorug07G0287200
rosa_samantha Rh7AG236100 Rh7AG236200 Rh7AG236300 Rh7AG440000 Rh7AG440100 Rh7BG411900 Rh7BG412000 Rh7BG412600 Rh7CG251300 Rh7CG417700 Rh7CG460100 Rh7DG242100 Rh7DG242200 Rh7DG242300 Rh7DG429300
rosa_wichuraiana Rw0G005070 Rw0G010780 Rw0G012530 Rw7G020110 Rw7G020160 Rw7G020170 Rw7G033210 Rw7G033230 Rw7G033250 Rw7G034540 Rw7G035150 Rw7G036190 Rw7G036210 Rw7G036260 Rw7G036270 Rw7G036290 Rw7G036300 Rw7G036310 Rw7G036350 Rw7G036360 Rw7G036440 Rw7G036510 Rw7G036530 Rw7G036570 Rw7G036590 Rw7G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 729, 1353, 1487
Acc36I ACCTGC 2 cut(s) 1884, 2878
AccB1I GGYRCC 2 cut(s) 1479, 2094
AccB7I CCANNNNNTGG 1 cut(s) 3104
AccBSI CCGCTC 1 cut(s) 1921
AccI GTMKAC 3 cut(s) 1136, 1252, 1588
AccII CGCG 2 cut(s) 104, 239
AccIII TCCGGA 2 cut(s) 2677, 3064
AclWI GGATC 3 cut(s) 326, 890, 1416
AcoI YGGCCR 2 cut(s) 490, 588
AcuI CTGAAG 3 cut(s) 534, 1323, 1662
AcyI GRCGYC 1 cut(s) 2269
AfaI GTAC 7 cut(s) 596, 921, 1702, 1829, 2576, 2824, 2892
AfiI CCNNNNNNNGG 5 cut(s) 103, 2000, 2443, 2531, 3104
AflIII ACRYGT 4 cut(s) 45, 340, 834, 1617
AhdI GACNNNNNGTC 1 cut(s) 2154
AjiI CACGTC 2 cut(s) 46, 1618
AjnI CCWGG 5 cut(s) 565, 1015, 1573, 1955, 2524
Alw21I GWGCWC 1 cut(s) 1842
Alw26I GTCTC 3 cut(s) 2141, 2353, 2851
AlwI GGATC 3 cut(s) 326, 890, 1416
Ama87I CYCGRG 1 cut(s) 369
Aor13HI TCCGGA 2 cut(s) 2677, 3064
AoxI GGCC 3 cut(s) 490, 509, 588
ApeKI GCWGC 2 cut(s) 476, 713
Asp700I GAANNNNTTC 2 cut(s) 561, 3060
AspLEI GCGC 2 cut(s) 2585, 3110
AspS9I GGNCC 4 cut(s) 201, 509, 1013, 3095
AsuC2I CCSGG 2 cut(s) 599, 3093
AsuHPI GGTGA 8 cut(s) 77, 280, 755, 887, 1965, 2036, 3041, 3092
AvaI CYCGRG 1 cut(s) 369
AvaII GGWCC 3 cut(s) 201, 1013, 3095
AxyI CCTNAGG 1 cut(s) 2187
BalI TGGCCA 2 cut(s) 492, 590
BanI GGYRCC 2 cut(s) 1479, 2094
BauI CACGAG 2 cut(s) 88, 615
BbsI GAAGAC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 1842
BbvI GCAGC 2 cut(s) 463, 700
BceAI ACGGC 3 cut(s) 1198, 1757, 2719
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciT130I CCWGG 5 cut(s) 567, 1017, 1575, 1957, 2526
BcnI CCSGG 2 cut(s) 599, 3093
BcoDI GTCTC 3 cut(s) 2141, 2353, 2851
BfaI CTAG 7 cut(s) 296, 1692, 2028, 2076, 2325, 2850, 2990
BfmI CTRYAG 3 cut(s) 1664, 2618, 3147
BfuAI ACCTGC 2 cut(s) 1884, 2878
BisI GCNGC 4 cut(s) 105, 477, 714, 1919
BlsI GCNGC 4 cut(s) 106, 478, 715, 1920
BmcAI AGTACT 1 cut(s) 921
Bme1390I CCNGG 7 cut(s) 567, 599, 1017, 1575, 1957, 2526, 3093
Bme18I GGWCC 3 cut(s) 201, 1013, 3095
BmeRI GACNNNNNGTC 1 cut(s) 2154
BmeT110I CYCGRG 1 cut(s) 369
BmgBI CACGTC 2 cut(s) 46, 1618
BmgT120I GGNCC 4 cut(s) 201, 509, 1013, 3095
BmiI GGNNCC 6 cut(s) 202, 1237, 1481, 2096, 2523, 3096
BmrFI CCNGG 7 cut(s) 567, 599, 1017, 1575, 1957, 2526, 3093
BmsI GCATC 6 cut(s) 118, 405, 1503, 2215, 2413, 3119
BpiI GAAGAC 1 cut(s) 214
BplI GAGNNNNNCTC 2 cut(s) 448, 480
BpmI CTGGAG 2 cut(s) 55, 1014
Bpu10I CCTNAGC 2 cut(s) 2105, 2194
BpuEI CTTGAG 4 cut(s) 73, 456, 1139, 2897
BpuMI CCSGG 2 cut(s) 599, 3093
BsaBI GATNNNNATC 2 cut(s) 1353, 3120
BsaHI GRCGYC 1 cut(s) 2269
BsaI GGTCTC 1 cut(s) 2851
BsaJI CCNNGG 6 cut(s) 766, 1092, 1592, 2263, 2556, 3103
BsaWI WCCGGW 2 cut(s) 2677, 3064
Bsc4I CCNNNNNNNGG 5 cut(s) 103, 2000, 2443, 2531, 3104
Bse1I ACTGG 2 cut(s) 751, 1768
Bse21I CCTNAGG 1 cut(s) 2187
Bse3DI GCAATG 2 cut(s) 85, 742
Bse8I GATNNNNATC 2 cut(s) 1353, 3120
BseAI TCCGGA 2 cut(s) 2677, 3064
BseBI CCWGG 5 cut(s) 567, 1017, 1575, 1957, 2526
BseDI CCNNGG 6 cut(s) 766, 1092, 1592, 2263, 2556, 3103
BseGI GGATG 9 cut(s) 5, 396, 580, 693, 1435, 2048, 2613, 2630, 3121
BseJI GATNNNNATC 2 cut(s) 1353, 3120
BseLI CCNNNNNNNGG 5 cut(s) 103, 2000, 2443, 2531, 3104
BseMI GCAATG 2 cut(s) 85, 742
BseMII CTCAG 6 cut(s) 1721, 1906, 2178, 2344, 2508, 2589
BseNI ACTGG 2 cut(s) 751, 1768
BseRI GAGGAG 3 cut(s) 10, 13, 1124
BseXI GCAGC 2 cut(s) 463, 700
BseYI CCCAGC 1 cut(s) 2769
Bsh1236I CGCG 2 cut(s) 104, 239
BshFI GGCC 3 cut(s) 492, 511, 590
BshNI GGYRCC 2 cut(s) 1479, 2094
BsiHKAI GWGCWC 1 cut(s) 1842
BsiHKCI CYCGRG 1 cut(s) 369
BsiSI CCGG 5 cut(s) 599, 1835, 2678, 3065, 3092
BslFI GGGAC 3 cut(s) 2948, 3011, 3108
BslI CCNNNNNNNGG 5 cut(s) 103, 2000, 2443, 2531, 3104
BsmAI GTCTC 3 cut(s) 2141, 2353, 2851
BsmFI GGGAC 3 cut(s) 2948, 3011, 3108
BsnI GGCC 3 cut(s) 492, 511, 590
Bso31I GGTCTC 1 cut(s) 2851
BsoBI CYCGRG 1 cut(s) 369
Bsp1286I GDGCHC 1 cut(s) 1842
Bsp13I TCCGGA 2 cut(s) 2677, 3064
Bsp143I GATC 7 cut(s) 273, 331, 882, 997, 1045, 1408, 1942
Bsp19I CCATGG 2 cut(s) 2556, 3103
BspANI GGCC 3 cut(s) 492, 511, 590
BspCNI CTCAG 6 cut(s) 1722, 1905, 2179, 2343, 2509, 2590
BspEI TCCGGA 2 cut(s) 2677, 3064
BspFNI CGCG 2 cut(s) 104, 239
BspLI GGNNCC 6 cut(s) 202, 1237, 1481, 2096, 2523, 3096
BspMI ACCTGC 2 cut(s) 1884, 2878
BspPI GGATC 3 cut(s) 326, 890, 1416
BspT107I GGYRCC 2 cut(s) 1479, 2094
BspTNI GGTCTC 1 cut(s) 2851
BsrBI CCGCTC 1 cut(s) 1921
BsrDI GCAATG 2 cut(s) 85, 742
BsrI ACTGG 2 cut(s) 751, 1768
BssECI CCNNGG 6 cut(s) 766, 1092, 1592, 2263, 2556, 3103
BssMI GATC 7 cut(s) 273, 331, 882, 997, 1045, 1408, 1942
BssNAI GTATAC 1 cut(s) 1137
BssNI GRCGYC 1 cut(s) 2269
BssSI CACGAG 2 cut(s) 88, 615
BssT1I CCWWGG 5 cut(s) 766, 1092, 2263, 2556, 3103
Bst1107I GTATAC 1 cut(s) 1137
Bst2BI CACGAG 2 cut(s) 88, 615
Bst2UI CCWGG 5 cut(s) 567, 1017, 1575, 1957, 2526
Bst4CI ACNGT 7 cut(s) 183, 1202, 1479, 1593, 1668, 2490, 2812
Bst6I CTCTTC 1 cut(s) 1101
BstACI GRCGYC 1 cut(s) 2269
BstC8I GCNNGC 2 cut(s) 189, 1808
BstDSI CCRYGG 3 cut(s) 1592, 2556, 3103
BstF5I GGATG 9 cut(s) 5, 396, 580, 693, 1435, 2048, 2613, 2630, 3121
BstFNI CGCG 2 cut(s) 104, 239
BstHHI GCGC 2 cut(s) 2585, 3110
BstKTI GATC 7 cut(s) 276, 334, 885, 1000, 1048, 1411, 1945
BstMAI GTCTC 3 cut(s) 2141, 2353, 2851
BstMBI GATC 7 cut(s) 273, 331, 882, 997, 1045, 1408, 1942
BstMWI GCNNNNNNNGC 5 cut(s) 90, 719, 983, 2325, 2923
BstNI CCWGG 5 cut(s) 567, 1017, 1575, 1957, 2526
BstNSI RCATGY 3 cut(s) 344, 838, 1834
BstSCI CCNGG 7 cut(s) 565, 597, 1015, 1573, 1955, 2524, 3091
BstSFI CTRYAG 3 cut(s) 1664, 2618, 3147
BstUI CGCG 2 cut(s) 104, 239
BstV1I GCAGC 2 cut(s) 463, 700
BstV2I GAAGAC 1 cut(s) 214
BstZ17I GTATAC 1 cut(s) 1137
Bsu36I CCTNAGG 1 cut(s) 2187
BsuRI GGCC 3 cut(s) 492, 511, 590
BtgI CCRYGG 3 cut(s) 1592, 2556, 3103
BtrI CACGTC 2 cut(s) 46, 1618
BtsCI GGATG 9 cut(s) 5, 396, 580, 693, 1435, 2048, 2613, 2630, 3121
BtsI GCAGTG 1 cut(s) 458
BtsIMutI CAGTG 7 cut(s) 458, 783, 892, 1468, 2338, 2514, 2697
BveI ACCTGC 2 cut(s) 1884, 2878
Cac8I GCNNGC 2 cut(s) 189, 1808
CfoI GCGC 2 cut(s) 2585, 3110
Cfr13I GGNCC 4 cut(s) 201, 509, 1013, 3095
CseI GACGC 1 cut(s) 2258
Csp6I GTAC 7 cut(s) 595, 920, 1701, 1828, 2575, 2823, 2891
CspCI CAANNNNNGTGG 2 cut(s) 1228, 1263
CviQI GTAC 7 cut(s) 595, 920, 1701, 1828, 2575, 2823, 2891
DpnI GATC 7 cut(s) 275, 333, 884, 999, 1047, 1410, 1944
DpnII GATC 7 cut(s) 273, 331, 882, 997, 1045, 1408, 1942
DraI TTTAAA 2 cut(s) 757, 2752
DriI GACNNNNNGTC 1 cut(s) 2154
EaeI YGGCCR 2 cut(s) 490, 588
Eam1104I CTCTTC 1 cut(s) 1101
Eam1105I GACNNNNNGTC 1 cut(s) 2154
EarI CTCTTC 1 cut(s) 1101
EciI GGCGGA 1 cut(s) 2576
Eco130I CCWWGG 5 cut(s) 766, 1092, 2263, 2556, 3103
Eco31I GGTCTC 1 cut(s) 2851
Eco32I GATATC 1 cut(s) 1085
Eco47I GGWCC 3 cut(s) 201, 1013, 3095
Eco57I CTGAAG 3 cut(s) 534, 1323, 1662
Eco81I CCTNAGG 1 cut(s) 2187
Eco88I CYCGRG 1 cut(s) 369
EcoRI GAATTC 2 cut(s) 1909, 2123
EcoRII CCWGG 5 cut(s) 565, 1015, 1573, 1955, 2524
EcoRV GATATC 1 cut(s) 1085
EcoT14I CCWWGG 5 cut(s) 766, 1092, 2263, 2556, 3103
EcoT22I ATGCAT 1 cut(s) 1518
ErhI CCWWGG 5 cut(s) 766, 1092, 2263, 2556, 3103
FaqI GGGAC 3 cut(s) 2948, 3011, 3108
FauI CCCGC 2 cut(s) 180, 2866
FblI GTMKAC 3 cut(s) 1136, 1252, 1588
Fnu4HI GCNGC 4 cut(s) 105, 477, 714, 1919
FokI GGATG 8 cut(s) 383, 587, 700, 1442, 2035, 2600, 2637, 3108
Fsp4HI GCNGC 4 cut(s) 105, 477, 714, 1919
FspBI CTAG 7 cut(s) 296, 1692, 2028, 2076, 2325, 2850, 2990
GlaI GCGC 2 cut(s) 2584, 3109
GluI GCNGC 4 cut(s) 105, 477, 714, 1919
GsaI CCCAGC 1 cut(s) 2773
GsuI CTGGAG 2 cut(s) 55, 1014
HaeIII GGCC 3 cut(s) 492, 511, 590
HapII CCGG 5 cut(s) 599, 1835, 2678, 3065, 3092
HgaI GACGC 1 cut(s) 2258
HhaI GCGC 2 cut(s) 2585, 3110
Hin1I GRCGYC 1 cut(s) 2269
Hin6I GCGC 2 cut(s) 2583, 3108
HinP1I GCGC 2 cut(s) 2583, 3108
HincII GTYRAC 3 cut(s) 1623, 2060, 2760
HindII GTYRAC 3 cut(s) 1623, 2060, 2760
HindIII AAGCTT 2 cut(s) 1768, 2102
HpaII CCGG 5 cut(s) 599, 1835, 2678, 3065, 3092
HphI GGTGA 8 cut(s) 77, 280, 755, 887, 1965, 2036, 3041, 3092
Hpy166II GTNNAC 8 cut(s) 14, 1137, 1253, 1589, 1623, 1761, 2060, 2760
Hpy188I TCNGA 7 cut(s) 153, 381, 1555, 1785, 1895, 2003, 3115
Hpy8I GTNNAC 8 cut(s) 14, 1137, 1253, 1589, 1623, 1761, 2060, 2760
Hpy99I CGWCG 2 cut(s) 47, 912
HpyCH4III ACNGT 7 cut(s) 183, 1202, 1479, 1593, 1668, 2490, 2812
HpyCH4IV ACGT 4 cut(s) 45, 424, 910, 1617
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 719, 983, 2325, 2923
HpySE526I ACGT 4 cut(s) 45, 424, 910, 1617
Hsp92I GRCGYC 1 cut(s) 2269
HspAI GCGC 2 cut(s) 2583, 3108
Kpn2I TCCGGA 2 cut(s) 2677, 3064
Kzo9I GATC 7 cut(s) 273, 331, 882, 997, 1045, 1408, 1942
LmnI GCTCC 5 cut(s) 952, 1241, 1837, 1995, 2563
Lsp1109I GCAGC 2 cut(s) 463, 700
LweI GCATC 6 cut(s) 118, 405, 1503, 2215, 2413, 3119
MaeI CTAG 7 cut(s) 296, 1692, 2028, 2076, 2325, 2850, 2990
MaeII ACGT 4 cut(s) 45, 424, 910, 1617
MaeIII GTNAC 9 cut(s) 38, 233, 761, 779, 1414, 1971, 2512, 2695, 2866
MalI GATC 7 cut(s) 275, 333, 884, 999, 1047, 1410, 1944
MbiI CCGCTC 1 cut(s) 1921
MboI GATC 7 cut(s) 273, 331, 882, 997, 1045, 1408, 1942
MfeI CAATTG 1 cut(s) 534
MhlI GDGCHC 1 cut(s) 1842
MlsI TGGCCA 2 cut(s) 492, 590
MluNI TGGCCA 2 cut(s) 492, 590
MlyI GAGTC 4 cut(s) 241, 605, 2143, 3092
MmeI TCCRAC 4 cut(s) 583, 655, 2278, 2812
Mox20I TGGCCA 2 cut(s) 492, 590
Mph1103I ATGCAT 1 cut(s) 1518
MroI TCCGGA 2 cut(s) 2677, 3064
MroXI GAANNNNTTC 2 cut(s) 561, 3060
MscI TGGCCA 2 cut(s) 492, 590
MslI CAYNNNNRTG 3 cut(s) 390, 795, 2796
Msp20I TGGCCA 2 cut(s) 492, 590
MspA1I CMGCKG 3 cut(s) 2120, 2597, 2873
MspI CCGG 5 cut(s) 599, 1835, 2678, 3065, 3092
MspR9I CCNGG 7 cut(s) 567, 599, 1017, 1575, 1957, 2526, 3093
MunI CAATTG 1 cut(s) 534
MvaI CCWGG 5 cut(s) 567, 1017, 1575, 1957, 2526
MvnI CGCG 2 cut(s) 104, 239
MwoI GCNNNNNNNGC 5 cut(s) 90, 719, 983, 2325, 2923
NciI CCSGG 2 cut(s) 599, 3093
NcoI CCATGG 2 cut(s) 2556, 3103
NdeII GATC 7 cut(s) 273, 331, 882, 997, 1045, 1408, 1942
NlaIV GGNNCC 6 cut(s) 202, 1237, 1481, 2096, 2523, 3096
NmuCI GTSAC 7 cut(s) 233, 761, 779, 1414, 1971, 2512, 2695
NsiI ATGCAT 1 cut(s) 1518
NspI RCATGY 3 cut(s) 344, 838, 1834
PciI ACATGT 2 cut(s) 340, 834
PcsI WCGNNNNNNNCGW 1 cut(s) 904
PdmI GAANNNNTTC 2 cut(s) 561, 3060
PfeI GAWTC 7 cut(s) 207, 242, 606, 1525, 1815, 2041, 3022
PflFI GACNNNGTC 1 cut(s) 2693
PflMI CCANNNNNTGG 1 cut(s) 3104
PfoI TCCNGGA 3 cut(s) 1015, 1955, 3091
PkrI GCNGC 4 cut(s) 106, 478, 715, 1920
PleI GAGTC 4 cut(s) 240, 605, 2143, 3091
PpsI GAGTC 4 cut(s) 240, 605, 2143, 3091
PscI ACATGT 2 cut(s) 340, 834
PsiI TTATAA 3 cut(s) 729, 1353, 1487
Psp6I CCWGG 5 cut(s) 565, 1015, 1573, 1955, 2524
PspFI CCCAGC 1 cut(s) 2769
PspGI CCWGG 5 cut(s) 565, 1015, 1573, 1955, 2524
PspN4I GGNNCC 6 cut(s) 202, 1237, 1481, 2096, 2523, 3096
PspPI GGNCC 4 cut(s) 201, 509, 1013, 3095
PsyI GACNNNGTC 1 cut(s) 2693
PvuII CAGCTG 1 cut(s) 2597
RsaI GTAC 7 cut(s) 596, 921, 1702, 1829, 2576, 2824, 2892
RsaNI GTAC 7 cut(s) 595, 920, 1701, 1828, 2575, 2823, 2891
RseI CAYNNNNRTG 3 cut(s) 390, 795, 2796
SatI GCNGC 4 cut(s) 105, 477, 714, 1919
Sau3AI GATC 7 cut(s) 273, 331, 882, 997, 1045, 1408, 1942
Sau96I GGNCC 4 cut(s) 201, 509, 1013, 3095
ScaI AGTACT 1 cut(s) 921
SchI GAGTC 4 cut(s) 241, 605, 2143, 3092
ScrFI CCNGG 7 cut(s) 567, 599, 1017, 1575, 1957, 2526, 3093
SduI GDGCHC 1 cut(s) 1842
SfaNI GCATC 6 cut(s) 118, 405, 1503, 2215, 2413, 3119
SfcI CTRYAG 3 cut(s) 1664, 2618, 3147
SinI GGWCC 3 cut(s) 201, 1013, 3095
SmiMI CAYNNNNRTG 3 cut(s) 390, 795, 2796
SmlI CTYRAG 4 cut(s) 52, 471, 1118, 2912
SmoI CTYRAG 4 cut(s) 52, 471, 1118, 2912
SspI AATATT 4 cut(s) 318, 550, 1169, 1425
SspMI CTAG 7 cut(s) 296, 1692, 2028, 2076, 2325, 2850, 2990
StyD4I CCNGG 7 cut(s) 565, 597, 1015, 1573, 1955, 2524, 3091
StyI CCWWGG 5 cut(s) 766, 1092, 2263, 2556, 3103
TaaI ACNGT 7 cut(s) 183, 1202, 1479, 1593, 1668, 2490, 2812
TaiI ACGT 4 cut(s) 48, 427, 913, 1620
TaqII GACCGA 1 cut(s) 202
TatI WGTACW 3 cut(s) 919, 1700, 1827
TauI GCSGC 2 cut(s) 107, 1921
TfiI GAWTC 7 cut(s) 207, 242, 606, 1525, 1815, 2041, 3022
TscAI CASTG 7 cut(s) 458, 790, 892, 1468, 2338, 2521, 2704
TseFI GTSAC 7 cut(s) 233, 761, 779, 1414, 1971, 2512, 2695
TseI GCWGC 2 cut(s) 476, 713
Tsp45I GTSAC 7 cut(s) 233, 761, 779, 1414, 1971, 2512, 2695
TspGWI ACGGA 2 cut(s) 587, 3178
TspRI CASTG 7 cut(s) 458, 790, 892, 1468, 2338, 2521, 2704
Tth111I GACNNNGTC 1 cut(s) 2693
Van91I CCANNNNNTGG 1 cut(s) 3104
VpaK11BI GGWCC 3 cut(s) 201, 1013, 3095
XceI RCATGY 3 cut(s) 344, 838, 1834
XmiI GTMKAC 3 cut(s) 1136, 1252, 1588
XmnI GAANNNNTTC 2 cut(s) 561, 3060
XspI CTAG 7 cut(s) 296, 1692, 2028, 2076, 2325, 2850, 2990
ZrmI AGTACT 1 cut(s) 921
Zsp2I ATGCAT 1 cut(s) 1518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.