TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 20 - 190 | 7.2e-51 | TIR domain |
| TIR_2 | PF13676 | 22 - 121 | 5.4e-15 | TIR domain |
| NB-ARC | PF00931 | 202 - 371 | 1.3e-18 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 442 - 510 | 2.7e-20 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 715 - 760 | 1.5e-08 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 793 - 896 | 6.2e-07 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 998, 2417 |
| AarI | CACCTGC | 1 cut(s) | 1854 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2185 |
| Acc36I | ACCTGC | 2 cut(s) | 1854, 2502 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3317 |
| AccI | GTMKAC | 5 cut(s) | 927, 2189, 2330, 2526, 3288 |
| AccII | CGCG | 2 cut(s) | 94, 1503 |
| AciI | CCGC | 4 cut(s) | 10, 202, 254, 2650 |
| AclI | AACGTT | 1 cut(s) | 1447 |
| AclWI | GGATC | 8 cut(s) | 341, 486, 875, 1618, 2276, 2289, 2442, 2586 |
| AcoI | YGGCCR | 1 cut(s) | 976 |
| AcuI | CTGAAG | 4 cut(s) | 61, 336, 474, 2750 |
| AcyI | GRCGYC | 1 cut(s) | 2587 |
| AdeI | CACNNNGTG | 1 cut(s) | 3063 |
| AfaI | GTAC | 1 cut(s) | 2692 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1424, 3317 |
| AflII | CTTAAG | 1 cut(s) | 2377 |
| AflIII | ACRYGT | 1 cut(s) | 1867 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 320 |
| AjnI | CCWGG | 3 cut(s) | 120, 1546, 2941 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 773, 805 |
| Alw21I | GWGCWC | 1 cut(s) | 2900 |
| Alw26I | GTCTC | 3 cut(s) | 402, 880, 2794 |
| Alw44I | GTGCAC | 1 cut(s) | 2896 |
| AlwI | GGATC | 8 cut(s) | 341, 486, 875, 1618, 2276, 2289, 2442, 2586 |
| Ama87I | CYCGRG | 1 cut(s) | 1970 |
| AoxI | GGCC | 4 cut(s) | 123, 976, 1408, 2509 |
| ApaLI | GTGCAC | 1 cut(s) | 2896 |
| ApeKI | GCWGC | 5 cut(s) | 458, 2259, 2409, 2652, 2878 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 213, 245 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1787 |
| AspLEI | GCGC | 2 cut(s) | 96, 2744 |
| AspS9I | GGNCC | 4 cut(s) | 109, 216, 1435, 2939 |
| AsuC2I | CCSGG | 1 cut(s) | 980 |
| AsuHPI | GGTGA | 4 cut(s) | 832, 1072, 1935, 2006 |
| AsuII | TTCGAA | 1 cut(s) | 3213 |
| AvaI | CYCGRG | 1 cut(s) | 1970 |
| AvaII | GGWCC | 4 cut(s) | 109, 216, 1435, 2939 |
| AxyI | CCTNAGG | 1 cut(s) | 2430 |
| BaeGI | GKGCMC | 1 cut(s) | 2900 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2792, 2825 |
| BamHI | GGATCC | 1 cut(s) | 2281 |
| BanII | GRGCYC | 1 cut(s) | 1890 |
| BauI | CACGAG | 1 cut(s) | 2159 |
| BbsI | GAAGAC | 2 cut(s) | 229, 2035 |
| Bbv12I | GWGCWC | 1 cut(s) | 2900 |
| BbvCI | CCTCAGC | 1 cut(s) | 1269 |
| BbvI | GCAGC | 5 cut(s) | 445, 2246, 2396, 2664, 2865 |
| BceAI | ACGGC | 1 cut(s) | 1521 |
| BciT130I | CCWGG | 3 cut(s) | 122, 1548, 2943 |
| BclI | TGATCA | 1 cut(s) | 394 |
| BcnI | CCSGG | 1 cut(s) | 980 |
| BcoDI | GTCTC | 3 cut(s) | 402, 880, 2794 |
| BfmI | CTRYAG | 1 cut(s) | 2933 |
| BfrI | CTTAAG | 1 cut(s) | 2377 |
| BfuAI | ACCTGC | 2 cut(s) | 1854, 2502 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2508 |
| BglII | AGATCT | 1 cut(s) | 2902 |
| BisI | GCNGC | 5 cut(s) | 459, 2260, 2410, 2653, 2879 |
| BlsI | GCNGC | 5 cut(s) | 460, 2261, 2411, 2654, 2880 |
| Bme1390I | CCNGG | 4 cut(s) | 122, 980, 1548, 2943 |
| Bme18I | GGWCC | 4 cut(s) | 109, 216, 1435, 2939 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 320 |
| BmeT110I | CYCGRG | 1 cut(s) | 1970 |
| BmgT120I | GGNCC | 4 cut(s) | 109, 216, 1435, 2939 |
| BmiI | GGNNCC | 5 cut(s) | 217, 1889, 2283, 2940, 2984 |
| BmrFI | CCNGG | 4 cut(s) | 122, 980, 1548, 2943 |
| BmrI | ACTGGG | 2 cut(s) | 320, 1582 |
| BmsI | GCATC | 9 cut(s) | 690, 846, 884, 1476, 1570, 1591, 1613, 2620, 3265 |
| BmuI | ACTGGG | 2 cut(s) | 320, 1582 |
| BpiI | GAAGAC | 2 cut(s) | 229, 2035 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 430, 462, 873, 905 |
| BpmI | CTGGAG | 1 cut(s) | 188 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1269, 2255 |
| Bpu14I | TTCGAA | 1 cut(s) | 3213 |
| BpuEI | CTTGAG | 6 cut(s) | 91, 226, 293, 1111, 1132, 2096 |
| BpuMI | CCSGG | 1 cut(s) | 980 |
| BsaBI | GATNNNNATC | 2 cut(s) | 345, 2547 |
| BsaHI | GRCGYC | 1 cut(s) | 2587 |
| BsaJI | CCNNGG | 9 cut(s) | 211, 843, 979, 1546, 1720, 2087, 2454, 2745, 2987 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1818, 1848 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1424, 3317 |
| Bse1I | ACTGG | 8 cut(s) | 171, 261, 315, 329, 592, 1577, 1784, 2017 |
| Bse21I | CCTNAGG | 1 cut(s) | 2430 |
| Bse3DI | GCAATG | 1 cut(s) | 1380 |
| Bse8I | GATNNNNATC | 2 cut(s) | 345, 2547 |
| BseBI | CCWGG | 3 cut(s) | 122, 1548, 2943 |
| BseDI | CCNNGG | 9 cut(s) | 211, 843, 979, 1546, 1720, 2087, 2454, 2745, 2987 |
| BseJI | GATNNNNATC | 2 cut(s) | 345, 2547 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1424, 3317 |
| BseMI | GCAATG | 1 cut(s) | 1380 |
| BseMII | CTCAG | 7 cut(s) | 1283, 1694, 1876, 1930, 2246, 2518, 2967 |
| BseNI | ACTGG | 8 cut(s) | 171, 261, 315, 329, 592, 1577, 1784, 2017 |
| BseRI | GAGGAG | 4 cut(s) | 22, 290, 548, 2093 |
| BseSI | GKGCMC | 1 cut(s) | 2900 |
| BseXI | GCAGC | 5 cut(s) | 445, 2246, 2396, 2664, 2865 |
| BseYI | CCCAGC | 4 cut(s) | 474, 2517, 3130, 3143 |
| BsgI | GTGCAG | 1 cut(s) | 2737 |
| Bsh1236I | CGCG | 2 cut(s) | 94, 1503 |
| BshFI | GGCC | 4 cut(s) | 125, 978, 1410, 2511 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2900 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1970 |
| BsiSI | CCGG | 1 cut(s) | 979 |
| BslFI | GGGAC | 6 cut(s) | 327, 1346, 2186, 2952, 3147, 3260 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1424, 3317 |
| BsmAI | GTCTC | 3 cut(s) | 402, 880, 2794 |
| BsmBI | CGTCTC | 1 cut(s) | 402 |
| BsmFI | GGGAC | 6 cut(s) | 327, 1346, 2186, 2952, 3147, 3260 |
| BsmI | GAATGC | 1 cut(s) | 2203 |
| BsnI | GGCC | 4 cut(s) | 125, 978, 1410, 2511 |
| BsoBI | CYCGRG | 1 cut(s) | 1970 |
| Bsp119I | TTCGAA | 1 cut(s) | 3213 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1890, 2900 |
| Bsp1407I | TGTACA | 1 cut(s) | 2690 |
| Bsp19I | CCATGG | 1 cut(s) | 1720 |
| Bsp68I | TCGCGA | 1 cut(s) | 1503 |
| BspACI | CCGC | 4 cut(s) | 10, 202, 254, 2650 |
| BspANI | GGCC | 4 cut(s) | 125, 978, 1410, 2511 |
| BspCNI | CTCAG | 7 cut(s) | 1282, 1695, 1875, 1929, 2247, 2517, 2968 |
| BspFNI | CGCG | 2 cut(s) | 94, 1503 |
| BspHI | TCATGA | 1 cut(s) | 1282 |
| BspLI | GGNNCC | 5 cut(s) | 217, 1889, 2283, 2940, 2984 |
| BspMI | ACCTGC | 2 cut(s) | 1854, 2502 |
| BspPI | GGATC | 8 cut(s) | 341, 486, 875, 1618, 2276, 2289, 2442, 2586 |
| BspQI | GCTCTTC | 1 cut(s) | 1691 |
| BspT104I | TTCGAA | 1 cut(s) | 3213 |
| BspTI | CTTAAG | 1 cut(s) | 2377 |
| BsrDI | GCAATG | 1 cut(s) | 1380 |
| BsrGI | TGTACA | 1 cut(s) | 2690 |
| BsrI | ACTGG | 8 cut(s) | 171, 261, 315, 329, 592, 1577, 1784, 2017 |
| BssECI | CCNNGG | 9 cut(s) | 211, 843, 979, 1546, 1720, 2087, 2454, 2745, 2987 |
| BssNAI | GTATAC | 1 cut(s) | 2527 |
| BssNI | GRCGYC | 1 cut(s) | 2587 |
| BssSI | CACGAG | 1 cut(s) | 2159 |
| BssT1I | CCWWGG | 4 cut(s) | 211, 1720, 2087, 2454 |
| Bst1107I | GTATAC | 1 cut(s) | 2527 |
| Bst2BI | CACGAG | 1 cut(s) | 2159 |
| Bst2UI | CCWGG | 3 cut(s) | 122, 1548, 2943 |
| Bst4CI | ACNGT | 8 cut(s) | 198, 697, 965, 1462, 1743, 2480, 2627, 3286 |
| Bst6I | CTCTTC | 2 cut(s) | 40, 1691 |
| BstACI | GRCGYC | 1 cut(s) | 2587 |
| BstAFI | CTTAAG | 1 cut(s) | 2377 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1495, 2494 |
| BstAUI | TGTACA | 1 cut(s) | 2690 |
| BstBI | TTCGAA | 1 cut(s) | 3213 |
| BstC8I | GCNNGC | 2 cut(s) | 1101, 2537 |
| BstDSI | CCRYGG | 2 cut(s) | 1720, 2987 |
| BstFNI | CGCG | 2 cut(s) | 94, 1503 |
| BstHHI | GCGC | 2 cut(s) | 96, 2744 |
| BstMAI | GTCTC | 3 cut(s) | 402, 880, 2794 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 26, 984, 1486, 1495, 2494, 2508, 2643, 2652 |
| BstNI | CCWGG | 3 cut(s) | 122, 1548, 2943 |
| BstNSI | RCATGY | 1 cut(s) | 1103 |
| BstSCI | CCNGG | 4 cut(s) | 120, 978, 1546, 2941 |
| BstSFI | CTRYAG | 1 cut(s) | 2933 |
| BstSLI | GKGCMC | 1 cut(s) | 2900 |
| BstUI | CGCG | 2 cut(s) | 94, 1503 |
| BstV1I | GCAGC | 5 cut(s) | 445, 2246, 2396, 2664, 2865 |
| BstV2I | GAAGAC | 2 cut(s) | 229, 2035 |
| BstX2I | RGATCY | 6 cut(s) | 478, 1610, 2281, 2434, 2578, 2902 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2024 |
| BstYI | RGATCY | 6 cut(s) | 478, 1610, 2281, 2434, 2578, 2902 |
| BstZ17I | GTATAC | 1 cut(s) | 2527 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2430 |
| BsuRI | GGCC | 4 cut(s) | 125, 978, 1410, 2511 |
| BtgI | CCRYGG | 2 cut(s) | 1720, 2987 |
| BtsI | GCAGTG | 3 cut(s) | 2208, 2754, 2907 |
| BtsIMutI | CAGTG | 9 cut(s) | 232, 308, 1570, 2208, 2286, 2476, 2512, 2754, 2907 |
| BtuMI | TCGCGA | 1 cut(s) | 1503 |
| BveI | ACCTGC | 2 cut(s) | 1854, 2502 |
| Cac8I | GCNNGC | 2 cut(s) | 1101, 2537 |
| CciI | TCATGA | 1 cut(s) | 1282 |
| CfoI | GCGC | 2 cut(s) | 96, 2744 |
| Cfr13I | GGNCC | 4 cut(s) | 109, 216, 1435, 2939 |
| CseI | GACGC | 3 cut(s) | 2300, 2576, 2884 |
| CsiI | ACCWGGT | 1 cut(s) | 2941 |
| Csp6I | GTAC | 1 cut(s) | 2691 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2983, 3018 |
| CviQI | GTAC | 1 cut(s) | 2691 |
| DraI | TTTAAA | 1 cut(s) | 1108 |
| DraIII | CACNNNGTG | 1 cut(s) | 3063 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2185 |
| DriI | GACNNNNNGTC | 1 cut(s) | 320 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2185 |
| EaeI | YGGCCR | 1 cut(s) | 976 |
| Eam1104I | CTCTTC | 2 cut(s) | 40, 1691 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 320 |
| EarI | CTCTTC | 2 cut(s) | 40, 1691 |
| Eco130I | CCWWGG | 4 cut(s) | 211, 1720, 2087, 2454 |
| Eco24I | GRGCYC | 1 cut(s) | 1890 |
| Eco32I | GATATC | 1 cut(s) | 823 |
| Eco47I | GGWCC | 4 cut(s) | 109, 216, 1435, 2939 |
| Eco57I | CTGAAG | 4 cut(s) | 61, 336, 474, 2750 |
| Eco81I | CCTNAGG | 1 cut(s) | 2430 |
| Eco88I | CYCGRG | 1 cut(s) | 1970 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1435, 2939 |
| EcoRI | GAATTC | 1 cut(s) | 1428 |
| EcoRII | CCWGG | 3 cut(s) | 120, 1546, 2941 |
| EcoRV | GATATC | 1 cut(s) | 823 |
| EcoT14I | CCWWGG | 4 cut(s) | 211, 1720, 2087, 2454 |
| EcoT22I | ATGCAT | 2 cut(s) | 1491, 1606 |
| EcoT38I | GRGCYC | 1 cut(s) | 1890 |
| ErhI | CCWWGG | 4 cut(s) | 211, 1720, 2087, 2454 |
| Esp3I | CGTCTC | 1 cut(s) | 402 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 498, 530, 1122, 1154, 2029, 2061, 2434, 2466 |
| FaqI | GGGAC | 6 cut(s) | 327, 1346, 2186, 2952, 3147, 3260 |
| FauI | CCCGC | 2 cut(s) | 17, 195 |
| FbaI | TGATCA | 1 cut(s) | 394 |
| FblI | GTMKAC | 5 cut(s) | 927, 2189, 2330, 2526, 3288 |
| Fnu4HI | GCNGC | 5 cut(s) | 459, 2260, 2410, 2653, 2879 |
| FriOI | GRGCYC | 1 cut(s) | 1890 |
| Fsp4HI | GCNGC | 5 cut(s) | 459, 2260, 2410, 2653, 2879 |
| GlaI | GCGC | 2 cut(s) | 95, 2743 |
| GluI | GCNGC | 5 cut(s) | 459, 2260, 2410, 2653, 2879 |
| GsaI | CCCAGC | 4 cut(s) | 478, 2521, 3134, 3147 |
| GsuI | CTGGAG | 1 cut(s) | 188 |
| HaeIII | GGCC | 4 cut(s) | 125, 978, 1410, 2511 |
| HapII | CCGG | 1 cut(s) | 979 |
| HgaI | GACGC | 3 cut(s) | 2300, 2576, 2884 |
| HhaI | GCGC | 2 cut(s) | 96, 2744 |
| Hin1I | GRCGYC | 1 cut(s) | 2587 |
| Hin6I | GCGC | 2 cut(s) | 94, 2742 |
| HinP1I | GCGC | 2 cut(s) | 94, 2742 |
| HincII | GTYRAC | 3 cut(s) | 859, 928, 2331 |
| HindII | GTYRAC | 3 cut(s) | 859, 928, 2331 |
| HindIII | AAGCTT | 2 cut(s) | 738, 2663 |
| HpaII | CCGG | 1 cut(s) | 979 |
| HphI | GGTGA | 4 cut(s) | 832, 1072, 1935, 2006 |
| Hpy166II | GTNNAC | 8 cut(s) | 859, 928, 2014, 2190, 2331, 2527, 2898, 3289 |
| Hpy8I | GTNNAC | 8 cut(s) | 859, 928, 2014, 2190, 2331, 2527, 2898, 3289 |
| Hpy99I | CGWCG | 1 cut(s) | 914 |
| HpyCH4III | ACNGT | 8 cut(s) | 198, 697, 965, 1462, 1743, 2480, 2627, 3286 |
| HpyCH4IV | ACGT | 2 cut(s) | 1447, 1869 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 26, 984, 1486, 1495, 2494, 2508, 2643, 2652 |
| HpySE526I | ACGT | 2 cut(s) | 1447, 1869 |
| Hsp92I | GRCGYC | 1 cut(s) | 2587 |
| HspAI | GCGC | 2 cut(s) | 94, 2742 |
| Ksp22I | TGATCA | 1 cut(s) | 394 |
| LguI | GCTCTTC | 1 cut(s) | 1691 |
| LmnI | GCTCC | 5 cut(s) | 277, 937, 1893, 2080, 2873 |
| Lsp1109I | GCAGC | 5 cut(s) | 445, 2246, 2396, 2664, 2865 |
| LweI | GCATC | 9 cut(s) | 690, 846, 884, 1476, 1570, 1591, 1613, 2620, 3265 |
| MabI | ACCWGGT | 1 cut(s) | 2941 |
| MaeII | ACGT | 2 cut(s) | 1447, 1869 |
| MaeIII | GTNAC | 6 cut(s) | 965, 1456, 1538, 1856, 2480, 2966 |
| MfeI | CAATTG | 3 cut(s) | 941, 2000, 2404 |
| MflI | RGATCY | 6 cut(s) | 478, 1610, 2281, 2434, 2578, 2902 |
| MhlI | GDGCHC | 2 cut(s) | 1890, 2900 |
| MlyI | GAGTC | 6 cut(s) | 590, 882, 962, 1080, 1623, 2025 |
| MmeI | TCCRAC | 2 cut(s) | 613, 640 |
| Mph1103I | ATGCAT | 2 cut(s) | 1491, 1606 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1787 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2616 |
| MspA1I | CMGCKG | 3 cut(s) | 494, 1480, 1992 |
| MspCI | CTTAAG | 1 cut(s) | 2377 |
| MspI | CCGG | 1 cut(s) | 979 |
| MspR9I | CCNGG | 4 cut(s) | 122, 980, 1548, 2943 |
| MunI | CAATTG | 3 cut(s) | 941, 2000, 2404 |
| Mva1269I | GAATGC | 1 cut(s) | 2203 |
| MvaI | CCWGG | 3 cut(s) | 122, 1548, 2943 |
| MvnI | CGCG | 2 cut(s) | 94, 1503 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 26, 984, 1486, 1495, 2494, 2508, 2643, 2652 |
| NciI | CCSGG | 1 cut(s) | 980 |
| NcoI | CCATGG | 1 cut(s) | 1720 |
| NlaIV | GGNNCC | 5 cut(s) | 217, 1889, 2283, 2940, 2984 |
| NmuCI | GTSAC | 3 cut(s) | 965, 1538, 2966 |
| NruI | TCGCGA | 1 cut(s) | 1503 |
| NsiI | ATGCAT | 2 cut(s) | 1491, 1606 |
| NspI | RCATGY | 1 cut(s) | 1103 |
| NspV | TTCGAA | 1 cut(s) | 3213 |
| PaeI | GCATGC | 1 cut(s) | 1103 |
| PaeR7I | CTCGAG | 1 cut(s) | 1970 |
| PagI | TCATGA | 1 cut(s) | 1282 |
| PaqCI | CACCTGC | 1 cut(s) | 1854 |
| PciSI | GCTCTTC | 1 cut(s) | 1691 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3210 |
| PctI | GAATGC | 1 cut(s) | 2203 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1787 |
| PfeI | GAWTC | 9 cut(s) | 141, 257, 1040, 1076, 1421, 1788, 1880, 1906, 2855 |
| PflFI | GACNNNGTC | 1 cut(s) | 1382 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3317 |
| PkrI | GCNGC | 5 cut(s) | 460, 2261, 2411, 2654, 2880 |
| PleI | GAGTC | 6 cut(s) | 590, 882, 962, 1080, 1623, 2025 |
| PpsI | GAGTC | 6 cut(s) | 590, 882, 962, 1080, 1623, 2025 |
| PpuMI | RGGWCCY | 2 cut(s) | 1435, 2939 |
| PsiI | TTATAA | 2 cut(s) | 998, 2417 |
| Psp1406I | AACGTT | 1 cut(s) | 1447 |
| Psp5II | RGGWCCY | 2 cut(s) | 1435, 2939 |
| Psp6I | CCWGG | 3 cut(s) | 120, 1546, 2941 |
| PspFI | CCCAGC | 4 cut(s) | 474, 2517, 3130, 3143 |
| PspGI | CCWGG | 3 cut(s) | 120, 1546, 2941 |
| PspN4I | GGNNCC | 5 cut(s) | 217, 1889, 2283, 2940, 2984 |
| PspPI | GGNCC | 4 cut(s) | 109, 216, 1435, 2939 |
| PspPPI | RGGWCCY | 2 cut(s) | 1435, 2939 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 433, 465 |
| PsuI | RGATCY | 6 cut(s) | 478, 1610, 2281, 2434, 2578, 2902 |
| PsyI | GACNNNGTC | 1 cut(s) | 1382 |
| PvuII | CAGCTG | 3 cut(s) | 494, 1480, 1992 |
| RruI | TCGCGA | 1 cut(s) | 1503 |
| RsaI | GTAC | 1 cut(s) | 2692 |
| RsaNI | GTAC | 1 cut(s) | 2691 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2616 |
| SalI | GTCGAC | 2 cut(s) | 926, 2329 |
| SapI | GCTCTTC | 1 cut(s) | 1691 |
| SatI | GCNGC | 5 cut(s) | 459, 2260, 2410, 2653, 2879 |
| Sau96I | GGNCC | 4 cut(s) | 109, 216, 1435, 2939 |
| SchI | GAGTC | 6 cut(s) | 590, 882, 962, 1080, 1623, 2025 |
| ScrFI | CCNGG | 4 cut(s) | 122, 980, 1548, 2943 |
| SduI | GDGCHC | 2 cut(s) | 1890, 2900 |
| SexAI | ACCWGGT | 1 cut(s) | 2941 |
| SfaNI | GCATC | 9 cut(s) | 690, 846, 884, 1476, 1570, 1591, 1613, 2620, 3265 |
| SfcI | CTRYAG | 1 cut(s) | 2933 |
| Sfr274I | CTCGAG | 1 cut(s) | 1970 |
| SfuI | TTCGAA | 1 cut(s) | 3213 |
| SinI | GGWCC | 4 cut(s) | 109, 216, 1435, 2939 |
| SlaI | CTCGAG | 1 cut(s) | 1970 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2616 |
| SmlI | CTYRAG | 8 cut(s) | 70, 241, 272, 1090, 1147, 1970, 2075, 2377 |
| SmoI | CTYRAG | 8 cut(s) | 70, 241, 272, 1090, 1147, 1970, 2075, 2377 |
| SphI | GCATGC | 1 cut(s) | 1103 |
| SsiI | CCGC | 4 cut(s) | 10, 202, 254, 2650 |
| SspI | AATATT | 1 cut(s) | 1395 |
| StyD4I | CCNGG | 4 cut(s) | 120, 978, 1546, 2941 |
| StyI | CCWWGG | 4 cut(s) | 211, 1720, 2087, 2454 |
| TaaI | ACNGT | 8 cut(s) | 198, 697, 965, 1462, 1743, 2480, 2627, 3286 |
| TaiI | ACGT | 2 cut(s) | 1450, 1872 |
| TaqI | TCGA | 5 cut(s) | 927, 1776, 1971, 2330, 3213 |
| TatI | WGTACW | 1 cut(s) | 2690 |
| TfiI | GAWTC | 9 cut(s) | 141, 257, 1040, 1076, 1421, 1788, 1880, 1906, 2855 |
| TscAI | CASTG | 9 cut(s) | 232, 315, 1577, 2215, 2293, 2483, 2512, 2761, 2914 |
| TseFI | GTSAC | 3 cut(s) | 965, 1538, 2966 |
| TseI | GCWGC | 5 cut(s) | 458, 2259, 2409, 2652, 2878 |
| Tsp45I | GTSAC | 3 cut(s) | 965, 1538, 2966 |
| TspGWI | ACGGA | 5 cut(s) | 122, 1514, 2075, 2333, 2356 |
| TspRI | CASTG | 9 cut(s) | 232, 315, 1577, 2215, 2293, 2483, 2512, 2761, 2914 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1382 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3317 |
| Vha464I | CTTAAG | 1 cut(s) | 2377 |
| VneI | GTGCAC | 1 cut(s) | 2896 |
| VpaK11BI | GGWCC | 4 cut(s) | 109, 216, 1435, 2939 |
| XbaI | TCTAGA | 4 cut(s) | 1636, 1795, 2614, 2812 |
| XceI | RCATGY | 1 cut(s) | 1103 |
| XhoI | CTCGAG | 1 cut(s) | 1970 |
| XmiI | GTMKAC | 5 cut(s) | 927, 2189, 2330, 2526, 3288 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1787 |
| Zsp2I | ATGCAT | 2 cut(s) | 1491, 1606 |