TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 14 - 183 | 1.2e-53 | TIR domain |
| TIR_2 | PF13676 | 16 - 112 | 4.2e-15 | TIR domain |
| NB-ARC | PF00931 | 196 - 366 | 3.1e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 434 - 505 | 3.6e-20 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 793 - 901 | 1e-06 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 983 |
| Acc36I | ACCTGC | 1 cut(s) | 1833 |
| AccB1I | GGYRCC | 1 cut(s) | 2912 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2383 |
| AccI | GTMKAC | 2 cut(s) | 519, 973 |
| AccII | CGCG | 2 cut(s) | 591, 2338 |
| AciI | CCGC | 5 cut(s) | 76, 236, 680, 1386, 1828 |
| AclWI | GGATC | 9 cut(s) | 44, 212, 323, 499, 631, 860, 2484, 2652, 3193 |
| AcoI | YGGCCR | 2 cut(s) | 939, 3071 |
| AcsI | RAATTY | 8 cut(s) | 704, 1245, 1260, 1954, 2007, 2271, 2674, 3121 |
| AcuI | CTGAAG | 6 cut(s) | 43, 462, 1060, 1406, 1630, 1793 |
| AfaI | GTAC | 6 cut(s) | 569, 891, 1651, 1704, 1832, 3046 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 103, 412, 2383 |
| AflII | CTTAAG | 3 cut(s) | 811, 2813, 2828 |
| AflIII | ACRYGT | 2 cut(s) | 45, 2336 |
| AhlI | ACTAGT | 2 cut(s) | 2621, 3299 |
| AjiI | CACGTC | 1 cut(s) | 46 |
| AjnI | CCWGG | 7 cut(s) | 78, 341, 964, 1809, 1862, 2740, 2869 |
| Alw21I | GWGCWC | 7 cut(s) | 436, 548, 1026, 1074, 2214, 2571, 2795 |
| Alw26I | GTCTC | 6 cut(s) | 865, 1476, 1669, 1710, 1943, 2813 |
| Alw44I | GTGCAC | 2 cut(s) | 1022, 2791 |
| AlwI | GGATC | 9 cut(s) | 44, 212, 323, 499, 631, 860, 2484, 2652, 3193 |
| Ama87I | CYCGRG | 2 cut(s) | 2480, 2916 |
| AoxI | GGCC | 5 cut(s) | 90, 295, 403, 939, 3071 |
| ApaLI | GTGCAC | 2 cut(s) | 1022, 2791 |
| ApeKI | GCWGC | 5 cut(s) | 446, 535, 879, 2322, 2445 |
| ApoI | RAATTY | 8 cut(s) | 704, 1245, 1260, 1954, 2007, 2271, 2674, 3121 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1036, 1068 |
| AseI | ATTAAT | 1 cut(s) | 2774 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 583, 795, 1245, 1260, 1500, 2554 |
| AspLEI | GCGC | 1 cut(s) | 2291 |
| AspS9I | GGNCC | 4 cut(s) | 91, 295, 922, 962 |
| AsuC2I | CCSGG | 1 cut(s) | 2442 |
| AsuHPI | GGTGA | 6 cut(s) | 77, 848, 1914, 1985, 2153, 2366 |
| AsuII | TTCGAA | 1 cut(s) | 1093 |
| AvaI | CYCGRG | 2 cut(s) | 2480, 2916 |
| AvaII | GGWCC | 2 cut(s) | 922, 962 |
| AxyI | CCTNAGG | 1 cut(s) | 2472 |
| BaeGI | GKGCMC | 3 cut(s) | 1026, 2795, 2917 |
| BanI | GGYRCC | 1 cut(s) | 2912 |
| BanII | GRGCYC | 1 cut(s) | 1074 |
| BbsI | GAAGAC | 3 cut(s) | 75, 211, 3212 |
| Bbv12I | GWGCWC | 7 cut(s) | 436, 548, 1026, 1074, 2214, 2571, 2795 |
| BbvI | GCAGC | 5 cut(s) | 458, 547, 866, 2334, 2432 |
| BccI | CCATC | 8 cut(s) | 701, 1740, 2132, 2149, 2284, 2776, 2831, 2846 |
| BceAI | ACGGC | 2 cut(s) | 105, 926 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1073, 1107, 2782, 2816 |
| BciT130I | CCWGG | 7 cut(s) | 80, 343, 966, 1811, 1864, 2742, 2871 |
| BciVI | GTATCC | 1 cut(s) | 2170 |
| BcnI | CCSGG | 1 cut(s) | 2442 |
| BcoDI | GTCTC | 6 cut(s) | 865, 1476, 1669, 1710, 1943, 2813 |
| BcuI | ACTAGT | 2 cut(s) | 2621, 3299 |
| BfaI | CTAG | 9 cut(s) | 201, 531, 1007, 1166, 1841, 2622, 2636, 2844, 3300 |
| BfmI | CTRYAG | 1 cut(s) | 2320 |
| BfrI | CTTAAG | 3 cut(s) | 811, 2813, 2828 |
| BfuAI | ACCTGC | 1 cut(s) | 1833 |
| BfuI | GTATCC | 1 cut(s) | 2170 |
| BglII | AGATCT | 1 cut(s) | 1628 |
| BisI | GCNGC | 5 cut(s) | 447, 536, 880, 2323, 2446 |
| BlpI | GCTNAGC | 1 cut(s) | 498 |
| BlsI | GCNGC | 5 cut(s) | 448, 537, 881, 2324, 2447 |
| Bme1390I | CCNGG | 8 cut(s) | 80, 343, 966, 1811, 1864, 2442, 2742, 2871 |
| Bme18I | GGWCC | 2 cut(s) | 922, 962 |
| BmeT110I | CYCGRG | 2 cut(s) | 2480, 2916 |
| BmgBI | CACGTC | 1 cut(s) | 46 |
| BmgT120I | GGNCC | 4 cut(s) | 91, 295, 922, 962 |
| BmiI | GGNNCC | 1 cut(s) | 2914 |
| BmrFI | CCNGG | 8 cut(s) | 80, 343, 966, 1811, 1864, 2442, 2742, 2871 |
| BmrI | ACTGGG | 1 cut(s) | 566 |
| BmuI | ACTGGG | 1 cut(s) | 566 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3212 |
| BpiI | GAAGAC | 3 cut(s) | 75, 211, 3212 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 418, 450 |
| BpmI | CTGGAG | 2 cut(s) | 560, 1734 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 498 |
| Bpu14I | TTCGAA | 1 cut(s) | 1093 |
| BpuEI | CTTGAG | 9 cut(s) | 73, 275, 1088, 1114, 1642, 1892, 1918, 1970, 2585 |
| BpuMI | CCSGG | 1 cut(s) | 2442 |
| BsaBI | GATNNNNATC | 1 cut(s) | 912 |
| BsaI | GGTCTC | 1 cut(s) | 2813 |
| BsaJI | CCNNGG | 3 cut(s) | 79, 1986, 2066 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 103, 412, 2383 |
| Bse118I | RCCGGY | 1 cut(s) | 401 |
| Bse1I | ACTGG | 3 cut(s) | 38, 572, 1717 |
| Bse21I | CCTNAGG | 1 cut(s) | 2472 |
| Bse8I | GATNNNNATC | 1 cut(s) | 912 |
| BseBI | CCWGG | 7 cut(s) | 80, 343, 966, 1811, 1864, 2742, 2871 |
| BseDI | CCNNGG | 3 cut(s) | 79, 1986, 2066 |
| BseGI | GGATG | 7 cut(s) | 8, 2143, 2189, 2276, 2787, 2823, 2879 |
| BseJI | GATNNNNATC | 1 cut(s) | 912 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 103, 412, 2383 |
| BseMII | CTCAG | 4 cut(s) | 489, 1288, 1909, 2560 |
| BseNI | ACTGG | 3 cut(s) | 38, 572, 1717 |
| BseRI | GAGGAG | 2 cut(s) | 13, 272 |
| BseSI | GKGCMC | 3 cut(s) | 1026, 2795, 2917 |
| BseXI | GCAGC | 5 cut(s) | 458, 547, 866, 2334, 2432 |
| BseYI | CCCAGC | 1 cut(s) | 3115 |
| BsgI | GTGCAG | 2 cut(s) | 287, 2635 |
| Bsh1236I | CGCG | 2 cut(s) | 591, 2338 |
| BshFI | GGCC | 5 cut(s) | 92, 297, 405, 941, 3073 |
| BshNI | GGYRCC | 1 cut(s) | 2912 |
| BsiHKAI | GWGCWC | 7 cut(s) | 436, 548, 1026, 1074, 2214, 2571, 2795 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2480, 2916 |
| BsiSI | CCGG | 2 cut(s) | 402, 2442 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 103, 412, 2383 |
| BsmAI | GTCTC | 6 cut(s) | 865, 1476, 1669, 1710, 1943, 2813 |
| BsmI | GAATGC | 3 cut(s) | 1658, 1858, 2673 |
| BsnI | GGCC | 5 cut(s) | 92, 297, 405, 941, 3073 |
| Bso31I | GGTCTC | 1 cut(s) | 2813 |
| BsoBI | CYCGRG | 2 cut(s) | 2480, 2916 |
| Bsp119I | TTCGAA | 1 cut(s) | 1093 |
| Bsp1286I | GDGCHC | 8 cut(s) | 436, 548, 1026, 1074, 2214, 2571, 2795, 2917 |
| Bsp1407I | TGTACA | 1 cut(s) | 1702 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 498 |
| BspACI | CCGC | 5 cut(s) | 76, 236, 680, 1386, 1828 |
| BspANI | GGCC | 5 cut(s) | 92, 297, 405, 941, 3073 |
| BspCNI | CTCAG | 4 cut(s) | 490, 1287, 1908, 2559 |
| BspFNI | CGCG | 2 cut(s) | 591, 2338 |
| BspHI | TCATGA | 1 cut(s) | 1461 |
| BspLI | GGNNCC | 1 cut(s) | 2914 |
| BspMAI | CTGCAG | 1 cut(s) | 2324 |
| BspMI | ACCTGC | 1 cut(s) | 1833 |
| BspPI | GGATC | 9 cut(s) | 44, 212, 323, 499, 631, 860, 2484, 2652, 3193 |
| BspQI | GCTCTTC | 2 cut(s) | 381, 1079 |
| BspT104I | TTCGAA | 1 cut(s) | 1093 |
| BspT107I | GGYRCC | 1 cut(s) | 2912 |
| BspTI | CTTAAG | 3 cut(s) | 811, 2813, 2828 |
| BspTNI | GGTCTC | 1 cut(s) | 2813 |
| BsrFI | RCCGGY | 1 cut(s) | 401 |
| BsrGI | TGTACA | 1 cut(s) | 1702 |
| BsrI | ACTGG | 3 cut(s) | 38, 572, 1717 |
| BssAI | RCCGGY | 1 cut(s) | 401 |
| BssECI | CCNNGG | 3 cut(s) | 79, 1986, 2066 |
| BssT1I | CCWWGG | 1 cut(s) | 2066 |
| Bst2UI | CCWGG | 7 cut(s) | 80, 343, 966, 1811, 1864, 2742, 2871 |
| Bst4CI | ACNGT | 8 cut(s) | 180, 1100, 1151, 1382, 1441, 1973, 1990, 2971 |
| Bst6I | CTCTTC | 5 cut(s) | 148, 381, 1079, 1667, 2178 |
| BstAFI | CTTAAG | 3 cut(s) | 811, 2813, 2828 |
| BstAUI | TGTACA | 1 cut(s) | 1702 |
| BstBI | TTCGAA | 1 cut(s) | 1093 |
| BstC8I | GCNNGC | 8 cut(s) | 186, 339, 464, 1082, 1086, 1757, 2537, 3075 |
| BstDEI | CTNAG | 8 cut(s) | 149, 498, 553, 1274, 1895, 2472, 2546, 2711 |
| BstDSI | CCRYGG | 1 cut(s) | 1986 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 101 |
| BstF5I | GGATG | 7 cut(s) | 8, 2143, 2189, 2276, 2787, 2823, 2879 |
| BstFNI | CGCG | 2 cut(s) | 591, 2338 |
| BstHHI | GCGC | 1 cut(s) | 2291 |
| BstMAI | GTCTC | 6 cut(s) | 865, 1476, 1669, 1710, 1943, 2813 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 343, 793, 1465, 1756, 2541, 2550 |
| BstNI | CCWGG | 7 cut(s) | 80, 343, 966, 1811, 1864, 2742, 2871 |
| BstNSI | RCATGY | 2 cut(s) | 341, 1088 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3212 |
| BstSCI | CCNGG | 8 cut(s) | 78, 341, 964, 1809, 1862, 2440, 2740, 2869 |
| BstSFI | CTRYAG | 1 cut(s) | 2320 |
| BstSLI | GKGCMC | 3 cut(s) | 1026, 2795, 2917 |
| BstUI | CGCG | 2 cut(s) | 591, 2338 |
| BstV1I | GCAGC | 5 cut(s) | 458, 547, 866, 2334, 2432 |
| BstV2I | GAAGAC | 3 cut(s) | 75, 211, 3212 |
| BstX2I | RGATCY | 5 cut(s) | 36, 204, 1628, 2476, 3185 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2003 |
| BstYI | RGATCY | 5 cut(s) | 36, 204, 1628, 2476, 3185 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2472 |
| BsuI | GTATCC | 1 cut(s) | 2170 |
| BsuRI | GGCC | 5 cut(s) | 92, 297, 405, 941, 3073 |
| BtgI | CCRYGG | 1 cut(s) | 1986 |
| BtrI | CACGTC | 1 cut(s) | 46 |
| BtsCI | GGATG | 7 cut(s) | 8, 2143, 2189, 2276, 2787, 2823, 2879 |
| BtsI | GCAGTG | 5 cut(s) | 477, 570, 2647, 2652, 3160 |
| BtsIMutI | CAGTG | 8 cut(s) | 31, 477, 570, 1417, 1710, 2647, 2652, 3160 |
| BveI | ACCTGC | 1 cut(s) | 1833 |
| Cac8I | GCNNGC | 8 cut(s) | 186, 339, 464, 1082, 1086, 1757, 2537, 3075 |
| CciI | TCATGA | 1 cut(s) | 1461 |
| CfoI | GCGC | 1 cut(s) | 2291 |
| Cfr10I | RCCGGY | 1 cut(s) | 401 |
| Cfr13I | GGNCC | 4 cut(s) | 91, 295, 922, 962 |
| CsiI | ACCWGGT | 1 cut(s) | 1809 |
| Csp6I | GTAC | 6 cut(s) | 568, 890, 1650, 1703, 1831, 3045 |
| CviQI | GTAC | 6 cut(s) | 568, 890, 1650, 1703, 1831, 3045 |
| DdeI | CTNAG | 8 cut(s) | 149, 498, 553, 1274, 1895, 2472, 2546, 2711 |
| DraI | TTTAAA | 1 cut(s) | 2499 |
| EaeI | YGGCCR | 2 cut(s) | 939, 3071 |
| Eam1104I | CTCTTC | 5 cut(s) | 148, 381, 1079, 1667, 2178 |
| EarI | CTCTTC | 5 cut(s) | 148, 381, 1079, 1667, 2178 |
| Ecl136II | GAGCTC | 1 cut(s) | 1072 |
| Eco130I | CCWWGG | 1 cut(s) | 2066 |
| Eco24I | GRGCYC | 1 cut(s) | 1074 |
| Eco31I | GGTCTC | 1 cut(s) | 2813 |
| Eco32I | GATATC | 1 cut(s) | 808 |
| Eco47I | GGWCC | 2 cut(s) | 922, 962 |
| Eco53kI | GAGCTC | 1 cut(s) | 1072 |
| Eco57I | CTGAAG | 6 cut(s) | 43, 462, 1060, 1406, 1630, 1793 |
| Eco81I | CCTNAGG | 1 cut(s) | 2472 |
| Eco88I | CYCGRG | 2 cut(s) | 2480, 2916 |
| EcoICRI | GAGCTC | 1 cut(s) | 1072 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 101 |
| EcoRI | GAATTC | 2 cut(s) | 1245, 2007 |
| EcoRII | CCWGG | 7 cut(s) | 78, 341, 964, 1809, 1862, 2740, 2869 |
| EcoRV | GATATC | 1 cut(s) | 808 |
| EcoT14I | CCWWGG | 1 cut(s) | 2066 |
| EcoT22I | ATGCAT | 5 cut(s) | 373, 937, 958, 1470, 2978 |
| EcoT38I | GRGCYC | 1 cut(s) | 1074 |
| ErhI | CCWWGG | 1 cut(s) | 2066 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 780, 812, 2008, 2040 |
| FauI | CCCGC | 1 cut(s) | 83 |
| FauNDI | CATATG | 2 cut(s) | 918, 958 |
| FblI | GTMKAC | 2 cut(s) | 519, 973 |
| Fnu4HI | GCNGC | 5 cut(s) | 447, 536, 880, 2323, 2446 |
| FokI | GGATG | 6 cut(s) | 2150, 2176, 2263, 2794, 2810, 2886 |
| FriOI | GRGCYC | 1 cut(s) | 1074 |
| Fsp4HI | GCNGC | 5 cut(s) | 447, 536, 880, 2323, 2446 |
| FspBI | CTAG | 9 cut(s) | 201, 531, 1007, 1166, 1841, 2622, 2636, 2844, 3300 |
| GlaI | GCGC | 1 cut(s) | 2290 |
| GluI | GCNGC | 5 cut(s) | 447, 536, 880, 2323, 2446 |
| GsaI | CCCAGC | 1 cut(s) | 3119 |
| GsuI | CTGGAG | 2 cut(s) | 560, 1734 |
| HaeIII | GGCC | 5 cut(s) | 92, 297, 405, 941, 3073 |
| HapII | CCGG | 2 cut(s) | 402, 2442 |
| HhaI | GCGC | 1 cut(s) | 2291 |
| Hin6I | GCGC | 1 cut(s) | 2289 |
| HinP1I | GCGC | 1 cut(s) | 2289 |
| HincII | GTYRAC | 2 cut(s) | 520, 904 |
| HindII | GTYRAC | 2 cut(s) | 520, 904 |
| HindIII | AAGCTT | 2 cut(s) | 794, 3050 |
| HpaII | CCGG | 2 cut(s) | 402, 2442 |
| HphI | GGTGA | 6 cut(s) | 77, 848, 1914, 1985, 2153, 2366 |
| Hpy166II | GTNNAC | 8 cut(s) | 520, 568, 904, 974, 1024, 1993, 2793, 2838 |
| Hpy8I | GTNNAC | 8 cut(s) | 520, 568, 904, 974, 1024, 1993, 2793, 2838 |
| Hpy99I | CGWCG | 2 cut(s) | 47, 524 |
| HpyAV | CCTTC | 7 cut(s) | 342, 716, 1430, 1598, 2606, 2623, 3143 |
| HpyCH4III | ACNGT | 8 cut(s) | 180, 1100, 1151, 1382, 1441, 1973, 1990, 2971 |
| HpyCH4IV | ACGT | 2 cut(s) | 45, 858 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 343, 793, 1465, 1756, 2541, 2550 |
| HpyF3I | CTNAG | 8 cut(s) | 149, 498, 553, 1274, 1895, 2472, 2546, 2711 |
| HpySE526I | ACGT | 2 cut(s) | 45, 858 |
| HspAI | GCGC | 1 cut(s) | 2289 |
| LguI | GCTCTTC | 2 cut(s) | 381, 1079 |
| LmnI | GCTCC | 4 cut(s) | 145, 259, 1692, 1855 |
| Lsp1109I | GCAGC | 5 cut(s) | 458, 547, 866, 2334, 2432 |
| MabI | ACCWGGT | 1 cut(s) | 1809 |
| MaeI | CTAG | 9 cut(s) | 201, 531, 1007, 1166, 1841, 2622, 2636, 2844, 3300 |
| MaeII | ACGT | 2 cut(s) | 45, 858 |
| MaeIII | GTNAC | 6 cut(s) | 1435, 1866, 2141, 2332, 2714, 3155 |
| MfeI | CAATTG | 1 cut(s) | 1293 |
| MflI | RGATCY | 5 cut(s) | 36, 204, 1628, 2476, 3185 |
| MhlI | GDGCHC | 8 cut(s) | 436, 548, 1026, 1074, 2214, 2571, 2795, 2917 |
| MluI | ACGCGT | 1 cut(s) | 2336 |
| MlyI | GAGTC | 4 cut(s) | 1023, 1060, 1602, 2494 |
| MmeI | TCCRAC | 4 cut(s) | 556, 601, 625, 1714 |
| Mph1103I | ATGCAT | 5 cut(s) | 373, 937, 958, 1470, 2978 |
| MroXI | GAANNNNTTC | 6 cut(s) | 583, 795, 1245, 1260, 1500, 2554 |
| MslI | CAYNNNNRTG | 3 cut(s) | 416, 1346, 2416 |
| MspA1I | CMGCKG | 3 cut(s) | 538, 680, 1080 |
| MspCI | CTTAAG | 3 cut(s) | 811, 2813, 2828 |
| MspI | CCGG | 2 cut(s) | 402, 2442 |
| MspR9I | CCNGG | 8 cut(s) | 80, 343, 966, 1811, 1864, 2442, 2742, 2871 |
| MunI | CAATTG | 1 cut(s) | 1293 |
| Mva1269I | GAATGC | 3 cut(s) | 1658, 1858, 2673 |
| MvaI | CCWGG | 7 cut(s) | 80, 343, 966, 1811, 1864, 2742, 2871 |
| MvnI | CGCG | 2 cut(s) | 591, 2338 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 343, 793, 1465, 1756, 2541, 2550 |
| NciI | CCSGG | 1 cut(s) | 2442 |
| NdeI | CATATG | 2 cut(s) | 918, 958 |
| NlaIV | GGNNCC | 1 cut(s) | 2914 |
| NmeAIII | GCCGAG | 1 cut(s) | 508 |
| NmuCI | GTSAC | 4 cut(s) | 1866, 2141, 2714, 3155 |
| NsiI | ATGCAT | 5 cut(s) | 373, 937, 958, 1470, 2978 |
| NspI | RCATGY | 2 cut(s) | 341, 1088 |
| NspV | TTCGAA | 1 cut(s) | 1093 |
| PaeI | GCATGC | 2 cut(s) | 341, 1088 |
| PagI | TCATGA | 1 cut(s) | 1461 |
| PciSI | GCTCTTC | 2 cut(s) | 381, 1079 |
| PctI | GAATGC | 3 cut(s) | 1658, 1858, 2673 |
| PdmI | GAANNNNTTC | 6 cut(s) | 583, 795, 1245, 1260, 1500, 2554 |
| PflFI | GACNNNGTC | 2 cut(s) | 1013, 3002 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2383 |
| PfoI | TCCNGGA | 1 cut(s) | 964 |
| PkrI | GCNGC | 5 cut(s) | 448, 537, 881, 2324, 2447 |
| PleI | GAGTC | 4 cut(s) | 1022, 1059, 1602, 2493 |
| PpsI | GAGTC | 4 cut(s) | 1022, 1059, 1602, 2493 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3212 |
| PshBI | ATTAAT | 1 cut(s) | 2774 |
| PsiI | TTATAA | 1 cut(s) | 983 |
| Psp124BI | GAGCTC | 1 cut(s) | 1074 |
| Psp6I | CCWGG | 7 cut(s) | 78, 341, 964, 1809, 1862, 2740, 2869 |
| PspFI | CCCAGC | 1 cut(s) | 3115 |
| PspGI | CCWGG | 7 cut(s) | 78, 341, 964, 1809, 1862, 2740, 2869 |
| PspN4I | GGNNCC | 1 cut(s) | 2914 |
| PspPI | GGNCC | 4 cut(s) | 91, 295, 922, 962 |
| PstI | CTGCAG | 1 cut(s) | 2324 |
| PsuI | RGATCY | 5 cut(s) | 36, 204, 1628, 2476, 3185 |
| PsyI | GACNNNGTC | 2 cut(s) | 1013, 3002 |
| PvuII | CAGCTG | 2 cut(s) | 538, 1080 |
| RsaI | GTAC | 6 cut(s) | 569, 891, 1651, 1704, 1832, 3046 |
| RsaNI | GTAC | 6 cut(s) | 568, 890, 1650, 1703, 1831, 3045 |
| RseI | CAYNNNNRTG | 3 cut(s) | 416, 1346, 2416 |
| SacI | GAGCTC | 1 cut(s) | 1074 |
| SalI | GTCGAC | 1 cut(s) | 518 |
| SapI | GCTCTTC | 2 cut(s) | 381, 1079 |
| SatI | GCNGC | 5 cut(s) | 447, 536, 880, 2323, 2446 |
| Sau96I | GGNCC | 4 cut(s) | 91, 295, 922, 962 |
| SchI | GAGTC | 4 cut(s) | 1023, 1060, 1602, 2494 |
| ScrFI | CCNGG | 8 cut(s) | 80, 343, 966, 1811, 1864, 2442, 2742, 2871 |
| SduI | GDGCHC | 8 cut(s) | 436, 548, 1026, 1074, 2214, 2571, 2795, 2917 |
| SexAI | ACCWGGT | 1 cut(s) | 1809 |
| SfcI | CTRYAG | 1 cut(s) | 2320 |
| SfuI | TTCGAA | 1 cut(s) | 1093 |
| SinI | GGWCC | 2 cut(s) | 922, 962 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 416, 1346, 2416 |
| SpeI | ACTAGT | 2 cut(s) | 2621, 3299 |
| SphI | GCATGC | 2 cut(s) | 341, 1088 |
| SsiI | CCGC | 5 cut(s) | 76, 236, 680, 1386, 1828 |
| SspI | AATATT | 5 cut(s) | 1374, 2309, 2504, 2695, 3240 |
| SspMI | CTAG | 9 cut(s) | 201, 531, 1007, 1166, 1841, 2622, 2636, 2844, 3300 |
| SstI | GAGCTC | 1 cut(s) | 1074 |
| StyD4I | CCNGG | 8 cut(s) | 78, 341, 964, 1809, 1862, 2440, 2740, 2869 |
| StyI | CCWWGG | 1 cut(s) | 2066 |
| TaaI | ACNGT | 8 cut(s) | 180, 1100, 1151, 1382, 1441, 1973, 1990, 2971 |
| TaiI | ACGT | 2 cut(s) | 48, 861 |
| TaqI | TCGA | 7 cut(s) | 327, 519, 1054, 1093, 1480, 2733, 3261 |
| TaqII | GACCGA | 2 cut(s) | 832, 1026 |
| TatI | WGTACW | 2 cut(s) | 1649, 1702 |
| TscAI | CASTG | 8 cut(s) | 38, 484, 570, 1417, 1717, 2654, 2659, 3160 |
| TseFI | GTSAC | 4 cut(s) | 1866, 2141, 2714, 3155 |
| TseI | GCWGC | 5 cut(s) | 446, 535, 879, 2322, 2445 |
| Tsp45I | GTSAC | 4 cut(s) | 1866, 2141, 2714, 3155 |
| TspRI | CASTG | 8 cut(s) | 38, 484, 570, 1417, 1717, 2654, 2659, 3160 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1013, 3002 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2383 |
| Vha464I | CTTAAG | 3 cut(s) | 811, 2813, 2828 |
| VneI | GTGCAC | 2 cut(s) | 1022, 2791 |
| VpaK11BI | GGWCC | 2 cut(s) | 922, 962 |
| VspI | ATTAAT | 1 cut(s) | 2774 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 101 |
| XapI | RAATTY | 8 cut(s) | 704, 1245, 1260, 1954, 2007, 2271, 2674, 3121 |
| XceI | RCATGY | 2 cut(s) | 341, 1088 |
| XmiI | GTMKAC | 2 cut(s) | 519, 973 |
| XmnI | GAANNNNTTC | 6 cut(s) | 583, 795, 1245, 1260, 1500, 2554 |
| XspI | CTAG | 9 cut(s) | 201, 531, 1007, 1166, 1841, 2622, 2636, 2844, 3300 |
| Zsp2I | ATGCAT | 5 cut(s) | 373, 937, 958, 1470, 2978 |