Rroxscaffold_3G00237090

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
24643838 .. 24648009
4172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00237090.1

Sequence Viewer

Length: 3186 bp
ATGGGAACTCATGAAGCCTTCTCATCATCCTCCTCAAAACGCTGGAAATACGATGTGTTTTTGAGCTTCAGAGGTAAAGACACTCGCAACAACTTCACTGGCCACCTCTATTCAAGATTAAAAGAAGCCGGAATCAACGCCTTCATTGATGATAGCAAGTTTAGAAGAGGGTCAGTTATAACAGAGGAGCTGATGCAAGCAATTGAAGGGTCTAAGATCTCGGTTATCATTTTTTCAAGAGGCTATGGAGATTCCAGATGGTGTCTTCAGGAGCTGGTGGAGATCCTGGAGTGTAGAAAAAGACTGGGGCAAATGGTTTTGCCAATATTCTATGATGTTGATCCTACAGATGTCAGGAACCAGACTGGTGGTTTCGGAGAGGCATTCGAGCGGAAACATAAAGGTAAAGATAAAGATAAGGTACAGAAGTGGAGAAATGCTCTTACAGAAGCTGCTAATTTGTCTGGCTGGGATCTTAGAAAGACTTCCGATGGGTATGAAGCAACAGTTATTCAGAAAATTGTTGAACAGATTACTGGAGAGCTTCCCAGCACATATTTATTACAGGTAGCCCCACACCTAGTCGGAATAAATTCGTGCTTGCAAGATTTGATTTCTCGTTTATGTACTGAAGCAATAGAGGATGTTCGCATGATTGGAATATATGGGATGGGTGGAACAGGTAAAACAACAATTGCCAAAGCCATTTATAACAAAGTTTATCATGAATTTTGTGGTAAAGTTAGTTTCCTTGAAAATGTGAAGGAGACTACAAAGCAACAGAATGGTCTGGTTGGATTGCAAAATACACTTCTATTTGATATCTTGAAACAGAGCAAGCCAGAGGTAGGCATTGTTGATAGAGGGAAAGAAATAATACGTGAAAGACTTCGATGCATAAGAGTGCTTGTCATAATTGACGATATTGATGAAGAGGATCAACTGAATGCATTAGCTGGAAACTGTGATTGGTTTGGTCCTGGAAGTAGAATTATCATAACAACAAGAGATGCACATATGCTAAAGCGAGTGAGAAAGGATTCAATATATCATATTCAACCAATGCACAAAGTTGATGCTCTTGAGCTCTTTAGTTGGCATGCCTTTGGAAATAGTTATCCCAAGAAAGGATATCATGAACTTTCAGAAAGTGTAGTTGCTTGCTGTGGATGTTTACCCTTGGCTCTTGAAGTTATAGGTTCCTTTCTATTTGGCAAAGACATAACAGAGTGGAAATGTGAATTGGAAAAGTTGAAAAGAATTCCCGATGACAAAATTATGCAAAAGCTCAGATTAAGCTTTGACGGGCTAAGTTGTAGTCATAGAGAGAGGGATATATTCCTTGATATAGCCTGTTTCTTTATTGGAATGGACCGCAACTACGTCACACAAGTACTGGATGGATGTGACTTTTTTGCAGGAAGAGGAATCAGAGTCCTTCTTGATCGGTGCCTTGTAACTGTTAGTATGAGAAACAAGTTGATGATGCATGATTGCCTTCGGGACATGGGAAGAGAAATTGTACGTGAGTGTTACCTTGATGAGCCTGAAAGGCGTAGTAGATTGTGGCATCCAGAAGACGTAGAAGATGTACTGACAGAACACACGGGAAGTGAAAGAATTGAAGGACTCATTACATTAAATGTGGTAAATTCTGAAGAGAAGAGTTTCAGTACAGAGGCCTTTACAGGCATGAAGAGACTGAGATTACTCAAACTCAATTATGTAAAGTTAACTGGAGATTACAAATATATTTCGAAACGGTTGAGATGGCTTTGCTGGCATGGATTCCCTGAAGACGTCATACCAGACAACTTTGATCTACGAAAGCTAGTTGTTATGGACCTGCGGTATAGCAAACTCACGAACATTTGGGTGGATACTGATCAGTACTTGCTTGAGAAGTTGAAGATTGTTAATCTGAGTCATTCCCATGACCTGATTCAAACACCGAACTTTTCAAGGCTCCCAAATCTTGAGCAATTGATACTCAAAGACTGTAAGAGCTTATGTGAGATTCATCACTCCATTGGGAATCTTAAAAAACTTTCCTTGGTAAATCTTAAAGACTGCAAAATGCTGAAGTGTCTCCCAAGGAGTTTCTATAAGTTAAAATCTATTGAAACTCTTGATCTTTCGGGTTGTTCAACTGACTTGACAGAGAGCTTATTGGAGATGATACAATTGAGAACTTGTCTTGCAGAAGAAACTGCTCAAAGAAACGTATCAATACCATCTTCCGTAGTTCGATATGAAGGACCATCATATGCATTATTAAGAAGATTATATCTTATTGACTGCAAATTGACTGAGGATTCAATGGTTCGTAATCTTCGGAGTCTATCATTAGAACATCTAAATCTAGGGGGCAATGGTTTTCATAGCCTCTCAAATCTCAGTGGCCTTAACGTTGAGAGTCTGATATTGGATAATTGCACAAACCTTCGTGAAATCGGAGATTTACCCACAACTTTGGTTCGTTTGTCTGTGAATGGCTGCACTGCATTGGAGTCAATACCAAAATTTTCATATAATAAAAACTTGATATTCCAGATGGCGGGTTCCCACAAACTCATTGAATTTCCTGGCTTGGATATCTGGTTGAACTGTTTGTCATTACTTCCGGACTTGGATATCTGGTTGAACAGCTTGTCACTTGTTCAAATTGAAGGCCACTACAACTATATGCCTGCTTCTGTTAAAGCAGCGATCCTAAAGGCATGGCTTCGGATTGAAGGTGGTGGCCTTTCTTTTCGCAGAAATGAGATTCCTGATTGGTGCGATAATATCAATTTTAGGGGTGGTGCTGTGTCTTTTGAACTGCCATTAACTACAAGGGAAGTAAGATTGTGTGTGTGCTTTGTTTATTCTTCTTCTTTGGGCGAGTATGAATCTAATGATTGTAGCATTGTGGTTCTAAATCATACTAAGCGCTCTGGGTTTGTTGTCTACCCACGGCATGCCTATGCAAAGAGTAGAGGAGTAAAGTATCTCTGGCTGGGAAGTATAGCAAACCGTGAATTGGAAAATGGTGGCTTTGCTAGCGTTAGGGTAGTAATGGGAGATCATTTTCAGGTTCACCAAATAGGGGTTGAACTATCAGAGGCCACGCCATATTACACTCTCTTAGTAGATTGTTTTTCTATCCCATATGGGGAAGCATTAGAATATCTTCGAGATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1061

Amino Acids

121.07

Weight (kDa)

6.84

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 16 - 184 1.7e-55 TIR domain
TIR_2 PF13676 19 - 115 4.8e-16 TIR domain
NB-ARC PF00931 202 - 371 6.7e-17 NB-ARC domain
WHD_ROQ1 PF23282 442 - 510 1.3e-16 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36930 AT5G36930 AT5G36930 AT5G36930
fragaria_vesca FvH4_3g45361 FvH4_3g45380 FvH4_5g21061 FvH4_5g21062 FvH4_5g21063 FvH4_5g32050 FvH4_5g32970 FvH4_5g32990 FvH4_5g34190 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34211 FvH4_5g34240 FvH4_5g34250
malus_domestica MD00G1011700.v1.1 MD00G1026100.v1.1 MD00G1026500.v1.1 MD00G1027000.v1.1 MD00G1027100.v1.1 MD00G1027700.v1.1 MD00G1027800.v1.1 MD00G1028000.v1.1 MD00G1220000.v1.1 MD02G1024400.v1.1 MD02G1024800.v1.1 MD02G1026000.v1.1 MD02G1026100.v1.1 MD02G1031800.v1.1 MD02G1038500.v1.1 MD02G1038700.v1.1 MD02G1039200.v1.1 MD02G1040600.v1.1 MD02G1040900.v1.1 MD02G1041200.v1.1 MD02G1041300.v1.1 MD02G1041700.v1.1 MD02G1042000.v1.1 MD02G1043800.v1.1 MD02G1043900.v1.1 MD02G1044300.v1.1 MD02G1045200.v1.1 MD02G1045300.v1.1 MD02G1051200.v1.1 MD02G1052200.v1.1 MD02G1052800.v1.1 MD02G1053100.v1.1 MD02G1053600.v1.1 MD02G1055500.v1.1 MD02G1063300.v1.1 MD02G1063400.v1.1 MD02G1063800.v1.1 MD02G1306500.v1.1 MD02G1306600.v1.1 MD02G1306700.v1.1 MD02G1306900.v1.1 MD02G1307200.v1.1 MD04G1011700.v1.1 MD05G1315400.v1.1 MD05G1316000.v1.1 MD05G1316700.v1.1 MD05G1317000.v1.1 MD05G1317300.v1.1 MD05G1317600.v1.1 MD05G1317700.v1.1 MD07G1102800.v1.1 MD07G1238200.v1.1 MD08G1175900.v1.1 MD08G1203600.v1.1 MD09G1024200.v1.1 MD09G1039600.v1.1 MD09G1044800.v1.1 MD09G1045100.v1.1 MD10G1038700.v1.1 MD10G1039000.v1.1 MD10G1039200.v1.1 MD10G1040000.v1.1 MD10G1040200.v1.1 MD10G1040600.v1.1 MD10G1040800.v1.1 MD10G1297300.v1.1 MD12G1247500.v1.1 MD12G1247900.v1.1 MD12G1248300.v1.1 MD12G1248800.v1.1 MD15G1103700.v1.1 MD15G1103800.v1.1 MD15G1104000.v1.1 MD15G1179600.v1.1 MD15G1182500.v1.1 MD16G1068200.v1.1 MD16G1068300.v1.1 MD17G1024600.v1.1 MD17G1024700.v1.1 MD17G1025000.v1.1 MD17G1025900.v1.1
prunus_persica Prupe.1G539800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G557100_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557300_v2.0.a1
pyrus_communis pycom02g02080 pycom02g02090 pycom02g02110 pycom02g03220 pycom02g03260 pycom02g03370 pycom02g03390 pycom02g03410 pycom02g03420 pycom02g03450 pycom02g03500 pycom02g03730 pycom02g03770 pycom02g04400 pycom02g04410 pycom02g04430 pycom02g04450 pycom02g04460 pycom02g04490 pycom02g05200 pycom02g25710 pycom02g25750 pycom02g25790 pycom02g25810 pycom02g25830 pycom04g00920 pycom04g00930 pycom04g00940 pycom05g29300 pycom05g29310 pycom05g29380 pycom05g29410 pycom07g06310 pycom07g21420 pycom08g15070 pycom08g17540 pycom08g17560 pycom08g17570 pycom10g02670 pycom10g02680 pycom10g02700 pycom10g02770 pycom10g02790 pycom10g02800 pycom10g02810 pycom10g25020 pycom10g25030 pycom10g25050 pycom10g25080 pycom111g01990 pycom111g02000 pycom111g02030 pycom111g02040 pycom111g02050 pycom111g02060 pycom12g22710 pycom12g22720 pycom12g22730 pycom12g22740 pycom12g22750 pycom12g22770 pycom12g22780 pycom12g22790 pycom12g22800 pycom12g22810 pycom12g22830 pycom12g22840 pycom12g22860 pycom15g09440 pycom15g09480 pycom15g16120 pycom15g32380 pycom16g05970 pycom17g02100
rosa_chinensis RchiOBHm_Chr2g0144661 RchiOBHm_Chr4g0407491 RchiOBHm_Chr4g0407501 RchiOBHm_Chr4g0412381 RchiOBHm_Chr7g0208191 RchiOBHm_Chr7g0208201 RchiOBHm_Chr7g0208211 RchiOBHm_Chr7g0208221 RchiOBHm_Chr7g0228071 RchiOBHm_Chr7g0228121 RchiOBHm_Chr7g0230971 RchiOBHm_Chr7g0230981 RchiOBHm_Chr7g0233901 RchiOBHm_Chr7g0233951 RchiOBHm_Chr7g0233961 RchiOBHm_Chr7g0233991 RchiOBHm_Chr7g0234021 RchiOBHm_Chr7g0234151 RchiOBHm_Chr7g0234161 RchiOBHm_Chr7g0234241 RchiOBHm_Chr7g0234501 RchiOBHm_Chr7g0234641 RchiOBHm_Chr7g0234771 RchiOBHm_Chr7g0234781 RchiOBHm_Chr7g0234991 RchiOBHm_Chr7g0241291 RchiOBHm_Chr7g0241301
rosa_laevigata RLG00000001186 RLG00000001187 RLG00000001212 RLG00000001226 RLG00000001233 RLG00000001590 RLG00000003242 RLG00000003243 RLG00000003249 RLG00000008688 RLG00000008690
rosa_multiflora Rmu_co7966574.1_g000001 Rmu_co8120830.1_g000001 Rmu_co8142226.1_g000001 Rmu_co8293083.1_g000001 Rmu_co8351227.1_g000001 Rmu_co8380159.1_g000001 Rmu_co8456505.1_g000001 Rmu_sc0000676.1_g000025 Rmu_sc0000706.1_g000018 Rmu_sc0000706.1_g000040 Rmu_sc0000740.1_g000029 Rmu_sc0000740.1_g000032 Rmu_sc0000740.1_g000037 Rmu_sc0000740.1_g000040 Rmu_sc0000762.1_g000003 Rmu_sc0000762.1_g000019 Rmu_sc0000762.1_g000034 Rmu_sc0000762.1_g000069 Rmu_sc0000892.1_g000001 Rmu_sc0000945.1_g000040 Rmu_sc0001913.1_g000037 Rmu_sc0001913.1_g000041 Rmu_sc0001913.1_g000049 Rmu_sc0002775.1_g000017 Rmu_sc0002775.1_g000018 Rmu_sc0002775.1_g000020 Rmu_sc0002775.1_g000021 Rmu_sc0002775.1_g000022 Rmu_sc0002775.1_g000025 Rmu_sc0002775.1_g000026 Rmu_sc0002775.1_g000028 Rmu_sc0002775.1_g000030 Rmu_sc0004858.1_g000002 Rmu_sc0004864.1_g000022 Rmu_sc0005038.1_g000023 Rmu_sc0005840.1_g000014 Rmu_sc0006724.1_g000003 Rmu_sc0006824.1_g000005 Rmu_sc0007869.1_g000003 Rmu_sc0007869.1_g000005 Rmu_sc0007869.1_g000008 Rmu_sc0008646.1_g000007 Rmu_sc0009637.1_g000009 Rmu_sc0010500.1_g000002 Rmu_sc0010500.1_g000012 Rmu_sc0012403.1_g000025 Rmu_sc0013768.1_g000025 Rmu_sc0015625.1_g000001 Rmu_sc0019715.1_g000001 Rmu_sc0021133.1_g000002 Rmu_sc0021904.1_g000001 Rmu_sc0021904.1_g000003 Rmu_sc0021904.1_g000004 Rmu_sc0022054.1_g000001 Rmu_sc0026025.1_g000001 Rmu_sc0036828.1_g000002 Rmu_sc0041808.1_g000001 Rmu_ssc0000012.1_g000001
rosa_roxburghii Rroxscaffold_3G00226370 Rroxscaffold_3G00226860 Rroxscaffold_3G00226900 Rroxscaffold_3G00226930 Rroxscaffold_3G00226940 Rroxscaffold_3G00226970 Rroxscaffold_3G00226980 Rroxscaffold_3G00231530 Rroxscaffold_3G00237090 Rroxscaffold_3G00250760 Rroxscaffold_3G00250800
rosa_rugosa Rorug04G0082300 Rorug07G0101800 Rorug07G0102000 Rorug07G0102100 Rorug07G0221200 Rorug07G0245700 Rorug07G0245700 Rorug07G0245700 Rorug07G0263900 Rorug07G0264000 Rorug07G0264000 Rorug07G0264500 Rorug07G0282900 Rorug07G0282900 Rorug07G0283100 Rorug07G0283200.1 Rorug07G0283300 Rorug07G0283900 Rorug07G0284000 Rorug07G0284100 Rorug07G0284300 Rorug07G0284400 Rorug07G0284500 Rorug07G0285000 Rorug07G0285200 Rorug07G0285300 Rorug07G0285500 Rorug07G0286800 Rorug07G0286900 Rorug07G0287100 Rorug07G0287200
rosa_samantha Rh7AG236100 Rh7AG236200 Rh7AG236300 Rh7AG440000 Rh7AG440100 Rh7BG411900 Rh7BG412000 Rh7BG412600 Rh7CG251300 Rh7CG417700 Rh7CG460100 Rh7DG242100 Rh7DG242200 Rh7DG242300 Rh7DG429300
rosa_wichuraiana Rw0G005070 Rw0G010780 Rw0G012530 Rw7G020110 Rw7G020160 Rw7G020170 Rw7G033210 Rw7G033230 Rw7G033250 Rw7G034540 Rw7G035150 Rw7G036190 Rw7G036210 Rw7G036260 Rw7G036270 Rw7G036290 Rw7G036300 Rw7G036310 Rw7G036350 Rw7G036360 Rw7G036440 Rw7G036510 Rw7G036530 Rw7G036570 Rw7G036590 Rw7G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 179, 711
AatII GACGTC 1 cut(s) 1803
Acc36I ACCTGC 1 cut(s) 1854
AccB1I GGYRCC 1 cut(s) 1449
AccBSI CCGCTC 1 cut(s) 391
AccI GTMKAC 1 cut(s) 2949
AccIII TCCGGA 1 cut(s) 2623
AciI CCGC 4 cut(s) 391, 1375, 1849, 2558
AclI AACGTT 1 cut(s) 2409
AclWI GGATC 5 cut(s) 277, 335, 480, 945, 2704
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 6 cut(s) 592, 728, 1260, 1651, 2522, 2579
AcuI CTGAAG 6 cut(s) 52, 251, 651, 1677, 1815, 2102
AcyI GRCGYC 1 cut(s) 1800
AfaI GTAC 7 cut(s) 423, 628, 1395, 1524, 1593, 1675, 1892
AfeI AGCGCT 1 cut(s) 2933
AfiI CCNNNNNNNGG 6 cut(s) 848, 1127, 2557, 3022, 3088, 3154
AjnI CCWGG 3 cut(s) 285, 979, 2584
AjuI GAANNNNNNNTTGG 4 cut(s) 952, 984, 1226, 1258
Alw21I GWGCWC 1 cut(s) 1089
Alw26I GTCTC 3 cut(s) 761, 1693, 2093
AlwI GGATC 5 cut(s) 277, 335, 480, 945, 2704
AlwNI CAGNNNCTG 2 cut(s) 274, 452
Aor13HI TCCGGA 1 cut(s) 2623
Aor51HI AGCGCT 1 cut(s) 2933
AoxI GGCC 6 cut(s) 100, 1680, 2401, 2671, 2743, 3105
ApeKI GCWGC 3 cut(s) 452, 2496, 2705
ApoI RAATTY 6 cut(s) 592, 728, 1260, 1651, 2522, 2579
Asp700I GAANNNNTTC 6 cut(s) 484, 592, 888, 1039, 1667, 3171
AspLEI GCGC 1 cut(s) 2934
AspS9I GGNCC 4 cut(s) 977, 1372, 1843, 2258
AsuHPI GGTGA 1 cut(s) 3071
AsuII TTCGAA 1 cut(s) 1757
AsuNHI GCTAGC 1 cut(s) 3041
AvaII GGWCC 4 cut(s) 977, 1372, 1843, 2258
BaeI ACNNNNGTAYC 2 cut(s) 413, 446
BalI TGGCCA 1 cut(s) 102
BanI GGYRCC 1 cut(s) 1449
BanII GRGCYC 1 cut(s) 1089
BarI GAAGNNNNNNTAC 2 cut(s) 1788, 1820
BbsI GAAGAC 3 cut(s) 257, 1584, 1803
Bbv12I GWGCWC 1 cut(s) 1089
BbvI GCAGC 3 cut(s) 439, 2483, 2717
BccI CCATC 8 cut(s) 252, 485, 664, 1394, 1764, 2242, 2269, 2548
BceAI ACGGC 1 cut(s) 2972
BciT130I CCWGG 3 cut(s) 287, 981, 2586
BciVI GTATCC 1 cut(s) 1873
BclI TGATCA 1 cut(s) 1885
BcoDI GTCTC 3 cut(s) 761, 1693, 2093
BfaI CTAG 4 cut(s) 581, 1832, 2363, 3042
BfmI CTRYAG 1 cut(s) 345
BfoI RGCGCY 1 cut(s) 2935
BfuAI ACCTGC 1 cut(s) 1854
BfuI GTATCC 1 cut(s) 1873
BglI GCCNNNNNGGC 1 cut(s) 1552
BglII AGATCT 1 cut(s) 216
BisI GCNGC 3 cut(s) 453, 2497, 2706
BlsI GCNGC 3 cut(s) 454, 2498, 2707
BmcAI AGTACT 2 cut(s) 1395, 1892
Bme1390I CCNGG 3 cut(s) 287, 981, 2586
Bme18I GGWCC 4 cut(s) 977, 1372, 1843, 2258
BmgT120I GGNCC 4 cut(s) 977, 1372, 1843, 2258
BmiI GGNNCC 5 cut(s) 359, 1201, 1451, 1967, 2563
BmrFI CCNGG 3 cut(s) 287, 981, 2586
BmrI ACTGGG 1 cut(s) 314
BmsI GCATC 6 cut(s) 183, 884, 1000, 1066, 1476, 1579
BmtI GCTAGC 1 cut(s) 3045
BmuI ACTGGG 1 cut(s) 314
BpiI GAAGAC 3 cut(s) 257, 1584, 1803
BplI GAGNNNNNCTC 2 cut(s) 424, 456
BpmI CTGGAG 3 cut(s) 308, 558, 1758
Bpu14I TTCGAA 1 cut(s) 1757
BpuEI CTTGAG 3 cut(s) 1103, 1919, 1997
BsaAI YACGTR 2 cut(s) 881, 1526
BsaBI GATNNNNATC 2 cut(s) 339, 1884
BsaHI GRCGYC 1 cut(s) 1800
BsaJI CCNNGG 4 cut(s) 1179, 2052, 2093, 2954
BsaWI WCCGGW 1 cut(s) 2623
Bsc4I CCNNNNNNNGG 6 cut(s) 848, 1127, 2557, 3022, 3088, 3154
Bse1I ACTGG 6 cut(s) 103, 309, 370, 541, 1401, 1741
Bse3DI GCAATG 1 cut(s) 2377
Bse8I GATNNNNATC 2 cut(s) 339, 1884
BseAI TCCGGA 1 cut(s) 2623
BseBI CCWGG 3 cut(s) 287, 981, 2586
BseDI CCNNGG 4 cut(s) 1179, 2052, 2093, 2954
BseGI GGATG 7 cut(s) 26, 649, 675, 1175, 1405, 1409, 1570
BseJI GATNNNNATC 2 cut(s) 339, 1884
BseLI CCNNNNNNNGG 6 cut(s) 848, 1127, 2557, 3022, 3088, 3154
BseMI GCAATG 1 cut(s) 2377
BseMII CTCAG 5 cut(s) 1303, 1694, 1913, 2301, 2410
BseNI ACTGG 6 cut(s) 103, 309, 370, 541, 1401, 1741
BseRI GAGGAG 3 cut(s) 22, 200, 2994
BseXI GCAGC 3 cut(s) 439, 2483, 2717
BseYI CCCAGC 3 cut(s) 468, 548, 2998
BsgI GTGCAG 1 cut(s) 2482
BshFI GGCC 6 cut(s) 102, 1682, 2403, 2673, 2745, 3107
BshNI GGYRCC 1 cut(s) 1449
BsiHKAI GWGCWC 1 cut(s) 1089
BsiSI CCGG 2 cut(s) 129, 2624
BslFI GGGAC 1 cut(s) 1517
BslI CCNNNNNNNGG 6 cut(s) 848, 1127, 2557, 3022, 3088, 3154
BsmAI GTCTC 3 cut(s) 761, 1693, 2093
BsmFI GGGAC 1 cut(s) 1517
BsmI GAATGC 2 cut(s) 383, 952
BsnI GGCC 6 cut(s) 102, 1682, 2403, 2673, 2745, 3107
Bsp119I TTCGAA 1 cut(s) 1757
Bsp1286I GDGCHC 1 cut(s) 1089
Bsp13I TCCGGA 1 cut(s) 2623
BspACI CCGC 4 cut(s) 391, 1375, 1849, 2558
BspANI GGCC 6 cut(s) 102, 1682, 2403, 2673, 2745, 3107
BspCNI CTCAG 5 cut(s) 1302, 1695, 1914, 2302, 2409
BspEI TCCGGA 1 cut(s) 2623
BspHI TCATGA 3 cut(s) 10, 724, 1135
BspLI GGNNCC 5 cut(s) 359, 1201, 1451, 1967, 2563
BspMI ACCTGC 1 cut(s) 1854
BspOI GCTAGC 1 cut(s) 3045
BspPI GGATC 5 cut(s) 277, 335, 480, 945, 2704
BspT104I TTCGAA 1 cut(s) 1757
BspT107I GGYRCC 1 cut(s) 1449
BsrBI CCGCTC 1 cut(s) 391
BsrDI GCAATG 1 cut(s) 2377
BsrI ACTGG 6 cut(s) 103, 309, 370, 541, 1401, 1741
BssECI CCNNGG 4 cut(s) 1179, 2052, 2093, 2954
BssNI GRCGYC 1 cut(s) 1800
BssT1I CCWWGG 3 cut(s) 1179, 2052, 2093
Bst2UI CCWGG 3 cut(s) 287, 981, 2586
Bst4CI ACNGT 7 cut(s) 508, 965, 1462, 1764, 2000, 2609, 3017
Bst6I CTCTTC 7 cut(s) 160, 927, 1417, 1507, 1653, 1658, 1691
BstACI GRCGYC 1 cut(s) 1800
BstBAI YACGTR 2 cut(s) 881, 1526
BstBI TTCGAA 1 cut(s) 1757
BstC8I GCNNGC 9 cut(s) 198, 602, 839, 1101, 1162, 1781, 2691, 2961, 3043
BstDSI CCRYGG 1 cut(s) 2954
BstF5I GGATG 7 cut(s) 26, 649, 675, 1175, 1405, 1409, 1570
BstH2I RGCGCY 1 cut(s) 2935
BstHHI GCGC 1 cut(s) 2934
BstMAI GTCTC 3 cut(s) 761, 1693, 2093
BstMWI GCNNNNNNNGC 3 cut(s) 1552, 1780, 3042
BstNI CCWGG 3 cut(s) 287, 981, 2586
BstNSI RCATGY 2 cut(s) 1103, 2963
BstSCI CCNGG 3 cut(s) 285, 979, 2584
BstSFI CTRYAG 1 cut(s) 345
BstV1I GCAGC 3 cut(s) 439, 2483, 2717
BstV2I GAAGAC 3 cut(s) 257, 1584, 1803
BstX2I RGATCY 3 cut(s) 216, 282, 472
BstXI CCANNNNNNTGG 2 cut(s) 368, 2473
BstYI RGATCY 3 cut(s) 216, 282, 472
BsuI GTATCC 1 cut(s) 1873
BsuRI GGCC 6 cut(s) 102, 1682, 2403, 2673, 2745, 3107
BtgI CCRYGG 1 cut(s) 2954
BtsCI GGATG 7 cut(s) 26, 649, 675, 1175, 1405, 1409, 1570
BtsI GCAGTG 1 cut(s) 2499
BtsIMutI CAGTG 3 cut(s) 96, 2404, 2499
BveI ACCTGC 1 cut(s) 1854
Cac8I GCNNGC 9 cut(s) 198, 602, 839, 1101, 1162, 1781, 2691, 2961, 3043
CaiI CAGNNNCTG 2 cut(s) 274, 452
CciI TCATGA 3 cut(s) 10, 724, 1135
CfoI GCGC 1 cut(s) 2934
Cfr13I GGNCC 4 cut(s) 977, 1372, 1843, 2258
Csp6I GTAC 7 cut(s) 422, 627, 1394, 1523, 1592, 1674, 1891
CviQI GTAC 7 cut(s) 422, 627, 1394, 1523, 1592, 1674, 1891
EaeI YGGCCR 1 cut(s) 100
Eam1104I CTCTTC 7 cut(s) 160, 927, 1417, 1507, 1653, 1658, 1691
EarI CTCTTC 7 cut(s) 160, 927, 1417, 1507, 1653, 1658, 1691
Ecl136II GAGCTC 1 cut(s) 1087
Eco130I CCWWGG 3 cut(s) 1179, 2052, 2093
Eco147I AGGCCT 1 cut(s) 1682
Eco24I GRGCYC 1 cut(s) 1089
Eco32I GATATC 4 cut(s) 823, 1133, 2596, 2635
Eco47I GGWCC 4 cut(s) 977, 1372, 1843, 2258
Eco47III AGCGCT 1 cut(s) 2933
Eco53kI GAGCTC 1 cut(s) 1087
Eco57I CTGAAG 6 cut(s) 52, 251, 651, 1677, 1815, 2102
EcoICRI GAGCTC 1 cut(s) 1087
EcoRI GAATTC 1 cut(s) 1260
EcoRII CCWGG 3 cut(s) 285, 979, 2584
EcoRV GATATC 4 cut(s) 823, 1133, 2596, 2635
EcoT14I CCWWGG 3 cut(s) 1179, 2052, 2093
EcoT22I ATGCAT 4 cut(s) 899, 952, 1491, 2272
EcoT38I GRGCYC 1 cut(s) 1089
ErhI CCWWGG 3 cut(s) 1179, 2052, 2093
FaqI GGGAC 1 cut(s) 1517
FauI CCCGC 1 cut(s) 2551
FauNDI CATATG 3 cut(s) 1017, 2266, 3151
FbaI TGATCA 1 cut(s) 1885
FblI GTMKAC 1 cut(s) 2949
Fnu4HI GCNGC 3 cut(s) 453, 2497, 2706
FokI GGATG 7 cut(s) 13, 656, 682, 1182, 1412, 1416, 1557
FriOI GRGCYC 1 cut(s) 1089
Fsp4HI GCNGC 3 cut(s) 453, 2497, 2706
FspBI CTAG 4 cut(s) 581, 1832, 2363, 3042
GlaI GCGC 1 cut(s) 2933
GluI GCNGC 3 cut(s) 453, 2497, 2706
GsaI CCCAGC 3 cut(s) 472, 552, 3002
GsuI CTGGAG 3 cut(s) 308, 558, 1758
HaeII RGCGCY 1 cut(s) 2935
HaeIII GGCC 6 cut(s) 102, 1682, 2403, 2673, 2745, 3107
HapII CCGG 2 cut(s) 129, 2624
HhaI GCGC 1 cut(s) 2934
Hin1I GRCGYC 1 cut(s) 1800
Hin6I GCGC 1 cut(s) 2932
HinP1I GCGC 1 cut(s) 2932
HincII GTYRAC 1 cut(s) 1734
HindII GTYRAC 1 cut(s) 1734
HindIII AAGCTT 1 cut(s) 1297
HpaI GTTAAC 1 cut(s) 1734
HpaII CCGG 2 cut(s) 129, 2624
HphI GGTGA 1 cut(s) 3071
Hpy166II GTNNAC 4 cut(s) 1175, 1734, 2950, 3079
Hpy8I GTNNAC 4 cut(s) 1175, 1734, 2950, 3079
HpyCH4III ACNGT 7 cut(s) 508, 965, 1462, 1764, 2000, 2609, 3017
HpyCH4IV ACGT 7 cut(s) 880, 1383, 1525, 1581, 1800, 2223, 2409
HpyF10VI GCNNNNNNNGC 3 cut(s) 1552, 1780, 3042
HpySE526I ACGT 7 cut(s) 880, 1383, 1525, 1581, 1800, 2223, 2409
Hsp92I GRCGYC 1 cut(s) 1800
HspAI GCGC 1 cut(s) 2932
Kpn2I TCCGGA 1 cut(s) 2623
Ksp22I TGATCA 1 cut(s) 1885
KspAI GTTAAC 1 cut(s) 1734
LmnI GCTCC 3 cut(s) 187, 271, 1971
Lsp1109I GCAGC 3 cut(s) 439, 2483, 2717
LweI GCATC 6 cut(s) 183, 884, 1000, 1066, 1476, 1579
MaeI CTAG 4 cut(s) 581, 1832, 2363, 3042
MaeII ACGT 7 cut(s) 880, 1383, 1525, 1581, 1800, 2223, 2409
MaeIII GTNAC 5 cut(s) 1384, 1406, 1456, 1532, 2652
MbiI CCGCTC 1 cut(s) 391
MfeI CAATTG 4 cut(s) 201, 693, 1982, 2183
MflI RGATCY 3 cut(s) 216, 282, 472
MhlI GDGCHC 1 cut(s) 1089
MlsI TGGCCA 1 cut(s) 102
MluNI TGGCCA 1 cut(s) 102
MlyI GAGTC 6 cut(s) 1443, 1623, 1933, 2347, 2425, 2519
MmeI TCCRAC 2 cut(s) 565, 775
Mox20I TGGCCA 1 cut(s) 102
Mph1103I ATGCAT 4 cut(s) 899, 952, 1491, 2272
MroI TCCGGA 1 cut(s) 2623
MroXI GAANNNNTTC 6 cut(s) 484, 592, 888, 1039, 1667, 3171
MscI TGGCCA 1 cut(s) 102
MslI CAYNNNNRTG 4 cut(s) 902, 1874, 1932, 2964
Msp20I TGGCCA 1 cut(s) 102
MspI CCGG 2 cut(s) 129, 2624
MspR9I CCNGG 3 cut(s) 287, 981, 2586
MunI CAATTG 4 cut(s) 201, 693, 1982, 2183
Mva1269I GAATGC 2 cut(s) 383, 952
MvaI CCWGG 3 cut(s) 287, 981, 2586
MwoI GCNNNNNNNGC 3 cut(s) 1552, 1780, 3042
NdeI CATATG 3 cut(s) 1017, 2266, 3151
NheI GCTAGC 1 cut(s) 3041
NlaIV GGNNCC 5 cut(s) 359, 1201, 1451, 1967, 2563
NmuCI GTSAC 3 cut(s) 1384, 1406, 2652
NsiI ATGCAT 4 cut(s) 899, 952, 1491, 2272
NspI RCATGY 2 cut(s) 1103, 2963
NspV TTCGAA 1 cut(s) 1757
PaeI GCATGC 2 cut(s) 1103, 2963
PagI TCATGA 3 cut(s) 10, 724, 1135
PceI AGGCCT 1 cut(s) 1682
PctI GAATGC 2 cut(s) 383, 952
PdmI GAANNNNTTC 6 cut(s) 484, 592, 888, 1039, 1667, 3171
PfoI TCCNGGA 2 cut(s) 285, 979
PkrI GCNGC 3 cut(s) 454, 2498, 2707
PleI GAGTC 6 cut(s) 1442, 1623, 1932, 2346, 2424, 2518
PpsI GAGTC 6 cut(s) 1442, 1623, 1932, 2346, 2424, 2518
Ppu21I YACGTR 2 cut(s) 881, 1526
PsiI TTATAA 2 cut(s) 179, 711
Psp124BI GAGCTC 1 cut(s) 1089
Psp1406I AACGTT 1 cut(s) 2409
Psp6I CCWGG 3 cut(s) 285, 979, 2584
PspFI CCCAGC 3 cut(s) 468, 548, 2998
PspGI CCWGG 3 cut(s) 285, 979, 2584
PspN4I GGNNCC 5 cut(s) 359, 1201, 1451, 1967, 2563
PspPI GGNCC 4 cut(s) 977, 1372, 1843, 2258
PstNI CAGNNNCTG 2 cut(s) 274, 452
PsuI RGATCY 3 cut(s) 216, 282, 472
RsaI GTAC 7 cut(s) 423, 628, 1395, 1524, 1593, 1675, 1892
RsaNI GTAC 7 cut(s) 422, 627, 1394, 1523, 1592, 1674, 1891
RseI CAYNNNNRTG 4 cut(s) 902, 1874, 1932, 2964
SacI GAGCTC 1 cut(s) 1089
SatI GCNGC 3 cut(s) 453, 2497, 2706
Sau96I GGNCC 4 cut(s) 977, 1372, 1843, 2258
ScaI AGTACT 2 cut(s) 1395, 1892
SchI GAGTC 6 cut(s) 1443, 1623, 1933, 2347, 2425, 2519
ScrFI CCNGG 3 cut(s) 287, 981, 2586
SduI GDGCHC 1 cut(s) 1089
SfaNI GCATC 6 cut(s) 183, 884, 1000, 1066, 1476, 1579
SfcI CTRYAG 1 cut(s) 345
SfuI TTCGAA 1 cut(s) 1757
SinI GGWCC 4 cut(s) 977, 1372, 1843, 2258
SmiMI CAYNNNNRTG 4 cut(s) 902, 1874, 1932, 2964
SmlI CTYRAG 3 cut(s) 1082, 1898, 1976
SmoI CTYRAG 3 cut(s) 1082, 1898, 1976
SphI GCATGC 2 cut(s) 1103, 2963
SseBI AGGCCT 1 cut(s) 1682
SsiI CCGC 4 cut(s) 391, 1375, 1849, 2558
SspI AATATT 1 cut(s) 327
SspMI CTAG 4 cut(s) 581, 1832, 2363, 3042
SstI GAGCTC 1 cut(s) 1089
StuI AGGCCT 1 cut(s) 1682
StyD4I CCNGG 3 cut(s) 285, 979, 2584
StyI CCWWGG 3 cut(s) 1179, 2052, 2093
TaaI ACNGT 7 cut(s) 508, 965, 1462, 1764, 2000, 2609, 3017
TaiI ACGT 7 cut(s) 883, 1386, 1528, 1584, 1803, 2226, 2412
TaqI TCGA 5 cut(s) 387, 892, 1757, 2248, 3175
TatI WGTACW 5 cut(s) 626, 1393, 1591, 1673, 1890
TscAI CASTG 3 cut(s) 103, 2404, 2506
TseFI GTSAC 3 cut(s) 1384, 1406, 2652
TseI GCWGC 3 cut(s) 452, 2496, 2705
Tsp45I GTSAC 3 cut(s) 1384, 1406, 2652
TspGWI ACGGA 1 cut(s) 2230
TspRI CASTG 3 cut(s) 103, 2404, 2506
VpaK11BI GGWCC 4 cut(s) 977, 1372, 1843, 2258
XapI RAATTY 6 cut(s) 592, 728, 1260, 1651, 2522, 2579
XceI RCATGY 2 cut(s) 1103, 2963
XmiI GTMKAC 1 cut(s) 2949
XmnI GAANNNNTTC 6 cut(s) 484, 592, 888, 1039, 1667, 3171
XspI CTAG 4 cut(s) 581, 1832, 2363, 3042
ZraI GACGTC 1 cut(s) 1801
ZrmI AGTACT 2 cut(s) 1395, 1892
Zsp2I ATGCAT 4 cut(s) 899, 952, 1491, 2272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.