TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 18 - 200 | 1.6e-48 | TIR domain |
| TIR_2 | PF13676 | 21 - 117 | 1.8e-18 | TIR domain |
| NB-ARC | PF00931 | 214 - 380 | 3.5e-16 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 449 - 518 | 5.2e-16 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 754 - 853 | 1.2e-07 | Leucine-rich repeat region |
| LRR_4 | PF12799 | 781 - 822 | 4e-06 | Leucine Rich repeats (2 copies) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 753, 1899 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2225 |
| Acc65I | GGTACC | 1 cut(s) | 138 |
| AccB1I | GGYRCC | 1 cut(s) | 138 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 48 |
| AccI | GTMKAC | 1 cut(s) | 1051 |
| AccII | CGCG | 4 cut(s) | 91, 119, 642, 804 |
| AciI | CCGC | 3 cut(s) | 119, 254, 1428 |
| AclWI | GGATC | 4 cut(s) | 230, 685, 1234, 2364 |
| AcoI | YGGCCR | 3 cut(s) | 505, 612, 1527 |
| AcsI | RAATTY | 7 cut(s) | 496, 702, 759, 776, 1920, 2470, 2477 |
| AcuI | CTGAAG | 2 cut(s) | 58, 1653 |
| AfaI | GTAC | 6 cut(s) | 140, 1740, 1868, 1881, 2155, 2449 |
| AfeI | AGCGCT | 1 cut(s) | 1212 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 48, 118, 1154, 1597, 2039 |
| AflIII | ACRYGT | 3 cut(s) | 319, 607, 640 |
| AhlI | ACTAGT | 1 cut(s) | 1846 |
| AjnI | CCWGG | 2 cut(s) | 1012, 2587 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 985, 1017 |
| Alw26I | GTCTC | 1 cut(s) | 2126 |
| AlwI | GGATC | 4 cut(s) | 230, 685, 1234, 2364 |
| Aor51HI | AGCGCT | 1 cut(s) | 1212 |
| AoxI | GGCC | 5 cut(s) | 505, 612, 1527, 1599, 2389 |
| ApeKI | GCWGC | 2 cut(s) | 491, 737 |
| ApoI | RAATTY | 7 cut(s) | 496, 702, 759, 776, 1920, 2470, 2477 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 390, 634 |
| Asp718I | GGTACC | 1 cut(s) | 138 |
| AspLEI | GCGC | 2 cut(s) | 93, 1213 |
| AspS9I | GGNCC | 1 cut(s) | 1010 |
| AsuC2I | CCSGG | 2 cut(s) | 143, 2388 |
| AsuHPI | GGTGA | 8 cut(s) | 92, 295, 580, 1553, 1950, 2021, 2077, 2559 |
| AvaII | GGWCC | 1 cut(s) | 1010 |
| BalI | TGGCCA | 3 cut(s) | 507, 614, 1529 |
| BanI | GGYRCC | 1 cut(s) | 138 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1980, 2012 |
| BauI | CACGAG | 2 cut(s) | 103, 1038 |
| BbsI | GAAGAC | 1 cut(s) | 90 |
| BbvI | GCAGC | 2 cut(s) | 478, 724 |
| BccI | CCATC | 4 cut(s) | 519, 706, 1289, 2251 |
| BceAI | ACGGC | 1 cut(s) | 1586 |
| BciT130I | CCWGG | 2 cut(s) | 1014, 2589 |
| BclI | TGATCA | 3 cut(s) | 1150, 1558, 1834 |
| BcnI | CCSGG | 2 cut(s) | 143, 2388 |
| BcoDI | GTCTC | 1 cut(s) | 2126 |
| BcuI | ACTAGT | 1 cut(s) | 1846 |
| BfaI | CTAG | 3 cut(s) | 1208, 1847, 1907 |
| BfoI | RGCGCY | 1 cut(s) | 1214 |
| BisI | GCNGC | 3 cut(s) | 120, 492, 738 |
| BlsI | GCNGC | 3 cut(s) | 121, 493, 739 |
| Bme1390I | CCNGG | 4 cut(s) | 143, 1014, 2388, 2589 |
| Bme18I | GGWCC | 1 cut(s) | 1010 |
| BmgT120I | GGNCC | 1 cut(s) | 1010 |
| BmiI | GGNNCC | 3 cut(s) | 140, 1589, 2586 |
| BmrFI | CCNGG | 4 cut(s) | 143, 1014, 2388, 2589 |
| BmrI | ACTGGG | 1 cut(s) | 320 |
| BmsI | GCATC | 5 cut(s) | 796, 970, 1415, 1771, 2299 |
| BmuI | ACTGGG | 1 cut(s) | 320 |
| BpiI | GAAGAC | 1 cut(s) | 90 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 463, 495, 465, 497 |
| BpmI | CTGGAG | 1 cut(s) | 1292 |
| BpuEI | CTTGAG | 3 cut(s) | 88, 1130, 1633 |
| BpuMI | CCSGG | 2 cut(s) | 143, 2388 |
| Bsa29I | ATCGAT | 1 cut(s) | 1423 |
| BsaJI | CCNNGG | 2 cut(s) | 1770, 2102 |
| BsaWI | WCCGGW | 1 cut(s) | 1960 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 32 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 48, 118, 1154, 1597, 2039 |
| Bse118I | RCCGGY | 1 cut(s) | 590 |
| Bse1I | ACTGG | 5 cut(s) | 315, 981, 1275, 1881, 2004 |
| BseBI | CCWGG | 2 cut(s) | 1014, 2589 |
| BseCI | ATCGAT | 1 cut(s) | 1423 |
| BseDI | CCNNGG | 2 cut(s) | 1770, 2102 |
| BseGI | GGATG | 3 cut(s) | 717, 763, 985 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 48, 118, 1154, 1597, 2039 |
| BseMII | CTCAG | 6 cut(s) | 782, 1330, 1945, 2310, 2407, 2571 |
| BseNI | ACTGG | 5 cut(s) | 315, 981, 1275, 1881, 2004 |
| BseRI | GAGGAG | 2 cut(s) | 10, 22 |
| BseXI | GCAGC | 2 cut(s) | 478, 724 |
| BsgI | GTGCAG | 1 cut(s) | 319 |
| Bsh1236I | CGCG | 4 cut(s) | 91, 119, 642, 804 |
| BshFI | GGCC | 5 cut(s) | 507, 614, 1529, 1601, 2391 |
| BshNI | GGYRCC | 1 cut(s) | 138 |
| BshVI | ATCGAT | 1 cut(s) | 1423 |
| BsiSI | CCGG | 4 cut(s) | 142, 591, 1961, 2388 |
| BslFI | GGGAC | 2 cut(s) | 1961, 2380 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 48, 118, 1154, 1597, 2039 |
| BsmAI | GTCTC | 1 cut(s) | 2126 |
| BsmFI | GGGAC | 2 cut(s) | 1961, 2380 |
| BsmI | GAATGC | 1 cut(s) | 2084 |
| BsnI | GGCC | 5 cut(s) | 507, 614, 1529, 1601, 2391 |
| Bsp1407I | TGTACA | 1 cut(s) | 2153 |
| Bsp68I | TCGCGA | 1 cut(s) | 804 |
| BspACI | CCGC | 3 cut(s) | 119, 254, 1428 |
| BspANI | GGCC | 5 cut(s) | 507, 614, 1529, 1601, 2391 |
| BspCNI | CTCAG | 6 cut(s) | 781, 1329, 1944, 2311, 2406, 2572 |
| BspDI | ATCGAT | 1 cut(s) | 1423 |
| BspFNI | CGCG | 4 cut(s) | 91, 119, 642, 804 |
| BspHI | TCATGA | 2 cut(s) | 997, 2613 |
| BspLI | GGNNCC | 3 cut(s) | 140, 1589, 2586 |
| BspPI | GGATC | 4 cut(s) | 230, 685, 1234, 2364 |
| BspT107I | GGYRCC | 1 cut(s) | 138 |
| BsrFI | RCCGGY | 1 cut(s) | 590 |
| BsrGI | TGTACA | 1 cut(s) | 2153 |
| BsrI | ACTGG | 5 cut(s) | 315, 981, 1275, 1881, 2004 |
| BssAI | RCCGGY | 1 cut(s) | 590 |
| BssECI | CCNNGG | 2 cut(s) | 1770, 2102 |
| BssSI | CACGAG | 2 cut(s) | 103, 1038 |
| BssT1I | CCWWGG | 2 cut(s) | 1770, 2102 |
| Bst2BI | CACGAG | 2 cut(s) | 103, 1038 |
| Bst2UI | CCWGG | 2 cut(s) | 1014, 2589 |
| Bst4CI | ACNGT | 6 cut(s) | 198, 1193, 1483, 1592, 1685, 2227 |
| Bst6I | CTCTTC | 5 cut(s) | 28, 207, 1983, 2103, 2142 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1513, 2309 |
| BstAUI | TGTACA | 1 cut(s) | 2153 |
| BstC8I | GCNNGC | 1 cut(s) | 1128 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1152 |
| BstF5I | GGATG | 3 cut(s) | 717, 763, 985 |
| BstFNI | CGCG | 4 cut(s) | 91, 119, 642, 804 |
| BstH2I | RGCGCY | 1 cut(s) | 1214 |
| BstHHI | GCGC | 2 cut(s) | 93, 1213 |
| BstMAI | GTCTC | 1 cut(s) | 2126 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 14, 105, 128, 743, 1079, 1513, 2309 |
| BstNI | CCWGG | 2 cut(s) | 1014, 2589 |
| BstNSI | RCATGY | 5 cut(s) | 323, 359, 611, 1077, 1130 |
| BstSCI | CCNGG | 4 cut(s) | 141, 1012, 2386, 2587 |
| BstUI | CGCG | 4 cut(s) | 91, 119, 642, 804 |
| BstV1I | GCAGC | 2 cut(s) | 478, 724 |
| BstV2I | GAAGAC | 1 cut(s) | 90 |
| BstX2I | RGATCY | 3 cut(s) | 222, 1226, 2356 |
| BstYI | RGATCY | 3 cut(s) | 222, 1226, 2356 |
| Bsu15I | ATCGAT | 1 cut(s) | 1423 |
| BsuRI | GGCC | 5 cut(s) | 507, 614, 1529, 1601, 2391 |
| BsuTUI | ATCGAT | 1 cut(s) | 1423 |
| BtgZI | GCGATG | 1 cut(s) | 819 |
| BtsCI | GGATG | 3 cut(s) | 717, 763, 985 |
| BtsI | GCAGTG | 1 cut(s) | 473 |
| BtsIMutI | CAGTG | 3 cut(s) | 473, 2401, 2577 |
| BtuMI | TCGCGA | 1 cut(s) | 804 |
| Cac8I | GCNNGC | 1 cut(s) | 1128 |
| CciI | TCATGA | 2 cut(s) | 997, 2613 |
| CfoI | GCGC | 2 cut(s) | 93, 1213 |
| Cfr10I | RCCGGY | 1 cut(s) | 590 |
| Cfr13I | GGNCC | 1 cut(s) | 1010 |
| ClaI | ATCGAT | 1 cut(s) | 1423 |
| Csp6I | GTAC | 6 cut(s) | 139, 1739, 1867, 1880, 2154, 2448 |
| CviQI | GTAC | 6 cut(s) | 139, 1739, 1867, 1880, 2154, 2448 |
| DraI | TTTAAA | 2 cut(s) | 1135, 1809 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2225 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2225 |
| EaeI | YGGCCR | 3 cut(s) | 505, 612, 1527 |
| Eam1104I | CTCTTC | 5 cut(s) | 28, 207, 1983, 2103, 2142 |
| EarI | CTCTTC | 5 cut(s) | 28, 207, 1983, 2103, 2142 |
| Eco130I | CCWWGG | 2 cut(s) | 1770, 2102 |
| Eco32I | GATATC | 4 cut(s) | 662, 1160, 1289, 2196 |
| Eco47I | GGWCC | 1 cut(s) | 1010 |
| Eco47III | AGCGCT | 1 cut(s) | 1212 |
| Eco57I | CTGAAG | 2 cut(s) | 58, 1653 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1152 |
| EcoRI | GAATTC | 1 cut(s) | 776 |
| EcoRII | CCWGG | 2 cut(s) | 1012, 2587 |
| EcoRV | GATATC | 4 cut(s) | 662, 1160, 1289, 2196 |
| EcoT14I | CCWWGG | 2 cut(s) | 1770, 2102 |
| EcoT22I | ATGCAT | 1 cut(s) | 1509 |
| ErhI | CCWWGG | 2 cut(s) | 1770, 2102 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1092, 1124, 1146, 1178, 1648, 1680 |
| FaqI | GGGAC | 2 cut(s) | 1961, 2380 |
| FbaI | TGATCA | 3 cut(s) | 1150, 1558, 1834 |
| FblI | GTMKAC | 1 cut(s) | 1051 |
| Fnu4HI | GCNGC | 3 cut(s) | 120, 492, 738 |
| FokI | GGATG | 3 cut(s) | 724, 750, 992 |
| Fsp4HI | GCNGC | 3 cut(s) | 120, 492, 738 |
| FspBI | CTAG | 3 cut(s) | 1208, 1847, 1907 |
| GlaI | GCGC | 2 cut(s) | 92, 1212 |
| GluI | GCNGC | 3 cut(s) | 120, 492, 738 |
| GsuI | CTGGAG | 1 cut(s) | 1292 |
| HaeII | RGCGCY | 1 cut(s) | 1214 |
| HaeIII | GGCC | 5 cut(s) | 507, 614, 1529, 1601, 2391 |
| HapII | CCGG | 4 cut(s) | 142, 591, 1961, 2388 |
| HhaI | GCGC | 2 cut(s) | 93, 1213 |
| Hin6I | GCGC | 2 cut(s) | 91, 1211 |
| HinP1I | GCGC | 2 cut(s) | 91, 1211 |
| HincII | GTYRAC | 2 cut(s) | 1268, 2045 |
| HindII | GTYRAC | 2 cut(s) | 1268, 2045 |
| HindIII | AAGCTT | 2 cut(s) | 2087, 2408 |
| HpaII | CCGG | 4 cut(s) | 142, 591, 1961, 2388 |
| HphI | GGTGA | 8 cut(s) | 92, 295, 580, 1553, 1950, 2021, 2077, 2559 |
| Hpy99I | CGWCG | 2 cut(s) | 62, 930 |
| HpyAV | CCTTC | 7 cut(s) | 890, 1345, 1481, 1637, 2453, 2501, 2548 |
| HpyCH4III | ACNGT | 6 cut(s) | 198, 1193, 1483, 1592, 1685, 2227 |
| HpyCH4IV | ACGT | 7 cut(s) | 60, 342, 439, 798, 928, 1048, 2618 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 14, 105, 128, 743, 1079, 1513, 2309 |
| HpySE526I | ACGT | 7 cut(s) | 60, 342, 439, 798, 928, 1048, 2618 |
| HspAI | GCGC | 2 cut(s) | 91, 1211 |
| KpnI | GGTACC | 1 cut(s) | 142 |
| Ksp22I | TGATCA | 3 cut(s) | 1150, 1558, 1834 |
| Lsp1109I | GCAGC | 2 cut(s) | 478, 724 |
| LweI | GCATC | 5 cut(s) | 796, 970, 1415, 1771, 2299 |
| MaeI | CTAG | 3 cut(s) | 1208, 1847, 1907 |
| MaeII | ACGT | 7 cut(s) | 60, 342, 439, 798, 928, 1048, 2618 |
| MaeIII | GTNAC | 2 cut(s) | 1477, 1679 |
| MflI | RGATCY | 3 cut(s) | 222, 1226, 2356 |
| MlsI | TGGCCA | 3 cut(s) | 507, 614, 1529 |
| MluI | ACGCGT | 1 cut(s) | 640 |
| MluNI | TGGCCA | 3 cut(s) | 507, 614, 1529 |
| MlyI | GAGTC | 5 cut(s) | 224, 1308, 2023, 2128, 2341 |
| MmeI | TCCRAC | 3 cut(s) | 607, 679, 970 |
| Mox20I | TGGCCA | 3 cut(s) | 507, 614, 1529 |
| Mph1103I | ATGCAT | 1 cut(s) | 1509 |
| MroXI | GAANNNNTTC | 2 cut(s) | 390, 634 |
| MscI | TGGCCA | 3 cut(s) | 507, 614, 1529 |
| MslI | CAYNNNNRTG | 1 cut(s) | 405 |
| Msp20I | TGGCCA | 3 cut(s) | 507, 614, 1529 |
| MspA1I | CMGCKG | 2 cut(s) | 737, 1823 |
| MspI | CCGG | 4 cut(s) | 142, 591, 1961, 2388 |
| MspR9I | CCNGG | 4 cut(s) | 143, 1014, 2388, 2589 |
| Mva1269I | GAATGC | 1 cut(s) | 2084 |
| MvaI | CCWGG | 2 cut(s) | 1014, 2589 |
| MvnI | CGCG | 4 cut(s) | 91, 119, 642, 804 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 14, 105, 128, 743, 1079, 1513, 2309 |
| NciI | CCSGG | 2 cut(s) | 143, 2388 |
| NlaIV | GGNNCC | 3 cut(s) | 140, 1589, 2586 |
| NruI | TCGCGA | 1 cut(s) | 804 |
| NsiI | ATGCAT | 1 cut(s) | 1509 |
| NspI | RCATGY | 5 cut(s) | 323, 359, 611, 1077, 1130 |
| PaeI | GCATGC | 1 cut(s) | 1130 |
| PagI | TCATGA | 2 cut(s) | 997, 2613 |
| PciI | ACATGT | 2 cut(s) | 319, 607 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1045 |
| PctI | GAATGC | 1 cut(s) | 2084 |
| PdmI | GAANNNNTTC | 2 cut(s) | 390, 634 |
| PfeI | GAWTC | 8 cut(s) | 257, 630, 1343, 1449, 1927, 2026, 2266, 2564 |
| PflFI | GACNNNGTC | 1 cut(s) | 1403 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 48 |
| PfoI | TCCNGGA | 1 cut(s) | 1012 |
| PkrI | GCNGC | 3 cut(s) | 121, 493, 739 |
| PleI | GAGTC | 5 cut(s) | 223, 1308, 2022, 2128, 2340 |
| PpsI | GAGTC | 5 cut(s) | 223, 1308, 2022, 2128, 2340 |
| PscI | ACATGT | 2 cut(s) | 319, 607 |
| PsiI | TTATAA | 2 cut(s) | 753, 1899 |
| Psp6I | CCWGG | 2 cut(s) | 1012, 2587 |
| PspGI | CCWGG | 2 cut(s) | 1012, 2587 |
| PspN4I | GGNNCC | 3 cut(s) | 140, 1589, 2586 |
| PspPI | GGNCC | 1 cut(s) | 1010 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1038, 1070 |
| PsuI | RGATCY | 3 cut(s) | 222, 1226, 2356 |
| PsyI | GACNNNGTC | 1 cut(s) | 1403 |
| PvuII | CAGCTG | 2 cut(s) | 737, 1823 |
| RruI | TCGCGA | 1 cut(s) | 804 |
| RsaI | GTAC | 6 cut(s) | 140, 1740, 1868, 1881, 2155, 2449 |
| RsaNI | GTAC | 6 cut(s) | 139, 1739, 1867, 1880, 2154, 2448 |
| RseI | CAYNNNNRTG | 1 cut(s) | 405 |
| SatI | GCNGC | 3 cut(s) | 120, 492, 738 |
| Sau96I | GGNCC | 1 cut(s) | 1010 |
| SchI | GAGTC | 5 cut(s) | 224, 1308, 2023, 2128, 2341 |
| ScrFI | CCNGG | 4 cut(s) | 143, 1014, 2388, 2589 |
| SfaNI | GCATC | 5 cut(s) | 796, 970, 1415, 1771, 2299 |
| SinI | GGWCC | 1 cut(s) | 1010 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 405 |
| SmlI | CTYRAG | 3 cut(s) | 67, 1109, 1612 |
| SmoI | CTYRAG | 3 cut(s) | 67, 1109, 1612 |
| SpeI | ACTAGT | 1 cut(s) | 1846 |
| SphI | GCATGC | 1 cut(s) | 1130 |
| SsiI | CCGC | 3 cut(s) | 119, 254, 1428 |
| SspI | AATATT | 2 cut(s) | 333, 574 |
| SspMI | CTAG | 3 cut(s) | 1208, 1847, 1907 |
| StyD4I | CCNGG | 4 cut(s) | 141, 1012, 2386, 2587 |
| StyI | CCWWGG | 2 cut(s) | 1770, 2102 |
| TaaI | ACNGT | 6 cut(s) | 198, 1193, 1483, 1592, 1685, 2227 |
| TaiI | ACGT | 7 cut(s) | 63, 345, 442, 801, 931, 1051, 2621 |
| TaqI | TCGA | 7 cut(s) | 210, 218, 260, 925, 1312, 1423, 1519 |
| TaqII | GACCGA | 1 cut(s) | 893 |
| TatI | WGTACW | 2 cut(s) | 1866, 2153 |
| TauI | GCSGC | 1 cut(s) | 122 |
| TfiI | GAWTC | 8 cut(s) | 257, 630, 1343, 1449, 1927, 2026, 2266, 2564 |
| TscAI | CASTG | 3 cut(s) | 473, 2401, 2584 |
| TseI | GCWGC | 2 cut(s) | 491, 737 |
| TspDTI | ATGAA | 8 cut(s) | 538, 752, 1059, 1106, 1721, 2366, 2483, 2602 |
| TspGWI | ACGGA | 2 cut(s) | 387, 1451 |
| TspRI | CASTG | 3 cut(s) | 473, 2401, 2584 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1403 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 48 |
| VpaK11BI | GGWCC | 1 cut(s) | 1010 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1152 |
| XapI | RAATTY | 7 cut(s) | 496, 702, 759, 776, 1920, 2470, 2477 |
| XceI | RCATGY | 5 cut(s) | 323, 359, 611, 1077, 1130 |
| XmiI | GTMKAC | 1 cut(s) | 1051 |
| XmnI | GAANNNNTTC | 2 cut(s) | 390, 634 |
| XspI | CTAG | 3 cut(s) | 1208, 1847, 1907 |
| Zsp2I | ATGCAT | 1 cut(s) | 1509 |