Rroxscaffold_3G00226790

water dikinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
10490046 .. 10491640
1595 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00226790.1

Sequence Viewer

Length: 183 bp
ATGGATAAAGAGGAGAAGATTGTATTGGATTACTCAAGTGATCGGATGATAATTGACAGGGCCTTTCAAGTCTCACTCTTCTCAAGAATTGCAGAGGCGCGAAATATATTAGAAGGCCTTTATGCTTGTCCTCAGGACATTGAAAGTGTGGTAAAAGATGGATCGGAAAAGATTCCCCGCTGA

Protein Analysis

60

Amino Acids

6.89

Weight (kDa)

4.76

Isoelectric Point (pI)

57.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 100
AciI CCGC 1 cut(s) 178
AclWI GGATC 1 cut(s) 169
AgsI TTSAA 2 cut(s) 68, 143
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
Alw26I GTCTC 1 cut(s) 76
AlwI GGATC 1 cut(s) 169
AoxI GGCC 2 cut(s) 60, 115
Asp700I GAANNNNTTC 1 cut(s) 171
AspLEI GCGC 1 cut(s) 100
AspS9I GGNCC 1 cut(s) 60
AxyI CCTNAGG 1 cut(s) 132
BccI CCATC 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 60
BpuEI CTTGAG 2 cut(s) 19, 67
Bse21I CCTNAGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 146
BseRI GAGGAG 1 cut(s) 26
Bsh1236I CGCG 1 cut(s) 100
BshFI GGCC 2 cut(s) 62, 117
BsmAI GTCTC 1 cut(s) 76
BsnI GGCC 2 cut(s) 62, 117
Bsp143I GATC 2 cut(s) 40, 161
BspACI CCGC 1 cut(s) 178
BspANI GGCC 2 cut(s) 62, 117
BspCNI CTCAG 1 cut(s) 145
BspFNI CGCG 1 cut(s) 100
BspPI GGATC 1 cut(s) 169
BssMI GATC 2 cut(s) 40, 161
Bst6I CTCTTC 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 51
BstFNI CGCG 1 cut(s) 100
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 2 cut(s) 43, 164
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 2 cut(s) 40, 161
BstUI CGCG 1 cut(s) 100
Bsu36I CCTNAGG 1 cut(s) 132
BsuRI GGCC 2 cut(s) 62, 117
BtsCI GGATG 1 cut(s) 51
CfoI GCGC 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 60
CviJI RGCY 2 cut(s) 62, 117
CviKI_1 RGCY 2 cut(s) 62, 117
DdeI CTNAG 1 cut(s) 132
DpnI GATC 2 cut(s) 42, 163
DpnII GATC 2 cut(s) 40, 161
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Eco147I AGGCCT 1 cut(s) 117
Eco81I CCTNAGG 1 cut(s) 132
EcoO109I RGGNCCY 1 cut(s) 60
FaiI YATR 2 cut(s) 107, 123
FokI GGATG 1 cut(s) 58
GlaI GCGC 1 cut(s) 99
HaeIII GGCC 2 cut(s) 62, 117
HhaI GCGC 1 cut(s) 100
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HinfI GANTC 1 cut(s) 172
Hpy188I TCNGA 2 cut(s) 45, 166
Hpy188III TCNNGA 2 cut(s) 84, 134
HpyAV CCTTC 1 cut(s) 107
HpyCH4V TGCA 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 132
HspAI GCGC 1 cut(s) 98
Kzo9I GATC 2 cut(s) 40, 161
LpnPI CCDG 2 cut(s) 43, 119
MalI GATC 2 cut(s) 42, 163
MboI GATC 2 cut(s) 40, 161
MboII GAAGA 2 cut(s) 28, 70
MluCI AATT 2 cut(s) 51, 87
MnlI CCTC 3 cut(s) 4, 88, 141
MroXI GAANNNNTTC 1 cut(s) 171
MspA1I CMGCKG 1 cut(s) 180
MvnI CGCG 1 cut(s) 100
NdeII GATC 2 cut(s) 40, 161
PceI AGGCCT 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 172
PspPI GGNCC 1 cut(s) 60
Sau3AI GATC 2 cut(s) 40, 161
Sau96I GGNCC 1 cut(s) 60
SgeI CNNG 7 cut(s) 48, 70, 80, 96, 111, 138, 146
SmlI CTYRAG 2 cut(s) 34, 82
SmoI CTYRAG 2 cut(s) 34, 82
Sse9I AATT 2 cut(s) 51, 87
SseBI AGGCCT 1 cut(s) 117
SsiI CCGC 1 cut(s) 178
StuI AGGCCT 1 cut(s) 117
TasI AATT 2 cut(s) 51, 87
TfiI GAWTC 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.