Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Reverse (-)

12118770 .. 12121090

Gene Structure 2321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001213

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGTGGCCTACACCAGTTCCCAGATCCCACAGCATCGCCACAGAAGAAAAGGAAATAAGATGAGCACGCTCACTTCTTGTTCCCAATGGCCGATGATTTTCTCAACATATAGGCAATTAGTAATAACGATATGTCAAGGGGGAGATCGTAGTCTTGTTGAGCTATTTTTCTTCTGTATTTGGTGGACTGCTGCTCATCAGCGAAAGCAACTAAAAGCAAGGACCAGATGTCTTGCCGAGTCTCCAGTGCACTCTTCTAGCAGTGATGACCTTGCCGGTGTGCTTGAGAGAGAACTAGACTCCGGTTCTTCGGAGTCATCACCAGACGAAGAAGATAAAGAAGCTGACAGTGATGTTGAAAGTGAGAGCAGGATAAAAGGGCATAAGGGAGATAATTTGGAAAGCATAGAGGAAACTAATGGGTCGACTTCACAAGGACTTTCAGAACAAAATTCAGAAGCATCTGCAACGGAGGATATGTGTGCACATCCTGGGTCATTTGGAGATATGTGTTTTCTTTGTGGCCGGAGGTTGATTGAGCAGTCTGGTGTGACATTTGGGTACATACACAAAGTACTCGCCTGGATGACTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

199

Amino Acids

22.05

Weight (kDa)

5.36

Isoelectric Point (pI)

64.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	425
AclWI	GGATC	1 cut(s)	19
AcoI	YGGCCR	2 cut(s)	89, 523
AcsI	RAATTY	1 cut(s)	451
AfaI	GTAC	2 cut(s)	563, 576
AgsI	TTSAA	1 cut(s)	359
AhdI	GACNNNNNGTC	1 cut(s)	228
AhlI	ACTAGT	1 cut(s)	590
AjnI	CCWGG	2 cut(s)	490, 581
AluBI	AGCT	2 cut(s)	163, 344
AluI	AGCT	2 cut(s)	163, 344
Alw21I	GWGCWC	3 cut(s)	68, 252, 487
Alw26I	GTCTC	1 cut(s)	246
Alw44I	GTGCAC	2 cut(s)	248, 483
AlwI	GGATC	1 cut(s)	19
AoxI	GGCC	3 cut(s)	6, 89, 523
ApaLI	GTGCAC	2 cut(s)	248, 483
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	312
AvaII	GGWCC	1 cut(s)	222
BaeGI	GKGCMC	2 cut(s)	252, 487
Bbv12I	GWGCWC	3 cut(s)	68, 252, 487
BbvI	GCAGC	1 cut(s)	178
BciT130I	CCWGG	2 cut(s)	492, 583
BcoDI	GTCTC	1 cut(s)	246
BcuI	ACTAGT	1 cut(s)	590
BfaI	CTAG	3 cut(s)	258, 296, 591
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
BmcAI	AGTACT	1 cut(s)	576
Bme1390I	CCNGG	2 cut(s)	492, 583
Bme18I	GGWCC	1 cut(s)	222
BmeRI	GACNNNNNGTC	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	222
BmrFI	CCNGG	2 cut(s)	492, 583
BmsI	GCATC	2 cut(s)	43, 470
BpmI	CTGGAG	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	491
BsaWI	WCCGGW	1 cut(s)	302
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	2 cut(s)	15, 245
BseBI	CCWGG	2 cut(s)	492, 583
BseDI	CCNNGG	1 cut(s)	491
BseGI	GGATG	2 cut(s)	487, 591
BseNI	ACTGG	2 cut(s)	15, 245
BseSI	GKGCMC	2 cut(s)	252, 487
BseXI	GCAGC	1 cut(s)	178
BshFI	GGCC	3 cut(s)	8, 91, 525
BsiHKAI	GWGCWC	3 cut(s)	68, 252, 487
BsiSI	CCGG	3 cut(s)	276, 303, 526
BsmAI	GTCTC	1 cut(s)	246
BsnI	GGCC	3 cut(s)	8, 91, 525
Bsp1286I	GDGCHC	3 cut(s)	68, 252, 487
Bsp143I	GATC	2 cut(s)	24, 145
BspANI	GGCC	3 cut(s)	8, 91, 525
BspPI	GGATC	1 cut(s)	19
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	2 cut(s)	15, 245
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	491
BssMI	GATC	2 cut(s)	24, 145
Bst2UI	CCWGG	2 cut(s)	492, 583
Bst4CI	ACNGT	1 cut(s)	350
Bst6I	CTCTTC	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	68
BstF5I	GGATG	2 cut(s)	487, 591
BstKTI	GATC	2 cut(s)	27, 148
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	2 cut(s)	24, 145
BstNI	CCWGG	2 cut(s)	492, 583
BstSCI	CCNGG	2 cut(s)	490, 581
BstSLI	GKGCMC	2 cut(s)	252, 487
BstV1I	GCAGC	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	24
BstYI	RGATCY	1 cut(s)	24
BsuRI	GGCC	3 cut(s)	8, 91, 525
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	487, 591
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	3 cut(s)	252, 268, 355
Cac8I	GCNNGC	1 cut(s)	68
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	222
Csp6I	GTAC	2 cut(s)	562, 575
CviJI	RGCY	5 cut(s)	8, 91, 163, 344, 525
CviKI_1	RGCY	5 cut(s)	8, 91, 163, 344, 525
CviQI	GTAC	2 cut(s)	562, 575
DpnI	GATC	2 cut(s)	26, 147
DpnII	GATC	2 cut(s)	24, 145
DriI	GACNNNNNGTC	1 cut(s)	228
EaeI	YGGCCR	2 cut(s)	89, 523
Eam1104I	CTCTTC	1 cut(s)	259
Eam1105I	GACNNNNNGTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	222
EcoRII	CCWGG	2 cut(s)	490, 581
FaiI	YATR	8 cut(s)	109, 111, 133, 384, 407, 479, 509, 566
FblI	GTMKAC	1 cut(s)	425
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	1 cut(s)	474
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	3 cut(s)	258, 296, 591
GluI	GCNGC	1 cut(s)	192
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	3 cut(s)	8, 91, 525
HapII	CCGG	3 cut(s)	276, 303, 526
HincII	GTYRAC	1 cut(s)	426
HindII	GTYRAC	1 cut(s)	426
HinfI	GANTC	3 cut(s)	239, 299, 314
HpaII	CCGG	3 cut(s)	276, 303, 526
HphI	GGTGA	1 cut(s)	312
Hpy166II	GTNNAC	4 cut(s)	186, 250, 426, 485
Hpy188I	TCNGA	3 cut(s)	313, 445, 457
Hpy8I	GTNNAC	4 cut(s)	186, 250, 426, 485
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4V	TGCA	3 cut(s)	250, 467, 485
Kzo9I	GATC	2 cut(s)	24, 145
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	2 cut(s)	43, 470
MaeI	CTAG	3 cut(s)	258, 296, 591
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	2 cut(s)	26, 147
MboI	GATC	2 cut(s)	24, 145
MboII	GAAGA	6 cut(s)	57, 163, 246, 300, 341, 344
MflI	RGATCY	1 cut(s)	24
MhlI	GDGCHC	3 cut(s)	68, 252, 487
MluCI	AATT	3 cut(s)	116, 394, 451
MlyI	GAGTC	3 cut(s)	248, 293, 323
MnlI	CCTC	3 cut(s)	403, 466, 522
MspI	CCGG	3 cut(s)	276, 303, 526
MspR9I	CCNGG	2 cut(s)	492, 583
MvaI	CCWGG	2 cut(s)	492, 583
NdeII	GATC	2 cut(s)	24, 145
NmeAIII	GCCGAG	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	550
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	3 cut(s)	247, 293, 322
PpsI	GAGTC	3 cut(s)	247, 293, 322
Psp6I	CCWGG	2 cut(s)	490, 581
PspGI	CCWGG	2 cut(s)	490, 581
PspPI	GGNCC	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	24
RsaI	GTAC	2 cut(s)	563, 576
RsaNI	GTAC	2 cut(s)	562, 575
SalI	GTCGAC	1 cut(s)	424
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	2 cut(s)	24, 145
Sau96I	GGNCC	1 cut(s)	222
ScaI	AGTACT	1 cut(s)	576
SchI	GAGTC	3 cut(s)	248, 293, 323
ScrFI	CCNGG	2 cut(s)	492, 583
SduI	GDGCHC	3 cut(s)	68, 252, 487
SetI	ASST	4 cut(s)	165, 273, 346, 533
SfaNI	GCATC	2 cut(s)	43, 470
SinI	GGWCC	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
SpeI	ACTAGT	1 cut(s)	590
Sse9I	AATT	3 cut(s)	116, 394, 451
SspMI	CTAG	3 cut(s)	258, 296, 591
StyD4I	CCNGG	2 cut(s)	490, 581
TaaI	ACNGT	1 cut(s)	350
TaqI	TCGA	1 cut(s)	425
TasI	AATT	3 cut(s)	116, 394, 451
TatI	WGTACW	1 cut(s)	574
TscAI	CASTG	3 cut(s)	252, 268, 355
TseFI	GTSAC	1 cut(s)	550
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	550
TspGWI	ACGGA	1 cut(s)	485
TspRI	CASTG	3 cut(s)	252, 268, 355
VneI	GTGCAC	2 cut(s)	248, 483
VpaK11BI	GGWCC	1 cut(s)	222
XapI	RAATTY	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	425
XspI	CTAG	3 cut(s)	258, 296, 591
ZrmI	AGTACT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.