Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003291.1

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Reverse (-)

117606 .. 121095

Gene Structure 3490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003291.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atggtttgtgttgaaaggcacaaccatgaatttgtgaatatagaatttggtaggcctcaagatggctaccatgagcactgttcaatggctaggagaagtcgccatgaacaatatgatccatatgatcaacctgctcaagaagctctttttctctcgctcttctctgaaaccctagcgctctcctccctctcctgctctctttccacggctactgtctctccctcattgaactactgcctccgtcccctcatcggtgccatcgcctctaccagtgcttctcttccaacgccaccacatcgttgctccgagatccgaaccccaactggtccaacttgcctccaaggagtttatcctcctcgattggtctgggcttcaaagtggaatgagagagcatacttcagcacaagaaaagtgaaattagaccatgattatctttgcatggctgtccttgttcaagaaataataaatgccgactatgcattcgttattcacacaactaacccatcttcaggagactcgtcagagatatatgccggggttgtcaaaggtcttggagaaaccttagttggagcttatcctggacgtgccttaagttttattagcaagaaaaatgctctggactctcctcaggtgttaggttaccctaacaaaccggttggcctctttatcagacgatccataatcttccgatccgattccaatggtgaagatcttgaaggttatgctggtgcaggcctttatgacagtgtgcctatggatgcggaagaggaagtcgtgcttgactactcatctgacccactcgttactgatgggaacttccaaaagataattctgtccagcattgctcgtgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009631 GO:0009941 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0031967 GO:0031975 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050521 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPDK_N

Protein Analysis

284

Amino Acids

31.27

Weight (kDa)

5.49

Isoelectric Point (pI)

57.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	139
AccB1I	GGYRCC	1 cut(s)	254
AciI	CCGC	1 cut(s)	761
AclWI	GGATC	4 cut(s)	110, 304, 669, 684
AcsI	RAATTY	2 cut(s)	29, 44
AcuI	CTGAAG	2 cut(s)	382, 492
AfeI	AGCGCT	1 cut(s)	177
AfiI	CCNNNNNNNGG	3 cut(s)	62, 251, 509
AflII	CTTAAG	1 cut(s)	589
AgeI	ACCGGT	1 cut(s)	652
AgsI	TTSAA	6 cut(s)	14, 84, 229, 375, 455, 716
AjiI	CACGTC	1 cut(s)	584
AjnI	CCWGG	1 cut(s)	577
AjuI	GAANNNNNNNTTGG	4 cut(s)	549, 581, 813, 845
AluBI	AGCT	2 cut(s)	143, 572
AluI	AGCT	2 cut(s)	143, 572
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	2 cut(s)	220, 507
AlwI	GGATC	4 cut(s)	110, 304, 669, 684
Aor51HI	AGCGCT	1 cut(s)	177
AoxI	GGCC	3 cut(s)	53, 658, 733
ApoI	RAATTY	2 cut(s)	29, 44
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AsiGI	ACCGGT	1 cut(s)	652
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	326
AsuC2I	CCSGG	1 cut(s)	535
AsuHPI	GGTGA	1 cut(s)	716
AvaII	GGWCC	1 cut(s)	326
AxyI	CCTNAGG	1 cut(s)	627
BanI	GGYRCC	1 cut(s)	254
BauI	CACGAG	1 cut(s)	846
Bbv12I	GWGCWC	1 cut(s)	78
BccI	CCATC	4 cut(s)	56, 266, 511, 803
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	1 cut(s)	579
BclI	TGATCA	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	535
BcoDI	GTCTC	2 cut(s)	220, 507
BfaI	CTAG	2 cut(s)	90, 173
BfoI	RGCGCY	1 cut(s)	179
BfrI	CTTAAG	1 cut(s)	589
BfuAI	ACCTGC	1 cut(s)	139
BglII	AGATCT	1 cut(s)	709
Bme1390I	CCNGG	2 cut(s)	535, 579
Bme18I	GGWCC	1 cut(s)	326
BmgBI	CACGTC	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	2 cut(s)	535, 579
BmsI	GCATC	1 cut(s)	748
BpuEI	CTTGAG	2 cut(s)	42, 120
BpuMI	CCSGG	1 cut(s)	535
BsaJI	CCNNGG	3 cut(s)	204, 340, 534
BsaWI	WCCGGW	1 cut(s)	652
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 251, 509
Bse118I	RCCGGY	1 cut(s)	652
Bse1I	ACTGG	2 cut(s)	270, 328
Bse21I	CCTNAGG	1 cut(s)	627
Bse3DI	GCAATG	1 cut(s)	840
BseBI	CCWGG	1 cut(s)	579
BseDI	CCNNGG	3 cut(s)	204, 340, 534
BseGI	GGATG	1 cut(s)	763
BseLI	CCNNNNNNNGG	3 cut(s)	62, 251, 509
BseMI	GCAATG	1 cut(s)	840
BseMII	CTCAG	1 cut(s)	641
BseNI	ACTGG	2 cut(s)	270, 328
BseRI	GAGGAG	3 cut(s)	172, 345, 615
BsgI	GTGCAG	1 cut(s)	750
BshFI	GGCC	3 cut(s)	55, 660, 735
BshNI	GGYRCC	1 cut(s)	254
BshTI	ACCGGT	1 cut(s)	652
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	534, 653
BslFI	GGGAC	1 cut(s)	228
BslI	CCNNNNNNNGG	3 cut(s)	62, 251, 509
BsmAI	GTCTC	2 cut(s)	220, 507
BsmFI	GGGAC	1 cut(s)	228
BsmI	GAATGC	1 cut(s)	479
BsnI	GGCC	3 cut(s)	55, 660, 735
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	6 cut(s)	115, 124, 309, 674, 689, 709
BspACI	CCGC	1 cut(s)	761
BspANI	GGCC	3 cut(s)	55, 660, 735
BspCNI	CTCAG	1 cut(s)	640
BspLI	GGNNCC	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	139
BspPI	GGATC	4 cut(s)	110, 304, 669, 684
BspQI	GCTCTTC	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	254
BspTI	CTTAAG	1 cut(s)	589
BsrDI	GCAATG	1 cut(s)	840
BsrFI	RCCGGY	1 cut(s)	652
BsrI	ACTGG	2 cut(s)	270, 328
BssAI	RCCGGY	1 cut(s)	652
BssECI	CCNNGG	3 cut(s)	204, 340, 534
BssMI	GATC	6 cut(s)	115, 124, 309, 674, 689, 709
BssSI	CACGAG	1 cut(s)	846
BssT1I	CCWWGG	1 cut(s)	340
Bst2BI	CACGAG	1 cut(s)	846
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	3 cut(s)	80, 214, 746
Bst6I	CTCTTC	3 cut(s)	164, 285, 759
BstAFI	CTTAAG	1 cut(s)	589
BstC8I	GCNNGC	1 cut(s)	733
BstDEI	CTNAG	2 cut(s)	562, 627
BstDSI	CCRYGG	1 cut(s)	204
BstEII	GGTNACC	1 cut(s)	638
BstF5I	GGATG	1 cut(s)	763
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	6 cut(s)	118, 127, 312, 677, 692, 712
BstMAI	GTCTC	2 cut(s)	220, 507
BstMBI	GATC	6 cut(s)	115, 124, 309, 674, 689, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 476
BstNI	CCWGG	1 cut(s)	579
BstPI	GGTNACC	1 cut(s)	638
BstSCI	CCNGG	2 cut(s)	533, 577
BstX2I	RGATCY	2 cut(s)	309, 709
BstYI	RGATCY	2 cut(s)	309, 709
Bsu36I	CCTNAGG	1 cut(s)	627
BsuRI	GGCC	3 cut(s)	55, 660, 735
BtgI	CCRYGG	1 cut(s)	204
BtgZI	GCGATG	1 cut(s)	244
BtrI	CACGTC	1 cut(s)	584
BtsCI	GGATG	1 cut(s)	763
BtsIMutI	CAGTG	3 cut(s)	76, 277, 751
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	733
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	652
Cfr13I	GGNCC	1 cut(s)	326
CspAI	ACCGGT	1 cut(s)	652
CviAII	CATG	6 cut(s)	26, 71, 104, 425, 439, 852
DdeI	CTNAG	2 cut(s)	562, 627
DpnI	GATC	6 cut(s)	117, 126, 311, 676, 691, 711
DpnII	GATC	6 cut(s)	115, 124, 309, 674, 689, 709
Eam1104I	CTCTTC	3 cut(s)	164, 285, 759
EarI	CTCTTC	3 cut(s)	164, 285, 759
Eco130I	CCWWGG	1 cut(s)	340
Eco147I	AGGCCT	2 cut(s)	55, 735
Eco47I	GGWCC	1 cut(s)	326
Eco47III	AGCGCT	1 cut(s)	177
Eco57I	CTGAAG	2 cut(s)	382, 492
Eco81I	CCTNAGG	1 cut(s)	627
Eco91I	GGTNACC	1 cut(s)	638
EcoO65I	GGTNACC	1 cut(s)	638
EcoRII	CCWGG	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	340
EcoT22I	ATGCAT	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	6 cut(s)	29, 74, 107, 428, 442, 855
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 762, 794
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	6 cut(s)	25, 70, 103, 424, 438, 851
FauNDI	CATATG	1 cut(s)	121
FbaI	TGATCA	1 cut(s)	124
FokI	GGATG	1 cut(s)	770
FspBI	CTAG	2 cut(s)	90, 173
GlaI	GCGC	1 cut(s)	177
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	3 cut(s)	55, 660, 735
HapII	CCGG	2 cut(s)	534, 653
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	6 cut(s)	29, 74, 107, 428, 442, 855
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	3 cut(s)	515, 620, 695
HpaII	CCGG	2 cut(s)	534, 653
HphI	GGTGA	1 cut(s)	716
Hpy188I	TCNGA	8 cut(s)	166, 307, 314, 523, 671, 689, 694, 793
Hpy188III	TCNNGA	6 cut(s)	59, 137, 455, 510, 617, 713
HpyAV	CCTTC	1 cut(s)	710
HpyCH4III	ACNGT	3 cut(s)	80, 214, 746
HpyCH4IV	ACGT	1 cut(s)	583
HpyCH4V	TGCA	4 cut(s)	438, 479, 731, 851
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 476
HpyF3I	CTNAG	2 cut(s)	562, 627
HpySE526I	ACGT	1 cut(s)	583
Hsp92II	CATG	6 cut(s)	29, 74, 107, 428, 442, 855
HspAI	GCGC	1 cut(s)	176
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	6 cut(s)	115, 124, 309, 674, 689, 709
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	2 cut(s)	308, 569
LweI	GCATC	1 cut(s)	748
MaeI	CTAG	2 cut(s)	90, 173
MaeII	ACGT	1 cut(s)	583
MaeIII	GTNAC	2 cut(s)	638, 802
MalI	GATC	6 cut(s)	117, 126, 311, 676, 691, 711
MboI	GATC	6 cut(s)	115, 124, 309, 674, 689, 709
MboII	GAAGA	6 cut(s)	151, 272, 498, 676, 719, 776
MflI	RGATCY	2 cut(s)	309, 709
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	4 cut(s)	29, 44, 416, 828
MlyI	GAGTC	2 cut(s)	509, 614
MmeI	TCCRAC	3 cut(s)	308, 353, 547
Mph1103I	ATGCAT	1 cut(s)	481
MseI	TTAA	1 cut(s)	590
MslI	CAYNNNNRTG	1 cut(s)	24
MspCI	CTTAAG	1 cut(s)	589
MspI	CCGG	2 cut(s)	534, 653
MspR9I	CCNGG	2 cut(s)	535, 579
Mva1269I	GAATGC	1 cut(s)	479
MvaI	CCWGG	1 cut(s)	579
MwoI	GCNNNNNNNGC	2 cut(s)	140, 476
NciI	CCSGG	1 cut(s)	535
NdeI	CATATG	1 cut(s)	121
NdeII	GATC	6 cut(s)	115, 124, 309, 674, 689, 709
NlaIII	CATG	6 cut(s)	29, 74, 107, 428, 442, 855
NlaIV	GGNNCC	1 cut(s)	256
NsiI	ATGCAT	1 cut(s)	481
PceI	AGGCCT	2 cut(s)	55, 735
PciSI	GCTCTTC	1 cut(s)	164
PctI	GAATGC	1 cut(s)	479
PfeI	GAWTC	1 cut(s)	695
PfoI	TCCNGGA	1 cut(s)	577
PinAI	ACCGGT	1 cut(s)	652
PleI	GAGTC	2 cut(s)	509, 614
PpsI	GAGTC	2 cut(s)	509, 614
Psp6I	CCWGG	1 cut(s)	577
PspEI	GGTNACC	1 cut(s)	638
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	326
PsuI	RGATCY	2 cut(s)	309, 709
RseI	CAYNNNNRTG	1 cut(s)	24
SapI	GCTCTTC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	590
Sau3AI	GATC	6 cut(s)	115, 124, 309, 674, 689, 709
Sau96I	GGNCC	1 cut(s)	326
SchI	GAGTC	2 cut(s)	509, 614
ScrFI	CCNGG	2 cut(s)	535, 579
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	9 cut(s)	133, 145, 550, 563, 574, 586, 633, 640, 721
SfaNI	GCATC	1 cut(s)	748
SinI	GGWCC	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	3 cut(s)	57, 135, 589
SmoI	CTYRAG	3 cut(s)	57, 135, 589
Sse9I	AATT	4 cut(s)	29, 44, 416, 828
SseBI	AGGCCT	2 cut(s)	55, 735
SsiI	CCGC	1 cut(s)	761
SspMI	CTAG	2 cut(s)	90, 173
StuI	AGGCCT	2 cut(s)	55, 735
StyD4I	CCNGG	2 cut(s)	533, 577
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	3 cut(s)	80, 214, 746
TaiI	ACGT	1 cut(s)	586
TaqI	TCGA	1 cut(s)	358
TasI	AATT	4 cut(s)	29, 44, 416, 828
TfiI	GAWTC	1 cut(s)	695
Tru1I	TTAA	1 cut(s)	590
Tru9I	TTAA	1 cut(s)	590
TscAI	CASTG	3 cut(s)	83, 277, 751
TspDTI	ATGAA	2 cut(s)	42, 120
TspGWI	ACGGA	1 cut(s)	230
TspRI	CASTG	3 cut(s)	83, 277, 751
Vha464I	CTTAAG	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	326
XapI	RAATTY	2 cut(s)	29, 44
XspI	CTAG	2 cut(s)	90, 173
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.