Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Forward (+)

20947121 .. 20947600

Gene Structure 480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0119700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGTTCATGCTGTGAACTTGCGGCCAAGGTTCGACCCACCATTGCCGCACCATTCCTTTGGGAACCTTTATCGAGTCTCCATGACAGCTCCGTTACAAATAAGTTCCAGAGAACTATACCATGGTACACGAGAAGTAATAAGCAAGATCGACAATGAGTACGTGAGAAAACTACAGAAAGGTGATGAGCATTTGAGTTCCATCAAGACCTATGCTAAAAGTTTTGCTAAAGGCGAGCAGGTTACAATTAGCTCCAGTAGTTATTGCAGGTTTCCTTTGTACGATAATGATTTTGGTTGGGGGAGGCCTACGTGGTTGGGGTCGCCAGCACTGACGTTCAAGAACCTGGTGACCTTCATGGATACCAAAGAGGGTGGTGGGATTGAGGCTTATATTAGCTTGGAGGAGGAAGTCATGACTAAGTTAGGGAACGATGTGGAGCTTTTAGCTTATGTGTCTCCAAGTGCGGTGTTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009631 GO:0009941 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0031967 GO:0031975 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050521 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPDK_N

Protein Analysis

159

Amino Acids

17.92

Weight (kDa)

6.51

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	1 - 148	4.7e-22	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	229, 258
AciI	CCGC	3 cut(s)	22, 47, 467
AcoI	YGGCCR	1 cut(s)	23
AfaI	GTAC	3 cut(s)	127, 161, 281
AgsI	TTSAA	2 cut(s)	340, 475
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	5 cut(s)	89, 252, 399, 442, 449
AluI	AGCT	5 cut(s)	89, 252, 399, 442, 449
Alw26I	GTCTC	2 cut(s)	82, 462
AoxI	GGCC	2 cut(s)	23, 305
AsuHPI	GGTGA	2 cut(s)	194, 361
BauI	CACGAG	1 cut(s)	129
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	347
BciVI	GTATCC	1 cut(s)	355
BcoDI	GTCTC	2 cut(s)	82, 462
BfmI	CTRYAG	1 cut(s)	173
BfuAI	ACCTGC	2 cut(s)	229, 258
BfuI	GTATCC	1 cut(s)	355
BisI	GCNGC	2 cut(s)	23, 47
BlsI	GCNGC	2 cut(s)	24, 48
Bme1390I	CCNGG	1 cut(s)	347
BmiI	GGNNCC	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	347
BpmI	CTGGAG	1 cut(s)	238
BsaAI	YACGTR	2 cut(s)	163, 312
BsaJI	CCNNGG	2 cut(s)	26, 121
Bse1I	ACTGG	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	2 cut(s)	26, 121
BseMI	GCAATG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	419
BshFI	GGCC	2 cut(s)	25, 307
BsmAI	GTCTC	2 cut(s)	82, 462
BsnI	GGCC	2 cut(s)	25, 307
Bsp143I	GATC	1 cut(s)	147
Bsp19I	CCATGG	1 cut(s)	121
BspACI	CCGC	3 cut(s)	22, 47, 467
BspANI	GGCC	2 cut(s)	25, 307
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	65
BspMI	ACCTGC	2 cut(s)	229, 258
BsrDI	GCAATG	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	255
BssECI	CCNNGG	2 cut(s)	26, 121
BssMI	GATC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	129
BssT1I	CCWWGG	2 cut(s)	26, 121
Bst2BI	CACGAG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	347
BstBAI	YACGTR	2 cut(s)	163, 312
BstC8I	GCNNGC	2 cut(s)	236, 327
BstDEI	CTNAG	1 cut(s)	420
BstDSI	CCRYGG	1 cut(s)	121
BstEII	GGTNACC	1 cut(s)	349
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	2 cut(s)	82, 462
BstMBI	GATC	1 cut(s)	147
BstNI	CCWGG	1 cut(s)	347
BstPI	GGTNACC	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	345
BstSFI	CTRYAG	1 cut(s)	173
BstXI	CCANNNNNNTGG	1 cut(s)	59
BsuI	GTATCC	1 cut(s)	355
BsuRI	GGCC	2 cut(s)	25, 307
BtgI	CCRYGG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	329
BveI	ACCTGC	2 cut(s)	229, 258
Cac8I	GCNNGC	2 cut(s)	236, 327
CciI	TCATGA	1 cut(s)	414
CsiI	ACCWGGT	1 cut(s)	345
Csp6I	GTAC	3 cut(s)	126, 160, 280
CspCI	CAANNNNNGTGG	2 cut(s)	355, 390
CviAII	CATG	5 cut(s)	8, 82, 122, 358, 415
CviJI	RGCY	8 cut(s)	25, 89, 252, 307, 389, 399, 442, 449
CviKI_1	RGCY	8 cut(s)	25, 89, 252, 307, 389, 399, 442, 449
CviQI	GTAC	3 cut(s)	126, 160, 280
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
EaeI	YGGCCR	1 cut(s)	23
Eco130I	CCWWGG	2 cut(s)	26, 121
Eco147I	AGGCCT	1 cut(s)	307
Eco91I	GGTNACC	1 cut(s)	349
EcoO65I	GGTNACC	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	2 cut(s)	26, 121
ErhI	CCWWGG	2 cut(s)	26, 121
FaeI	CATG	5 cut(s)	11, 85, 125, 361, 418
FaiI	YATR	9 cut(s)	9, 83, 118, 123, 213, 359, 393, 416, 453
FatI	CATG	5 cut(s)	7, 81, 121, 357, 414
Fnu4HI	GCNGC	2 cut(s)	23, 47
Fsp4HI	GCNGC	2 cut(s)	23, 47
GluI	GCNGC	2 cut(s)	23, 47
GsuI	CTGGAG	1 cut(s)	238
HaeIII	GGCC	2 cut(s)	25, 307
Hin1II	CATG	5 cut(s)	11, 85, 125, 361, 418
HinfI	GANTC	1 cut(s)	75
HphI	GGTGA	2 cut(s)	194, 361
Hpy166II	GTNNAC	2 cut(s)	16, 128
Hpy188III	TCNNGA	4 cut(s)	108, 205, 340, 415
Hpy8I	GTNNAC	2 cut(s)	16, 128
HpyAV	CCTTC	1 cut(s)	364
HpyCH4IV	ACGT	3 cut(s)	162, 311, 335
HpyCH4V	TGCA	1 cut(s)	267
HpyF3I	CTNAG	1 cut(s)	420
HpySE526I	ACGT	3 cut(s)	162, 311, 335
Hsp92II	CATG	5 cut(s)	11, 85, 125, 361, 418
Kzo9I	GATC	1 cut(s)	147
LmnI	GCTCC	3 cut(s)	94, 257, 439
LpnPI	CCDG	7 cut(s)	121, 224, 253, 268, 332, 339, 359
MabI	ACCWGGT	1 cut(s)	345
MaeII	ACGT	3 cut(s)	162, 311, 335
MaeIII	GTNAC	3 cut(s)	93, 241, 349
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MluCI	AATT	1 cut(s)	246
MlyI	GAGTC	1 cut(s)	84
MnlI	CCTC	5 cut(s)	297, 364, 379, 397, 400
MspR9I	CCNGG	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	347
NcoI	CCATGG	1 cut(s)	121
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	5 cut(s)	11, 85, 125, 361, 418
NlaIV	GGNNCC	1 cut(s)	65
NmuCI	GTSAC	1 cut(s)	349
PagI	TCATGA	1 cut(s)	414
PceI	AGGCCT	1 cut(s)	307
PkrI	GCNGC	2 cut(s)	24, 48
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Ppu21I	YACGTR	2 cut(s)	163, 312
Psp6I	CCWGG	1 cut(s)	345
PspEI	GGTNACC	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	65
RsaI	GTAC	3 cut(s)	127, 161, 281
RsaNI	GTAC	3 cut(s)	126, 160, 280
SatI	GCNGC	2 cut(s)	23, 47
Sau3AI	GATC	1 cut(s)	147
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	1 cut(s)	347
SexAI	ACCWGGT	1 cut(s)	345
SfcI	CTRYAG	1 cut(s)	173
Sse9I	AATT	1 cut(s)	246
SseBI	AGGCCT	1 cut(s)	307
SsiI	CCGC	3 cut(s)	22, 47, 467
StuI	AGGCCT	1 cut(s)	307
StyD4I	CCNGG	1 cut(s)	345
StyI	CCWWGG	2 cut(s)	26, 121
TaiI	ACGT	3 cut(s)	165, 314, 338
TaqI	TCGA	3 cut(s)	33, 73, 150
TasI	AATT	1 cut(s)	246
TauI	GCSGC	2 cut(s)	25, 49
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	1 cut(s)	349
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	346
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.