Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Reverse (-)

54685283 .. 54691498

Gene Structure 6216 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G036220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAGTGGTATAGAATATAAGATTTCTTCATTTTACAAATGTGTGAAGAGCGGCGACCTCTCTAAACTTCAAGCAATACAAGAAACTATTGTACAAATGAATGCTCCTCTTTCTTTGACCCATCAACTTAAGAGCATAATGAAGAGTACTTCAAGAATACCTTGGCCTGGTGATGAAGGTGACGAGAGGTGGAATCAAGCTTGGTGTGCAATAAAGAAGTGGAATGAAAGAGCTTTTATTAGTTGTAAGAAAGCTAAACTAGATGATGAGGATATATGCATTGCTGTATTGATTCAAGAAATCATCTGGCTTGGGGGAGACTTTGTGGGTGCATATCCTGGACGAGCCATGAGCTTCTTAACCCAAAAAGCCAATCTAAACTCTCCTACTGTTAATTGTTATCCAAGCAAGCCAATAGGGCTGTATAGCAAGAAGTCTATCATATTCAGATCAGACTCAAATGCTGAGGATGTGGAAGGATATGCAGGTGCTGGGCTTTATGACAGTTTAATCATGGATAAAGAGGAGAAGATTGTATTGGATTACACAAGCGATCGGATAATCATTGATAGGGCCTTGCAGGTCTCACTCTTCTCAAGAATTTCCGAGACGGGAAAGATATTTGAAGGCCTTTATGGTTGTCCTCAGGACATTGAAGGTGTGGTAAAAGATGGATTGATATATGTAGTTCAGTCAAGGCCACAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

236

Amino Acids

26.44

Weight (kDa)

5.61

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	476
Acc36I	ACCTGC	2 cut(s)	476, 571
AccBSI	CCGCTC	1 cut(s)	51
AciI	CCGC	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	600
AfaI	GTAC	2 cut(s)	93, 148
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	5 cut(s)	71, 153, 296, 626, 656
AjnI	CCWGG	2 cut(s)	166, 337
AjuI	GAANNNNNNNTTGG	2 cut(s)	521, 553
AluBI	AGCT	4 cut(s)	200, 233, 254, 354
AluI	AGCT	4 cut(s)	200, 233, 254, 354
Alw26I	GTCTC	3 cut(s)	312, 589, 602
AlwNI	CAGNNNCTG	1 cut(s)	491
AoxI	GGCC	4 cut(s)	164, 573, 628, 698
ApoI	RAATTY	1 cut(s)	600
AspS9I	GGNCC	1 cut(s)	573
AsuHPI	GGTGA	2 cut(s)	182, 191
AxyI	CCTNAGG	1 cut(s)	645
BbvCI	CCTCAGC	1 cut(s)	465
BccI	CCATC	2 cut(s)	129, 665
BciT130I	CCWGG	2 cut(s)	168, 339
BcoDI	GTCTC	3 cut(s)	312, 589, 602
BfaI	CTAG	1 cut(s)	260
BfrI	CTTAAG	1 cut(s)	128
BfuAI	ACCTGC	2 cut(s)	476, 571
BglI	GCCNNNNNGGC	1 cut(s)	418
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
BmcAI	AGTACT	1 cut(s)	148
Bme1390I	CCNGG	2 cut(s)	168, 339
BmgT120I	GGNCC	1 cut(s)	573
BmrFI	CCNGG	2 cut(s)	168, 339
Bpu10I	CCTNAGC	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	580
BsaI	GGTCTC	1 cut(s)	589
BsaJI	CCNNGG	1 cut(s)	161
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse21I	CCTNAGG	1 cut(s)	645
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	168, 339
BseDI	CCNNGG	1 cut(s)	161
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	2 cut(s)	456, 659
BseRI	GAGGAG	2 cut(s)	96, 539
BseYI	CCCAGC	1 cut(s)	491
Bsh1285I	CGRYCG	1 cut(s)	556
BshFI	GGCC	4 cut(s)	166, 575, 630, 700
BsiEI	CGRYCG	1 cut(s)	556
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	3 cut(s)	312, 589, 602
BsmBI	CGTCTC	1 cut(s)	602
BsmI	GAATGC	1 cut(s)	106
BsnI	GGCC	4 cut(s)	166, 575, 630, 700
Bso31I	GGTCTC	1 cut(s)	589
Bsp1407I	TGTACA	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	449, 553
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	4 cut(s)	166, 575, 630, 700
BspCNI	CTCAG	2 cut(s)	457, 658
BspMI	ACCTGC	2 cut(s)	476, 571
BspQI	GCTCTTC	1 cut(s)	41
BspTI	CTTAAG	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	589
BsrBI	CCGCTC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	279
BsrGI	TGTACA	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	2 cut(s)	449, 553
BssT1I	CCWWGG	1 cut(s)	161
Bst2UI	CCWGG	2 cut(s)	168, 339
Bst4CI	ACNGT	2 cut(s)	391, 506
Bst6I	CTCTTC	3 cut(s)	41, 137, 596
BstAFI	CTTAAG	1 cut(s)	128
BstAUI	TGTACA	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	410
BstDEI	CTNAG	2 cut(s)	465, 645
BstF5I	GGATG	1 cut(s)	475
BstKTI	GATC	2 cut(s)	452, 556
BstMAI	GTCTC	3 cut(s)	312, 589, 602
BstMBI	GATC	2 cut(s)	449, 553
BstMCI	CGRYCG	1 cut(s)	556
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 418
BstNI	CCWGG	2 cut(s)	168, 339
BstSCI	CCNGG	2 cut(s)	166, 337
Bsu36I	CCTNAGG	1 cut(s)	645
BsuRI	GGCC	4 cut(s)	166, 575, 630, 700
BtsCI	GGATG	1 cut(s)	475
BveI	ACCTGC	2 cut(s)	476, 571
Cac8I	GCNNGC	1 cut(s)	410
CaiI	CAGNNNCTG	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	573
Csp6I	GTAC	2 cut(s)	92, 147
CviAII	CATG	2 cut(s)	349, 514
CviQI	GTAC	2 cut(s)	92, 147
DdeI	CTNAG	2 cut(s)	465, 645
DpnI	GATC	2 cut(s)	451, 555
DpnII	GATC	2 cut(s)	449, 553
Eam1104I	CTCTTC	3 cut(s)	41, 137, 596
EarI	CTCTTC	3 cut(s)	41, 137, 596
Eco130I	CCWWGG	1 cut(s)	161
Eco147I	AGGCCT	1 cut(s)	630
Eco31I	GGTCTC	1 cut(s)	589
Eco81I	CCTNAGG	1 cut(s)	645
EcoO109I	RGGNCCY	1 cut(s)	573
EcoRII	CCWGG	2 cut(s)	166, 337
EcoT14I	CCWWGG	1 cut(s)	161
EcoT22I	ATGCAT	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	161
Esp3I	CGTCTC	1 cut(s)	602
FaeI	CATG	2 cut(s)	352, 517
FalI	AAGNNNNNCTT	2 cut(s)	145, 177
FatI	CATG	2 cut(s)	348, 513
Fnu4HI	GCNGC	1 cut(s)	52
FokI	GGATG	1 cut(s)	482
Fsp4HI	GCNGC	1 cut(s)	52
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	1 cut(s)	52
GsaI	CCCAGC	1 cut(s)	495
HaeIII	GGCC	4 cut(s)	166, 575, 630, 700
Hin1II	CATG	2 cut(s)	352, 517
HindIII	AAGCTT	1 cut(s)	198
HinfI	GANTC	3 cut(s)	193, 292, 455
HphI	GGTGA	2 cut(s)	182, 191
Hpy188I	TCNGA	4 cut(s)	449, 454, 558, 607
Hpy188III	TCNNGA	4 cut(s)	153, 296, 597, 647
HpyAV	CCTTC	4 cut(s)	170, 470, 620, 650
HpyCH4III	ACNGT	2 cut(s)	391, 506
HpyCH4V	TGCA	5 cut(s)	209, 279, 332, 485, 580
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 418
HpyF3I	CTNAG	2 cut(s)	465, 645
Hsp92II	CATG	2 cut(s)	352, 517
Kzo9I	GATC	2 cut(s)	449, 553
LguI	GCTCTTC	1 cut(s)	41
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	9 cut(s)	153, 180, 292, 324, 351, 471, 477, 566, 632
MaeI	CTAG	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	2 cut(s)	451, 555
MbiI	CCGCTC	1 cut(s)	51
MboI	GATC	2 cut(s)	449, 553
MboII	GAAGA	5 cut(s)	18, 58, 154, 541, 583
MluCI	AATT	2 cut(s)	394, 600
MlyI	GAGTC	1 cut(s)	449
MnlI	CCTC	7 cut(s)	68, 117, 180, 262, 460, 517, 654
Mph1103I	ATGCAT	1 cut(s)	281
MseI	TTAA	4 cut(s)	129, 359, 393, 509
MspCI	CTTAAG	1 cut(s)	128
MspR9I	CCNGG	2 cut(s)	168, 339
Mva1269I	GAATGC	1 cut(s)	106
MvaI	CCWGG	2 cut(s)	168, 339
MwoI	GCNNNNNNNGC	2 cut(s)	206, 418
NdeII	GATC	2 cut(s)	449, 553
NlaIII	CATG	2 cut(s)	352, 517
NmuCI	GTSAC	1 cut(s)	179
NsiI	ATGCAT	1 cut(s)	281
PaqCI	CACCTGC	1 cut(s)	476
PceI	AGGCCT	1 cut(s)	630
PciSI	GCTCTTC	1 cut(s)	41
PctI	GAATGC	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	193, 292
PfoI	TCCNGGA	1 cut(s)	337
PkrI	GCNGC	1 cut(s)	53
Ple19I	CGATCG	1 cut(s)	556
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
Psp6I	CCWGG	2 cut(s)	166, 337
PspFI	CCCAGC	1 cut(s)	491
PspGI	CCWGG	2 cut(s)	166, 337
PspPI	GGNCC	1 cut(s)	573
PstNI	CAGNNNCTG	1 cut(s)	491
PvuI	CGATCG	1 cut(s)	556
RsaI	GTAC	2 cut(s)	93, 148
RsaNI	GTAC	2 cut(s)	92, 147
SapI	GCTCTTC	1 cut(s)	41
SaqAI	TTAA	4 cut(s)	129, 359, 393, 509
SatI	GCNGC	1 cut(s)	52
Sau3AI	GATC	2 cut(s)	449, 553
Sau96I	GGNCC	1 cut(s)	573
ScaI	AGTACT	1 cut(s)	148
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	2 cut(s)	168, 339
SmlI	CTYRAG	2 cut(s)	128, 595
SmoI	CTYRAG	2 cut(s)	128, 595
Sse9I	AATT	2 cut(s)	394, 600
SseBI	AGGCCT	1 cut(s)	630
SsiI	CCGC	1 cut(s)	51
SspMI	CTAG	1 cut(s)	260
StuI	AGGCCT	1 cut(s)	630
StyD4I	CCNGG	2 cut(s)	166, 337
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	2 cut(s)	391, 506
TasI	AATT	2 cut(s)	394, 600
TatI	WGTACW	2 cut(s)	91, 146
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	2 cut(s)	193, 292
Tru1I	TTAA	4 cut(s)	129, 359, 393, 509
Tru9I	TTAA	4 cut(s)	129, 359, 393, 509
TseFI	GTSAC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	5 cut(s)	18, 113, 155, 189, 240
Vha464I	CTTAAG	1 cut(s)	128
XapI	RAATTY	1 cut(s)	600
XspI	CTAG	1 cut(s)	260
ZrmI	AGTACT	1 cut(s)	148
Zsp2I	ATGCAT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.