Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8468527.1

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Forward (+)

302 .. 1231

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8468527.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atgagccacgagcttcatatcccagaaaggcaatctaaactctcctattgtaaggttaattgttatcccagcaagccaatagggctgtatagcaagcattctgtcatattgagatcagactcgaatactgaggatctggaaggatatgcaggtgctgggctttatgacagtgtaatcatggataaagaggaggagattgtattggattactcaagcgatcggatgatcattgataggggcttccaagcctcactcttctcaagaattgcagacacgcaaaagatattagaaggcctttatggttgtcctcaggacattgaaggtctcgtaaaagatggattgatatatgcagttcagtcaaggccacaaatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

124

Amino Acids

13.96

Weight (kDa)

4.96

Isoelectric Point (pI)

60.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	140
AclWI	GGATC	1 cut(s)	141
AgsI	TTSAA	1 cut(s)	320
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	1 cut(s)	141
AlwNI	CAGNNNCTG	1 cut(s)	155
AoxI	GGCC	2 cut(s)	292, 362
AxyI	CCTNAGG	1 cut(s)	309
BauI	CACGAG	1 cut(s)	8
BccI	CCATC	1 cut(s)	329
BclI	TGATCA	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	1 cut(s)	373
BfuAI	ACCTGC	1 cut(s)	140
BglI	GCCNNNNNGGC	1 cut(s)	82
BpuEI	CTTGAG	2 cut(s)	196, 244
BsaI	GGTCTC	1 cut(s)	329
Bse21I	CCTNAGG	1 cut(s)	309
BseGI	GGATG	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	120, 323
BseRI	GAGGAG	2 cut(s)	203, 206
BseYI	CCCAGC	2 cut(s)	68, 155
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	2 cut(s)	294, 364
BsiEI	CGRYCG	1 cut(s)	220
BsmAI	GTCTC	1 cut(s)	329
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	294, 364
Bso31I	GGTCTC	1 cut(s)	329
Bsp143I	GATC	4 cut(s)	113, 133, 217, 225
BspANI	GGCC	2 cut(s)	294, 364
BspCNI	CTCAG	2 cut(s)	121, 322
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	141
BspTNI	GGTCTC	1 cut(s)	329
BssMI	GATC	4 cut(s)	113, 133, 217, 225
BssSI	CACGAG	1 cut(s)	8
Bst2BI	CACGAG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	170
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	2 cut(s)	74, 95
BstDEI	CTNAG	2 cut(s)	129, 309
BstF5I	GGATG	1 cut(s)	228
BstKTI	GATC	4 cut(s)	116, 136, 220, 228
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	4 cut(s)	113, 133, 217, 225
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
Bsu36I	CCTNAGG	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	294, 364
BtsCI	GGATG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	175
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	2 cut(s)	74, 95
CaiI	CAGNNNCTG	1 cut(s)	155
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	9 cut(s)	6, 13, 76, 85, 160, 240, 248, 294, 364
CviKI_1	RGCY	9 cut(s)	6, 13, 76, 85, 160, 240, 248, 294, 364
DdeI	CTNAG	2 cut(s)	129, 309
DpnI	GATC	4 cut(s)	115, 135, 219, 227
DpnII	GATC	4 cut(s)	113, 133, 217, 225
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco147I	AGGCCT	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	329
Eco81I	CCTNAGG	1 cut(s)	309
FaeI	CATG	1 cut(s)	181
FaiI	YATR	9 cut(s)	18, 90, 107, 147, 165, 179, 300, 346, 348
FatI	CATG	1 cut(s)	177
FbaI	TGATCA	1 cut(s)	225
FokI	GGATG	1 cut(s)	235
FspBI	CTAG	1 cut(s)	373
GsaI	CCCAGC	2 cut(s)	72, 159
HaeIII	GGCC	2 cut(s)	294, 364
Hin1II	CATG	1 cut(s)	181
HinfI	GANTC	1 cut(s)	119
Hpy188I	TCNGA	2 cut(s)	118, 222
Hpy188III	TCNNGA	3 cut(s)	137, 261, 311
HpyAV	CCTTC	3 cut(s)	134, 284, 314
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4V	TGCA	3 cut(s)	149, 269, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	2 cut(s)	129, 309
Hsp92II	CATG	1 cut(s)	181
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	4 cut(s)	113, 133, 217, 225
LpnPI	CCDG	6 cut(s)	36, 82, 122, 135, 141, 296
MaeI	CTAG	1 cut(s)	373
MalI	GATC	4 cut(s)	115, 135, 219, 227
MboI	GATC	4 cut(s)	113, 133, 217, 225
MboII	GAAGA	1 cut(s)	247
MflI	RGATCY	1 cut(s)	133
MluCI	AATT	2 cut(s)	58, 264
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	5 cut(s)	124, 181, 184, 259, 318
MseI	TTAA	1 cut(s)	57
Mva1269I	GAATGC	1 cut(s)	97
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeII	GATC	4 cut(s)	113, 133, 217, 225
NlaIII	CATG	1 cut(s)	181
PaqCI	CACCTGC	1 cut(s)	140
PceI	AGGCCT	1 cut(s)	294
PctI	GAATGC	1 cut(s)	97
Ple19I	CGATCG	1 cut(s)	220
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
PspFI	CCCAGC	2 cut(s)	68, 155
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	133
PvuI	CGATCG	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	57
Sau3AI	GATC	4 cut(s)	113, 133, 217, 225
SchI	GAGTC	1 cut(s)	113
SetI	ASST	4 cut(s)	15, 57, 154, 325
SmlI	CTYRAG	2 cut(s)	211, 259
SmoI	CTYRAG	2 cut(s)	211, 259
Sse9I	AATT	2 cut(s)	58, 264
SseBI	AGGCCT	1 cut(s)	294
SspMI	CTAG	1 cut(s)	373
StuI	AGGCCT	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	170
TaqI	TCGA	1 cut(s)	122
TasI	AATT	2 cut(s)	58, 264
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	5
TspRI	CASTG	1 cut(s)	175
XspI	CTAG	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.