Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Reverse (-)

46982149 .. 46984862

Gene Structure 2714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG370800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGGAACAAGCATGGTCTGGGCTTCAAAGTGGAATGAGAGAGCATACTTCAGCACAAGAAAAGTGAAATTAGACCATGATTATCTTTGCATGGCTGTCCTTGTTCAAGAAATAATAAATGCCGACTATGCATTCGTTATTCACACAACTAACCCATCTTCAGGAGACTCGTCAGAGATATATGCCGGGGTTGTCAAAGGTCTTGGAGAAACCTTAGTTGGAGCTCATCCTGGACGTGCCTTAAGTTTTATTAGCAAGAAAAATGCTCTGGACTCTCCTCAGGTGTTAGGTTACCCTAGCAAACCGGTTGGCCTCTTGATCAGACGGTCCATAATCTTCCTATCCGATTCCAATGGTGAAGATCTTGAAGGTTATGCCGGTGCAGGCCTTTATGACAGTCATTGGACCTATAAGATCCGTCTTCCAAACTACATGATATATCAGAGGGCAAGCCTTCTGTATTCAAAGATGCTGGAGCCCTACTTACTTTCGGTTGGGGGCTTTATGGACATTGAATGTAGAAAGGGTGGAGAAAAAAGTACCGTAGGTGCTCAAGATGAGATTCGCTTAAAGAGGGAGGGACAGACCTCCAAGCTCCAAGCTCTGTTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009631 GO:0009941 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0031967 GO:0031975 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050521 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPDK_N

Protein Analysis

204

Amino Acids

22.64

Weight (kDa)

8.42

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPDK_N	PF01326	5 - 74	2.9e-11	Pyruvate phosphate dikinase, AMP/ATP-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	409
AcuI	CTGAAG	2 cut(s)	34, 144
AfaI	GTAC	1 cut(s)	541
AfiI	CCNNNNNNNGG	1 cut(s)	161
AflII	CTTAAG	1 cut(s)	241
AgeI	ACCGGT	1 cut(s)	304
AgsI	TTSAA	5 cut(s)	27, 107, 368, 465, 515
AjiI	CACGTC	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	229
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
AluBI	AGCT	3 cut(s)	224, 595, 602
AluI	AGCT	3 cut(s)	224, 595, 602
Alw21I	GWGCWC	2 cut(s)	226, 553
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	1 cut(s)	409
AoxI	GGCC	2 cut(s)	310, 385
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AsiGI	ACCGGT	1 cut(s)	304
AspS9I	GGNCC	2 cut(s)	327, 405
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	368
AvaII	GGWCC	2 cut(s)	327, 405
AxyI	CCTNAGG	1 cut(s)	279
BanII	GRGCYC	2 cut(s)	226, 480
BbsI	GAAGAC	1 cut(s)	413
Bbv12I	GWGCWC	2 cut(s)	226, 553
BccI	CCATC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	231
BclI	TGATCA	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	1 cut(s)	297
BfrI	CTTAAG	1 cut(s)	241
BglII	AGATCT	1 cut(s)	361
Bme1390I	CCNGG	2 cut(s)	187, 231
Bme18I	GGWCC	2 cut(s)	327, 405
BmgBI	CACGTC	1 cut(s)	236
BmgT120I	GGNCC	2 cut(s)	327, 405
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	2 cut(s)	187, 231
BmsI	GCATC	1 cut(s)	459
BpiI	GAAGAC	1 cut(s)	413
BpmI	CTGGAG	1 cut(s)	494
BpuEI	CTTGAG	1 cut(s)	537
BpuMI	CCSGG	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse118I	RCCGGY	2 cut(s)	304, 377
Bse21I	CCTNAGG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	293
BseRI	GAGGAG	1 cut(s)	267
BsgI	GTGCAG	1 cut(s)	402
BshFI	GGCC	2 cut(s)	312, 387
BshTI	ACCGGT	1 cut(s)	304
BsiHKAI	GWGCWC	2 cut(s)	226, 553
BsiSI	CCGG	3 cut(s)	186, 305, 378
BslFI	GGGAC	1 cut(s)	594
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	594
BsmI	GAATGC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	312, 387
Bsp1286I	GDGCHC	3 cut(s)	226, 480, 553
Bsp143I	GATC	3 cut(s)	318, 361, 414
BspANI	GGCC	2 cut(s)	312, 387
BspCNI	CTCAG	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	477
BspPI	GGATC	1 cut(s)	409
BspTI	CTTAAG	1 cut(s)	241
BsrFI	RCCGGY	2 cut(s)	304, 377
BssAI	RCCGGY	2 cut(s)	304, 377
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	3 cut(s)	318, 361, 414
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	3 cut(s)	327, 398, 544
BstAFI	CTTAAG	1 cut(s)	241
BstC8I	GCNNGC	2 cut(s)	385, 451
BstDEI	CTNAG	2 cut(s)	214, 279
BstEII	GGTNACC	1 cut(s)	290
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	3 cut(s)	321, 364, 417
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	3 cut(s)	318, 361, 414
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	1 cut(s)	231
BstPI	GGTNACC	1 cut(s)	290
BstSCI	CCNGG	2 cut(s)	185, 229
BstV2I	GAAGAC	1 cut(s)	413
BstX2I	RGATCY	2 cut(s)	361, 414
BstYI	RGATCY	2 cut(s)	361, 414
Bsu36I	CCTNAGG	1 cut(s)	279
BsuRI	GGCC	2 cut(s)	312, 387
BtrI	CACGTC	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	226
Cac8I	GCNNGC	2 cut(s)	385, 451
Cfr10I	RCCGGY	2 cut(s)	304, 377
Cfr13I	GGNCC	2 cut(s)	327, 405
Csp6I	GTAC	1 cut(s)	540
CspAI	ACCGGT	1 cut(s)	304
CviAII	CATG	4 cut(s)	13, 77, 91, 433
CviQI	GTAC	1 cut(s)	540
DdeI	CTNAG	2 cut(s)	214, 279
DpnI	GATC	3 cut(s)	320, 363, 416
DpnII	GATC	3 cut(s)	318, 361, 414
Ecl136II	GAGCTC	1 cut(s)	224
Eco147I	AGGCCT	1 cut(s)	387
Eco24I	GRGCYC	2 cut(s)	226, 480
Eco47I	GGWCC	2 cut(s)	327, 405
Eco53kI	GAGCTC	1 cut(s)	224
Eco57I	CTGAAG	2 cut(s)	34, 144
Eco81I	CCTNAGG	1 cut(s)	279
Eco91I	GGTNACC	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	224
EcoO65I	GGTNACC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	229
EcoT22I	ATGCAT	1 cut(s)	133
EcoT38I	GRGCYC	2 cut(s)	226, 480
FaeI	CATG	4 cut(s)	16, 80, 94, 436
FaqI	GGGAC	1 cut(s)	594
FatI	CATG	4 cut(s)	12, 76, 90, 432
FbaI	TGATCA	1 cut(s)	318
FokI	GGATG	1 cut(s)	213
FriOI	GRGCYC	2 cut(s)	226, 480
FspBI	CTAG	1 cut(s)	297
GsuI	CTGGAG	1 cut(s)	494
HaeIII	GGCC	2 cut(s)	312, 387
HapII	CCGG	3 cut(s)	186, 305, 378
Hin1II	CATG	4 cut(s)	16, 80, 94, 436
HinfI	GANTC	4 cut(s)	167, 272, 347, 562
HpaII	CCGG	3 cut(s)	186, 305, 378
HphI	GGTGA	1 cut(s)	368
Hpy188I	TCNGA	4 cut(s)	175, 323, 346, 444
Hpy188III	TCNNGA	6 cut(s)	107, 162, 269, 316, 365, 554
HpyAV	CCTTC	2 cut(s)	362, 464
HpyCH4III	ACNGT	3 cut(s)	327, 398, 544
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	3 cut(s)	90, 131, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	2 cut(s)	214, 279
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	4 cut(s)	16, 80, 94, 436
Ksp22I	TGATCA	1 cut(s)	318
Kzo9I	GATC	3 cut(s)	318, 361, 414
LmnI	GCTCC	3 cut(s)	221, 475, 600
LweI	GCATC	1 cut(s)	459
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	3 cut(s)	320, 363, 416
MboI	GATC	3 cut(s)	318, 361, 414
MboII	GAAGA	4 cut(s)	150, 328, 371, 413
MflI	RGATCY	2 cut(s)	361, 414
MhlI	GDGCHC	3 cut(s)	226, 480, 553
MluCI	AATT	1 cut(s)	68
MlyI	GAGTC	2 cut(s)	161, 266
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	6 cut(s)	288, 323, 438, 567, 571, 598
Mph1103I	ATGCAT	1 cut(s)	133
MseI	TTAA	2 cut(s)	242, 569
MspCI	CTTAAG	1 cut(s)	241
MspI	CCGG	3 cut(s)	186, 305, 378
MspR9I	CCNGG	2 cut(s)	187, 231
Mva1269I	GAATGC	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	128
NciI	CCSGG	1 cut(s)	187
NdeII	GATC	3 cut(s)	318, 361, 414
NlaIII	CATG	4 cut(s)	16, 80, 94, 436
NlaIV	GGNNCC	1 cut(s)	477
NsiI	ATGCAT	1 cut(s)	133
PceI	AGGCCT	1 cut(s)	387
PctI	GAATGC	1 cut(s)	131
PfeI	GAWTC	2 cut(s)	347, 562
PfoI	TCCNGGA	1 cut(s)	229
PinAI	ACCGGT	1 cut(s)	304
PleI	GAGTC	2 cut(s)	161, 266
PpsI	GAGTC	2 cut(s)	161, 266
Psp124BI	GAGCTC	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	229
PspEI	GGTNACC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	2 cut(s)	327, 405
PsuI	RGATCY	2 cut(s)	361, 414
RsaI	GTAC	1 cut(s)	541
RsaNI	GTAC	1 cut(s)	540
SacI	GAGCTC	1 cut(s)	226
SaqAI	TTAA	2 cut(s)	242, 569
Sau3AI	GATC	3 cut(s)	318, 361, 414
Sau96I	GGNCC	2 cut(s)	327, 405
SchI	GAGTC	2 cut(s)	161, 266
ScrFI	CCNGG	2 cut(s)	187, 231
SduI	GDGCHC	3 cut(s)	226, 480, 553
SfaNI	GCATC	1 cut(s)	459
SinI	GGWCC	2 cut(s)	327, 405
SmlI	CTYRAG	2 cut(s)	241, 552
SmoI	CTYRAG	2 cut(s)	241, 552
Sse9I	AATT	1 cut(s)	68
SseBI	AGGCCT	1 cut(s)	387
SspMI	CTAG	1 cut(s)	297
SstI	GAGCTC	1 cut(s)	226
StuI	AGGCCT	1 cut(s)	387
StyD4I	CCNGG	2 cut(s)	185, 229
TaaI	ACNGT	3 cut(s)	327, 398, 544
TaiI	ACGT	1 cut(s)	238
TasI	AATT	1 cut(s)	68
TfiI	GAWTC	2 cut(s)	347, 562
Tru1I	TTAA	2 cut(s)	242, 569
Tru9I	TTAA	2 cut(s)	242, 569
TspGWI	ACGGA	1 cut(s)	407
Vha464I	CTTAAG	1 cut(s)	241
VpaK11BI	GGWCC	2 cut(s)	327, 405
XspI	CTAG	1 cut(s)	297
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.