Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Forward (+)

41587433 .. 41602408

Gene Structure 14976 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G026740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCAAAGTTCAGGAATGCCCTGGCCTGGTGATGAGGGTGAACAACGATGGGAACAAGCATGGTTGGCTATAAAAAAGGTCTGGGCTTCAAAGTGGAATGAGAGAGCATACTTCAGCACAAGAAAAGTGAAATTAGACCATGATTATCTTTGCATGGCTGTCCTTGTTCAAGAAATAATAAATGCCGACTATGCATTCGTTATTCACACAACTAACCCATCTTCAGGAGACTCGTCGGAGATATATGCCGAGGTTGTCAAAGGTCTTGGAGAAACCTTAGTTGGAGCTTATCCTGGACGTGCCTTAAGTTTTATTAGCAAGAAAAATGCTCTGGACTCTCCTCAGGTGTTAGGTTACCCTAGCAAACCGGTTGGCCTCTTTATCAGACGGTCCATAATCTTCCGATCCGATTCCAATGGTGAAGATCTTGAAGGTTATGCCGGTGCAGGCCTTTATGACAGTTTTAATTGTTCTTTGGAATCAACATGTAGTGAATGTAGAAAGGGTGGAGAAAAAAGCACCGTAGGTGCTCAAGATGAGATTGGCTTAAAGAGGGAGGGACAGACCTCCAAGCTCCAAGCTCTGTTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009631 GO:0009941 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0031967 GO:0031975 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050521 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPDK_N

Protein Analysis

197

Amino Acids

21.71

Weight (kDa)

5.51

Isoelectric Point (pI)

51.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPDK_N	PF01326	19 - 95	4.2e-14	Pyruvate phosphate dikinase, AMP/ATP-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	399
AcuI	CTGAAG	2 cut(s)	97, 207
AfiI	CCNNNNNNNGG	2 cut(s)	26, 224
AflII	CTTAAG	1 cut(s)	304
AflIII	ACRYGT	1 cut(s)	485
AgeI	ACCGGT	1 cut(s)	367
AgsI	TTSAA	3 cut(s)	90, 170, 431
AjiI	CACGTC	1 cut(s)	299
AjnI	CCWGG	3 cut(s)	20, 25, 292
AjuI	GAANNNNNNNTTGG	2 cut(s)	264, 296
AluBI	AGCT	3 cut(s)	287, 574, 581
AluI	AGCT	3 cut(s)	287, 574, 581
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	1 cut(s)	399
AoxI	GGCC	3 cut(s)	23, 373, 448
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AsiGI	ACCGGT	1 cut(s)	367
AspS9I	GGNCC	1 cut(s)	390
AsuHPI	GGTGA	3 cut(s)	41, 50, 431
AvaII	GGWCC	1 cut(s)	390
AxyI	CCTNAGG	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	532
BccI	CCATC	2 cut(s)	42, 226
BciT130I	CCWGG	3 cut(s)	22, 27, 294
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	1 cut(s)	360
BfrI	CTTAAG	1 cut(s)	304
BglII	AGATCT	1 cut(s)	424
Bme1390I	CCNGG	3 cut(s)	22, 27, 294
Bme18I	GGWCC	1 cut(s)	390
BmgBI	CACGTC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	390
BmrFI	CCNGG	3 cut(s)	22, 27, 294
BpuEI	CTTGAG	1 cut(s)	516
BsaJI	CCNNGG	2 cut(s)	20, 249
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 224
Bse118I	RCCGGY	2 cut(s)	367, 440
Bse21I	CCTNAGG	1 cut(s)	342
BseBI	CCWGG	3 cut(s)	22, 27, 294
BseDI	CCNNGG	2 cut(s)	20, 249
BseLI	CCNNNNNNNGG	2 cut(s)	26, 224
BseMII	CTCAG	1 cut(s)	356
BseRI	GAGGAG	1 cut(s)	330
BsgI	GTGCAG	1 cut(s)	465
BshFI	GGCC	3 cut(s)	25, 375, 450
BshTI	ACCGGT	1 cut(s)	367
BsiHKAI	GWGCWC	1 cut(s)	532
BsiSI	CCGG	2 cut(s)	368, 441
BslFI	GGGAC	1 cut(s)	573
BslI	CCNNNNNNNGG	2 cut(s)	26, 224
BsmAI	GTCTC	1 cut(s)	222
BsmFI	GGGAC	1 cut(s)	573
BsmI	GAATGC	2 cut(s)	21, 194
BsnI	GGCC	3 cut(s)	25, 375, 450
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	2 cut(s)	404, 424
BspANI	GGCC	3 cut(s)	25, 375, 450
BspCNI	CTCAG	1 cut(s)	355
BspPI	GGATC	1 cut(s)	399
BspTI	CTTAAG	1 cut(s)	304
BsrFI	RCCGGY	2 cut(s)	367, 440
BssAI	RCCGGY	2 cut(s)	367, 440
BssECI	CCNNGG	2 cut(s)	20, 249
BssMI	GATC	2 cut(s)	404, 424
Bst2UI	CCWGG	3 cut(s)	22, 27, 294
Bst4CI	ACNGT	3 cut(s)	390, 461, 523
BstAFI	CTTAAG	1 cut(s)	304
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	2 cut(s)	277, 342
BstEII	GGTNACC	1 cut(s)	353
BstKTI	GATC	2 cut(s)	407, 427
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	2 cut(s)	404, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 191
BstNI	CCWGG	3 cut(s)	22, 27, 294
BstNSI	RCATGY	1 cut(s)	489
BstPI	GGTNACC	1 cut(s)	353
BstSCI	CCNGG	3 cut(s)	20, 25, 292
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
Bsu36I	CCTNAGG	1 cut(s)	342
BsuRI	GGCC	3 cut(s)	25, 375, 450
BtrI	CACGTC	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	448
Cfr10I	RCCGGY	2 cut(s)	367, 440
Cfr13I	GGNCC	1 cut(s)	390
CspAI	ACCGGT	1 cut(s)	367
CviAII	CATG	4 cut(s)	60, 140, 154, 486
DdeI	CTNAG	2 cut(s)	277, 342
DpnI	GATC	2 cut(s)	406, 426
DpnII	GATC	2 cut(s)	404, 424
Eco147I	AGGCCT	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	390
Eco57I	CTGAAG	2 cut(s)	97, 207
Eco81I	CCTNAGG	1 cut(s)	342
Eco91I	GGTNACC	1 cut(s)	353
EcoO65I	GGTNACC	1 cut(s)	353
EcoRII	CCWGG	3 cut(s)	20, 25, 292
EcoT22I	ATGCAT	1 cut(s)	196
FaeI	CATG	4 cut(s)	63, 143, 157, 489
FaqI	GGGAC	1 cut(s)	573
FatI	CATG	4 cut(s)	59, 139, 153, 485
FspBI	CTAG	1 cut(s)	360
HaeIII	GGCC	3 cut(s)	25, 375, 450
HapII	CCGG	2 cut(s)	368, 441
Hin1II	CATG	4 cut(s)	63, 143, 157, 489
HinfI	GANTC	4 cut(s)	230, 335, 410, 479
HpaII	CCGG	2 cut(s)	368, 441
HphI	GGTGA	3 cut(s)	41, 50, 431
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	4 cut(s)	238, 386, 404, 409
Hpy188III	TCNNGA	6 cut(s)	12, 170, 225, 332, 428, 533
Hpy8I	GTNNAC	1 cut(s)	41
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	1 cut(s)	425
HpyCH4III	ACNGT	3 cut(s)	390, 461, 523
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	4 cut(s)	4, 153, 194, 446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 191
HpyF3I	CTNAG	2 cut(s)	277, 342
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	4 cut(s)	63, 143, 157, 489
Kzo9I	GATC	2 cut(s)	404, 424
LmnI	GCTCC	2 cut(s)	284, 579
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	2 cut(s)	406, 426
MboI	GATC	2 cut(s)	404, 424
MboII	GAAGA	3 cut(s)	213, 391, 434
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	2 cut(s)	131, 466
MlyI	GAGTC	2 cut(s)	224, 329
MmeI	TCCRAC	2 cut(s)	216, 262
MnlI	CCTC	7 cut(s)	28, 244, 351, 386, 546, 550, 577
Mph1103I	ATGCAT	1 cut(s)	196
MseI	TTAA	3 cut(s)	305, 465, 548
MspCI	CTTAAG	1 cut(s)	304
MspI	CCGG	2 cut(s)	368, 441
MspR9I	CCNGG	3 cut(s)	22, 27, 294
Mva1269I	GAATGC	2 cut(s)	21, 194
MvaI	CCWGG	3 cut(s)	22, 27, 294
MwoI	GCNNNNNNNGC	2 cut(s)	65, 191
NdeII	GATC	2 cut(s)	404, 424
NlaIII	CATG	4 cut(s)	63, 143, 157, 489
NmeAIII	GCCGAG	1 cut(s)	274
NsiI	ATGCAT	1 cut(s)	196
NspI	RCATGY	1 cut(s)	489
PceI	AGGCCT	1 cut(s)	450
PciI	ACATGT	1 cut(s)	485
PctI	GAATGC	2 cut(s)	21, 194
PfeI	GAWTC	2 cut(s)	410, 479
PfoI	TCCNGGA	1 cut(s)	292
PinAI	ACCGGT	1 cut(s)	367
PleI	GAGTC	2 cut(s)	224, 329
PpsI	GAGTC	2 cut(s)	224, 329
PscI	ACATGT	1 cut(s)	485
Psp6I	CCWGG	3 cut(s)	20, 25, 292
PspEI	GGTNACC	1 cut(s)	353
PspGI	CCWGG	3 cut(s)	20, 25, 292
PspPI	GGNCC	1 cut(s)	390
PsuI	RGATCY	1 cut(s)	424
SaqAI	TTAA	3 cut(s)	305, 465, 548
Sau3AI	GATC	2 cut(s)	404, 424
Sau96I	GGNCC	1 cut(s)	390
SchI	GAGTC	2 cut(s)	224, 329
ScrFI	CCNGG	3 cut(s)	22, 27, 294
SduI	GDGCHC	1 cut(s)	532
SinI	GGWCC	1 cut(s)	390
SmlI	CTYRAG	2 cut(s)	304, 531
SmoI	CTYRAG	2 cut(s)	304, 531
Sse9I	AATT	2 cut(s)	131, 466
SseBI	AGGCCT	1 cut(s)	450
SspMI	CTAG	1 cut(s)	360
StuI	AGGCCT	1 cut(s)	450
StyD4I	CCNGG	3 cut(s)	20, 25, 292
TaaI	ACNGT	3 cut(s)	390, 461, 523
TaiI	ACGT	1 cut(s)	301
TasI	AATT	2 cut(s)	131, 466
TfiI	GAWTC	2 cut(s)	410, 479
Tru1I	TTAA	3 cut(s)	305, 465, 548
Tru9I	TTAA	3 cut(s)	305, 465, 548
Vha464I	CTTAAG	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	390
XceI	RCATGY	1 cut(s)	489
XspI	CTAG	1 cut(s)	360
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.