Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Forward (+)

30457226 .. 30459422

Gene Structure 2197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023959

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAGGCGAACAATGATATGTCGTTTCCAGTTTTGAAATTGGGGTGTGGGTGTTTCTCGGAGTGGTATTTGTCCGACGGTTTTTTGGTTGGTGTGGTGAGGAGTGATGGGAATGGTTGCCATCGCAGTGAAAAACTGAGAGAGAAGAGAGAGCTTCCATCTCAAGGCTGCAAATCTCCGACGCTGGCTCCAAGATTTCTCTGCCGCTGCAGCCTCAAATGGGTATTCTCTTCTCTCACTGCTCCACCTCAAAGACCGGTAGTAGTTCTTGGACGTCGACAACCCTCTTCTGTTCTTGAACCCGATCCAGTTTTACTTCAAACACCTGTTCTTGGGTCTTCTTCTGTTCTTGAATTTGATCTTGAAAGACTGGTTCCTTGGGCTTCGACTTCGGCCTCGGTGTCTCTGAAATTATTTGATGTCTTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

15.82

Weight (kDa)

8.6

Isoelectric Point (pI)

57.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	277
AccI	GTMKAC	1 cut(s)	277
AciI	CCGC	1 cut(s)	205
AclWI	GGATC	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	353
AcyI	GRCGYC	1 cut(s)	274
AfiI	CCNNNNNNNGG	3 cut(s)	164, 220, 332
AgeI	ACCGGT	1 cut(s)	256
AgsI	TTSAA	6 cut(s)	37, 299, 320, 353, 365, 427
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	1 cut(s)	299
AoxI	GGCC	1 cut(s)	393
ApeKI	GCWGC	3 cut(s)	168, 207, 210
ApoI	RAATTY	1 cut(s)	353
AsiGI	ACCGGT	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	109
BbsI	GAAGAC	2 cut(s)	330, 415
BbvI	GCAGC	3 cut(s)	155, 194, 222
BccI	CCATC	3 cut(s)	101, 129, 166
BcoDI	GTCTC	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	208
BisI	GCNGC	4 cut(s)	169, 205, 208, 211
BlsI	GCNGC	4 cut(s)	170, 206, 209, 212
BmiI	GGNNCC	2 cut(s)	189, 375
BpiI	GAAGAC	2 cut(s)	330, 415
BpuEI	CTTGAG	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	274
BsaJI	CCNNGG	2 cut(s)	377, 396
BsaWI	WCCGGW	1 cut(s)	256
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 220, 332
Bse118I	RCCGGY	1 cut(s)	256
Bse1I	ACTGG	3 cut(s)	29, 308, 375
BseDI	CCNNGG	2 cut(s)	377, 396
BseLI	CCNNNNNNNGG	3 cut(s)	164, 220, 332
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	3 cut(s)	29, 308, 375
BseRI	GAGGAG	1 cut(s)	115
BseXI	GCAGC	3 cut(s)	155, 194, 222
BshFI	GGCC	1 cut(s)	395
BshTI	ACCGGT	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	3 cut(s)	164, 220, 332
BsmAI	GTCTC	1 cut(s)	408
BsnI	GGCC	1 cut(s)	395
Bsp143I	GATC	2 cut(s)	304, 358
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	189, 375
BspMAI	CTGCAG	1 cut(s)	212
BspPI	GGATC	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	256
BsrI	ACTGG	3 cut(s)	29, 308, 375
BssAI	RCCGGY	1 cut(s)	256
BssECI	CCNNGG	2 cut(s)	377, 396
BssMI	GATC	2 cut(s)	304, 358
BssNI	GRCGYC	1 cut(s)	274
BssT1I	CCWWGG	1 cut(s)	377
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	3 cut(s)	140, 235, 292
BstACI	GRCGYC	1 cut(s)	274
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	137
BstKTI	GATC	2 cut(s)	307, 361
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	2 cut(s)	304, 358
BstMWI	GCNNNNNNNGC	1 cut(s)	210
BstSFI	CTRYAG	1 cut(s)	208
BstV1I	GCAGC	3 cut(s)	155, 194, 222
BstV2I	GAAGAC	2 cut(s)	330, 415
BsuRI	GGCC	1 cut(s)	395
BtgZI	GCGATG	1 cut(s)	107
BtsI	GCAGTG	2 cut(s)	133, 237
BtsIMutI	CAGTG	2 cut(s)	133, 237
Cac8I	GCNNGC	1 cut(s)	186
Cfr10I	RCCGGY	1 cut(s)	256
CseI	GACGC	1 cut(s)	190
CspAI	ACCGGT	1 cut(s)	256
CviJI	RGCY	6 cut(s)	154, 168, 188, 213, 383, 395
CviKI_1	RGCY	6 cut(s)	154, 168, 188, 213, 383, 395
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	2 cut(s)	306, 360
DpnII	GATC	2 cut(s)	304, 358
Eam1104I	CTCTTC	3 cut(s)	140, 235, 292
EarI	CTCTTC	3 cut(s)	140, 235, 292
Eco130I	CCWWGG	1 cut(s)	377
EcoT14I	CCWWGG	1 cut(s)	377
ErhI	CCWWGG	1 cut(s)	377
FaiI	YATR	1 cut(s)	20
FblI	GTMKAC	1 cut(s)	277
Fnu4HI	GCNGC	4 cut(s)	169, 205, 208, 211
Fsp4HI	GCNGC	4 cut(s)	169, 205, 208, 211
GluI	GCNGC	4 cut(s)	169, 205, 208, 211
HaeIII	GGCC	1 cut(s)	395
HapII	CCGG	1 cut(s)	257
HgaI	GACGC	1 cut(s)	190
Hin1I	GRCGYC	1 cut(s)	274
HincII	GTYRAC	1 cut(s)	278
HindII	GTYRAC	1 cut(s)	278
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	4 cut(s)	61, 76, 180, 408
Hpy188III	TCNNGA	3 cut(s)	296, 350, 362
Hpy8I	GTNNAC	1 cut(s)	278
Hpy99I	CGWCG	3 cut(s)	80, 184, 279
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	2 cut(s)	171, 210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	210
HpyF3I	CTNAG	1 cut(s)	137
HpySE526I	ACGT	1 cut(s)	274
Hsp92I	GRCGYC	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	304, 358
LmnI	GCTCC	2 cut(s)	193, 247
LpnPI	CCDG	6 cut(s)	42, 170, 270, 321, 339, 356
Lsp1109I	GCAGC	3 cut(s)	155, 194, 222
MaeII	ACGT	1 cut(s)	274
MalI	GATC	2 cut(s)	306, 360
MboI	GATC	2 cut(s)	304, 358
MboII	GAAGA	6 cut(s)	157, 222, 279, 330, 333, 415
MluCI	AATT	3 cut(s)	38, 353, 410
MmeI	TCCRAC	2 cut(s)	99, 203
MnlI	CCTC	5 cut(s)	93, 224, 258, 295, 406
MslI	CAYNNNNRTG	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	207
MspI	CCGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	210
NdeII	GATC	2 cut(s)	304, 358
NlaIV	GGNNCC	2 cut(s)	189, 375
PinAI	ACCGGT	1 cut(s)	256
PkrI	GCNGC	4 cut(s)	170, 206, 209, 212
PspN4I	GGNNCC	2 cut(s)	189, 375
PstI	CTGCAG	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	126
SalI	GTCGAC	1 cut(s)	276
SatI	GCNGC	4 cut(s)	169, 205, 208, 211
Sau3AI	GATC	2 cut(s)	304, 358
SetI	ASST	4 cut(s)	156, 250, 277, 328
SfcI	CTRYAG	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	162
SmoI	CTYRAG	1 cut(s)	162
Sse9I	AATT	3 cut(s)	38, 353, 410
SsiI	CCGC	1 cut(s)	205
StyI	CCWWGG	1 cut(s)	377
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	2 cut(s)	277, 386
TasI	AATT	3 cut(s)	38, 353, 410
TauI	GCSGC	1 cut(s)	207
TscAI	CASTG	2 cut(s)	133, 244
TseI	GCWGC	3 cut(s)	168, 207, 210
TspRI	CASTG	2 cut(s)	133, 244
XapI	RAATTY	1 cut(s)	353
XmiI	GTMKAC	1 cut(s)	277
ZraI	GACGTC	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.