Rh1DG123700

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
22454456 .. 22455711
1256 bp
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UTR
Exon/CDS
Intron
Rh1DG123700.1

Sequence Viewer

Length: 366 bp
ATGGGTCTAGACTTTGTTTATAGCATGATTTTGATGTTTTGGCAGGGATTTGGGTATTTGTTTCTGGTGGCTGCAGAATATTTGGTTCAGGGCGATGGGCTACGGACATCTTTATGTAGAAGTACTTCTTTTTGCAGTCACTTTCTATTCTCCCAGAAAAGTTACAAGCCCCCTAAGAAGCCTTTAACAGAGAAGAGTCCTCTATTCTCCCAGAAGAGTCCTCTGTTCATTGTGGCAGAGTCTTATGGAGGCAAATTTGCAGCGACTCTTGGACTTTCAGCTATAAAAGCCATTGAAGAAGGAACACTAAAGCTTAGACTTGGAGCTTTCATGGGGTCCTCTTCTCAAAGACGTTTCAAGGATTGA

Protein Analysis

121

Amino Acids

13.5

Weight (kDa)

9.61

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 254
AfaI GTAC 1 cut(s) 124
AgsI TTSAA 2 cut(s) 296, 358
AluBI AGCT 3 cut(s) 281, 313, 326
AluI AGCT 3 cut(s) 281, 313, 326
ApeKI GCWGC 2 cut(s) 71, 260
ApoI RAATTY 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 336
AvaII GGWCC 1 cut(s) 336
BarI GAAGNNNNNNTAC 2 cut(s) 109, 141
BbvI GCAGC 2 cut(s) 58, 272
BccI CCATC 1 cut(s) 89
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 72
BisI GCNGC 2 cut(s) 72, 261
BlsI GCNGC 2 cut(s) 73, 262
BmcAI AGTACT 1 cut(s) 124
Bme18I GGWCC 1 cut(s) 336
BmgT120I GGNCC 1 cut(s) 336
BmiI GGNNCC 1 cut(s) 337
BseXI GCAGC 2 cut(s) 58, 272
BspLI GGNNCC 1 cut(s) 337
BspMAI CTGCAG 1 cut(s) 76
Bst6I CTCTTC 3 cut(s) 188, 209, 346
BstDEI CTNAG 2 cut(s) 174, 314
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstSFI CTRYAG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 58, 272
BtgZI GCGATG 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 336
Csp6I GTAC 1 cut(s) 123
CviAII CATG 2 cut(s) 25, 331
CviJI RGCY 8 cut(s) 71, 100, 169, 181, 281, 290, 313, 326
CviKI_1 RGCY 8 cut(s) 71, 100, 169, 181, 281, 290, 313, 326
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 2 cut(s) 174, 314
Eam1104I CTCTTC 3 cut(s) 188, 209, 346
EarI CTCTTC 3 cut(s) 188, 209, 346
Eco47I GGWCC 1 cut(s) 336
EcoO109I RGGNCCY 1 cut(s) 336
FaeI CATG 2 cut(s) 28, 334
FaiI YATR 6 cut(s) 21, 26, 115, 246, 284, 332
FalI AAGNNNNNCTT 2 cut(s) 112, 144
FatI CATG 2 cut(s) 24, 330
Fnu4HI GCNGC 2 cut(s) 72, 261
Fsp4HI GCNGC 2 cut(s) 72, 261
FspBI CTAG 1 cut(s) 8
GluI GCNGC 2 cut(s) 72, 261
Hin1II CATG 2 cut(s) 28, 334
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 4 cut(s) 196, 217, 239, 265
Hpy188III TCNNGA 1 cut(s) 8
HpyAV CCTTC 1 cut(s) 293
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 3 cut(s) 74, 135, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 2 cut(s) 174, 314
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 2 cut(s) 28, 334
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 5 cut(s) 29, 50, 74, 167, 224
Lsp1109I GCAGC 2 cut(s) 58, 272
MaeI CTAG 1 cut(s) 8
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 2 cut(s) 137, 161
MboII GAAGA 4 cut(s) 205, 226, 308, 333
MluCI AATT 1 cut(s) 254
MlyI GAGTC 4 cut(s) 205, 226, 248, 259
MnlI CCTC 4 cut(s) 210, 231, 242, 349
MroXI GAANNNNTTC 1 cut(s) 124
MseI TTAA 1 cut(s) 185
MslI CAYNNNNRTG 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 287
NlaIII CATG 2 cut(s) 28, 334
NlaIV GGNNCC 1 cut(s) 337
NmuCI GTSAC 1 cut(s) 137
PdmI GAANNNNTTC 1 cut(s) 124
PkrI GCNGC 2 cut(s) 73, 262
PleI GAGTC 4 cut(s) 204, 225, 247, 259
PpsI GAGTC 4 cut(s) 204, 225, 247, 259
PpuMI RGGWCCY 1 cut(s) 336
Psp5II RGGWCCY 1 cut(s) 336
PspN4I GGNNCC 1 cut(s) 337
PspPI GGNCC 1 cut(s) 336
PspPPI RGGWCCY 1 cut(s) 336
PstI CTGCAG 1 cut(s) 76
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 112
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 2 cut(s) 72, 261
Sau96I GGNCC 1 cut(s) 336
ScaI AGTACT 1 cut(s) 124
SchI GAGTC 4 cut(s) 205, 226, 248, 259
SetI ASST 4 cut(s) 283, 315, 328, 355
SfcI CTRYAG 1 cut(s) 72
SinI GGWCC 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 112
Sse9I AATT 1 cut(s) 254
SspI AATATT 1 cut(s) 80
SspMI CTAG 1 cut(s) 8
TaiI ACGT 1 cut(s) 355
TasI AATT 1 cut(s) 254
TatI WGTACW 1 cut(s) 122
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 2 cut(s) 71, 260
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 2 cut(s) 217, 319
TspGWI ACGGA 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 336
XapI RAATTY 1 cut(s) 254
XbaI TCTAGA 1 cut(s) 7
XmnI GAANNNNTTC 1 cut(s) 124
XspI CTAG 1 cut(s) 8
ZrmI AGTACT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.