Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Reverse (-)

12364117 .. 12366100

Gene Structure 1984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001227

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGGAATATATGCATGCATGGGTGTAGTGATTCAAGAAATCATATGTGCCGATTATGCCGTTGTTATTCACACAAAGAATCCATTATCAGGGAATACTGCAGGAATTTACACAGAGATAGTTAAAGGCTTGGAAGAGACTTTCGTGGGTGCGTATCCTGGACGAGCCATGAGATCCATAACCCAGAAATCCAATCTAAACTCTCCTCTTTCTTTGACACGCTCTCGCTCTACAGGCTGCAAATTTCCGACGCCGACTCCGAGATCTCTTTGCCGCCGCAGCCGCAAATGGGTATTCTCTTCTCTCACTTCTCCACCTCAAAGACCGGTAGTAGTTCTTGGACGTCGACAACCCTCTTCTGTTCTTGAACCCGATCCAGTTTTACTTCAAACACCGGTTCTTGGGTCTTCTTCTGTTCTTGAATTTGATCTTGAAAGACTGGTTCCTTGGGCTTCGACTTCGGCCTCGGTGTCTCTGAAATTATTTGATGTCTTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

167

Amino Acids

18.16

Weight (kDa)

9.69

Isoelectric Point (pI)

64.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	346
AccI	GTMKAC	1 cut(s)	346
AciI	CCGC	3 cut(s)	274, 277, 283
AclWI	GGATC	2 cut(s)	168, 368
AcsI	RAATTY	3 cut(s)	105, 242, 422
AcyI	GRCGYC	2 cut(s)	251, 343
AfiI	CCNNNNNNNGG	3 cut(s)	89, 289, 401
AgeI	ACCGGT	2 cut(s)	325, 394
AgsI	TTSAA	6 cut(s)	35, 368, 389, 422, 434, 496
AjnI	CCWGG	1 cut(s)	157
Alw26I	GTCTC	2 cut(s)	131, 477
AlwI	GGATC	2 cut(s)	168, 368
AoxI	GGCC	1 cut(s)	462
ApeKI	GCWGC	2 cut(s)	237, 279
ApoI	RAATTY	3 cut(s)	105, 242, 422
AsiGI	ACCGGT	2 cut(s)	325, 394
BbsI	GAAGAC	2 cut(s)	399, 484
BbvI	GCAGC	2 cut(s)	224, 291
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	159
BciVI	GTATCC	1 cut(s)	165
BcoDI	GTCTC	2 cut(s)	131, 477
BfmI	CTRYAG	2 cut(s)	99, 231
BfuI	GTATCC	1 cut(s)	165
BglII	AGATCT	1 cut(s)	263
BisI	GCNGC	5 cut(s)	238, 274, 277, 280, 283
BlsI	GCNGC	5 cut(s)	239, 275, 278, 281, 284
Bme1390I	CCNGG	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	444
BmrFI	CCNGG	1 cut(s)	159
BpiI	GAAGAC	2 cut(s)	399, 484
BsaHI	GRCGYC	2 cut(s)	251, 343
BsaJI	CCNNGG	2 cut(s)	446, 465
BsaWI	WCCGGW	2 cut(s)	325, 394
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 289, 401
Bse118I	RCCGGY	2 cut(s)	325, 394
Bse1I	ACTGG	2 cut(s)	377, 444
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	446, 465
BseLI	CCNNNNNNNGG	3 cut(s)	89, 289, 401
BseNI	ACTGG	2 cut(s)	377, 444
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	2 cut(s)	224, 291
BshFI	GGCC	1 cut(s)	464
BshTI	ACCGGT	2 cut(s)	325, 394
BsiSI	CCGG	2 cut(s)	326, 395
BslI	CCNNNNNNNGG	3 cut(s)	89, 289, 401
BsmAI	GTCTC	2 cut(s)	131, 477
BsnI	GGCC	1 cut(s)	464
Bsp143I	GATC	4 cut(s)	173, 263, 373, 427
BspACI	CCGC	3 cut(s)	274, 277, 283
BspANI	GGCC	1 cut(s)	464
BspLI	GGNNCC	1 cut(s)	444
BspMAI	CTGCAG	1 cut(s)	103
BspPI	GGATC	2 cut(s)	168, 368
BsrFI	RCCGGY	2 cut(s)	325, 394
BsrI	ACTGG	2 cut(s)	377, 444
BssAI	RCCGGY	2 cut(s)	325, 394
BssECI	CCNNGG	2 cut(s)	446, 465
BssMI	GATC	4 cut(s)	173, 263, 373, 427
BssNI	GRCGYC	2 cut(s)	251, 343
BssT1I	CCWWGG	1 cut(s)	446
Bst2UI	CCWGG	1 cut(s)	159
Bst6I	CTCTTC	3 cut(s)	129, 304, 361
BstACI	GRCGYC	2 cut(s)	251, 343
BstC8I	GCNNGC	1 cut(s)	16
BstKTI	GATC	4 cut(s)	176, 266, 376, 430
BstMAI	GTCTC	2 cut(s)	131, 477
BstMBI	GATC	4 cut(s)	173, 263, 373, 427
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 234, 279, 282
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	157
BstSFI	CTRYAG	2 cut(s)	99, 231
BstV1I	GCAGC	2 cut(s)	224, 291
BstV2I	GAAGAC	2 cut(s)	399, 484
BstX2I	RGATCY	2 cut(s)	173, 263
BstYI	RGATCY	2 cut(s)	173, 263
BsuI	GTATCC	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	464
Cac8I	GCNNGC	1 cut(s)	16
Cfr10I	RCCGGY	2 cut(s)	325, 394
CseI	GACGC	1 cut(s)	259
CspAI	ACCGGT	2 cut(s)	325, 394
CviAII	CATG	3 cut(s)	15, 19, 169
CviJI	RGCY	6 cut(s)	129, 167, 237, 282, 452, 464
CviKI_1	RGCY	6 cut(s)	129, 167, 237, 282, 452, 464
DpnI	GATC	4 cut(s)	175, 265, 375, 429
DpnII	GATC	4 cut(s)	173, 263, 373, 427
Eam1104I	CTCTTC	3 cut(s)	129, 304, 361
EarI	CTCTTC	3 cut(s)	129, 304, 361
Eco130I	CCWWGG	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	446
EcoT22I	ATGCAT	2 cut(s)	16, 20
ErhI	CCWWGG	1 cut(s)	446
FaeI	CATG	3 cut(s)	18, 22, 172
FaiI	YATR	9 cut(s)	10, 12, 16, 20, 44, 46, 57, 170, 179
FatI	CATG	3 cut(s)	14, 18, 168
FauNDI	CATATG	1 cut(s)	44
FblI	GTMKAC	1 cut(s)	346
Fnu4HI	GCNGC	5 cut(s)	238, 274, 277, 280, 283
Fsp4HI	GCNGC	5 cut(s)	238, 274, 277, 280, 283
GluI	GCNGC	5 cut(s)	238, 274, 277, 280, 283
HaeIII	GGCC	1 cut(s)	464
HapII	CCGG	2 cut(s)	326, 395
HgaI	GACGC	1 cut(s)	259
Hin1I	GRCGYC	2 cut(s)	251, 343
Hin1II	CATG	3 cut(s)	18, 22, 172
HincII	GTYRAC	1 cut(s)	347
HindII	GTYRAC	1 cut(s)	347
HinfI	GANTC	3 cut(s)	31, 79, 256
HpaII	CCGG	2 cut(s)	326, 395
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	3 cut(s)	249, 261, 477
Hpy188III	TCNNGA	4 cut(s)	35, 365, 419, 431
Hpy8I	GTNNAC	1 cut(s)	347
Hpy99I	CGWCG	2 cut(s)	253, 348
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	4 cut(s)	14, 18, 101, 240
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 234, 279, 282
HpySE526I	ACGT	1 cut(s)	343
Hsp92I	GRCGYC	2 cut(s)	251, 343
Hsp92II	CATG	3 cut(s)	18, 22, 172
Kzo9I	GATC	4 cut(s)	173, 263, 373, 427
Lsp1109I	GCAGC	2 cut(s)	224, 291
MaeII	ACGT	1 cut(s)	343
MalI	GATC	4 cut(s)	175, 265, 375, 429
MboI	GATC	4 cut(s)	173, 263, 373, 427
MboII	GAAGA	6 cut(s)	146, 291, 348, 399, 402, 484
MflI	RGATCY	2 cut(s)	173, 263
MluCI	AATT	4 cut(s)	105, 242, 422, 479
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	4 cut(s)	216, 327, 364, 475
Mph1103I	ATGCAT	2 cut(s)	16, 20
MseI	TTAA	1 cut(s)	123
MspI	CCGG	2 cut(s)	326, 395
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	4 cut(s)	56, 234, 279, 282
NdeI	CATATG	1 cut(s)	44
NdeII	GATC	4 cut(s)	173, 263, 373, 427
NlaIII	CATG	3 cut(s)	18, 22, 172
NlaIV	GGNNCC	1 cut(s)	444
NsiI	ATGCAT	2 cut(s)	16, 20
NspI	RCATGY	1 cut(s)	18
PaeI	GCATGC	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	31, 79
PfoI	TCCNGGA	1 cut(s)	157
PinAI	ACCGGT	2 cut(s)	325, 394
PkrI	GCNGC	5 cut(s)	239, 275, 278, 281, 284
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	444
PstI	CTGCAG	1 cut(s)	103
PsuI	RGATCY	2 cut(s)	173, 263
SalI	GTCGAC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	5 cut(s)	238, 274, 277, 280, 283
Sau3AI	GATC	4 cut(s)	173, 263, 373, 427
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	2 cut(s)	319, 346
SfcI	CTRYAG	2 cut(s)	99, 231
SphI	GCATGC	1 cut(s)	18
Sse9I	AATT	4 cut(s)	105, 242, 422, 479
SsiI	CCGC	3 cut(s)	274, 277, 283
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	1 cut(s)	446
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	2 cut(s)	346, 455
TasI	AATT	4 cut(s)	105, 242, 422, 479
TauI	GCSGC	3 cut(s)	276, 279, 285
TfiI	GAWTC	2 cut(s)	31, 79
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseI	GCWGC	2 cut(s)	237, 279
XapI	RAATTY	3 cut(s)	105, 242, 422
XceI	RCATGY	1 cut(s)	18
XmiI	GTMKAC	1 cut(s)	346
ZraI	GACGTC	1 cut(s)	344
Zsp2I	ATGCAT	2 cut(s)	16, 20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.