Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011456.1

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Reverse (-)

14040 .. 15957

Gene Structure 1918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011456.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgccaccaagtcgttgctccgagatccgaaccaaccttcctccaaggagtttatcctcctcgattggtgcgacttcgagcaccaaatgccagcatggttctaaagctcacctctctctctccccttcccgctctcccgcaaccccgctctcctctctctctcgcacgacgccttttctttcttcgacggtgcaagagctgaagactaagatgcaaagttcaggaatgccttggcctggtgatgagggtgaacaacgatgggaacaagcatggttggctataaaaaaggtctgggcttcaaagtggaatgacagagcatacttcagcacaagaaaagtgaaattagaccatgattatctttgcatggctgtccttgttcaagaaataataaatgtcgactatgcattcgttattcacacaactaacccatcttcaggagactcgtcggagatatatgccgaggttgtcaaaggtcttggagaaaccttagttggagcttatcctggacgtgccttaagttttattagcaagaaaaatgctctggactctcctcaggtaatgcactacagtgccaaaagtggcataagagtaacagaccatgtagggattgaattgcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009631 GO:0009941 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0031967 GO:0031975 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050521 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPDK_N

Protein Analysis

206

Amino Acids

22.65

Weight (kDa)

9.13

Isoelectric Point (pI)

61.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	132, 148
AccI	GTMKAC	1 cut(s)	396
AciI	CCGC	3 cut(s)	130, 138, 146
AclWI	GGATC	1 cut(s)	19
AcuI	CTGAAG	3 cut(s)	221, 307, 417
AcyI	GRCGYC	1 cut(s)	170
AfiI	CCNNNNNNNGG	2 cut(s)	236, 434
AflII	CTTAAG	1 cut(s)	514
AgsI	TTSAA	3 cut(s)	300, 380, 611
AjiI	CACGTC	1 cut(s)	509
AjnI	CCWGG	2 cut(s)	235, 502
AjuI	GAANNNNNNNTTGG	2 cut(s)	474, 506
AleI	CACNNNNGTG	1 cut(s)	567
AloI	GAACNNNNNNTCC	2 cut(s)	22, 54
AluBI	AGCT	3 cut(s)	107, 199, 497
AluI	AGCT	3 cut(s)	107, 199, 497
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	432
AlwI	GGATC	1 cut(s)	19
AoxI	GGCC	1 cut(s)	233
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
AsuHPI	GGTGA	3 cut(s)	101, 251, 260
AxyI	CCTNAGG	1 cut(s)	552
BbsI	GAAGAC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	83
BccI	CCATC	2 cut(s)	252, 436
BciT130I	CCWGG	2 cut(s)	237, 504
BcoDI	GTCTC	1 cut(s)	432
BfmI	CTRYAG	1 cut(s)	565
BfrI	CTTAAG	1 cut(s)	514
Bme1390I	CCNGG	2 cut(s)	237, 504
BmgBI	CACGTC	1 cut(s)	509
BmrFI	CCNGG	2 cut(s)	237, 504
BmsI	GCATC	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	209
BsaHI	GRCGYC	1 cut(s)	170
BsaJI	CCNNGG	3 cut(s)	44, 230, 459
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 434
Bse21I	CCTNAGG	1 cut(s)	552
BseBI	CCWGG	2 cut(s)	237, 504
BseDI	CCNNGG	3 cut(s)	44, 230, 459
BseLI	CCNNNNNNNGG	2 cut(s)	236, 434
BseMII	CTCAG	1 cut(s)	566
BseRI	GAGGAG	3 cut(s)	49, 142, 540
BshFI	GGCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	83
BslI	CCNNNNNNNGG	2 cut(s)	236, 434
BsmAI	GTCTC	1 cut(s)	432
BsmI	GAATGC	2 cut(s)	231, 404
BsnI	GGCC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	3 cut(s)	130, 138, 146
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	565
BspPI	GGATC	1 cut(s)	19
BspTI	CTTAAG	1 cut(s)	514
BsrBI	CCGCTC	2 cut(s)	132, 148
BssECI	CCNNGG	3 cut(s)	44, 230, 459
BssMI	GATC	1 cut(s)	24
BssNI	GRCGYC	1 cut(s)	170
BssT1I	CCWWGG	2 cut(s)	44, 230
Bst2UI	CCWGG	2 cut(s)	237, 504
Bst4CI	ACNGT	2 cut(s)	190, 569
BstACI	GRCGYC	1 cut(s)	170
BstAFI	CTTAAG	1 cut(s)	514
BstAPI	GCANNNNNTGC	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	3 cut(s)	207, 487, 552
BstKTI	GATC	1 cut(s)	27
BstMAI	GTCTC	1 cut(s)	432
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 275
BstNI	CCWGG	2 cut(s)	237, 504
BstSCI	CCNGG	2 cut(s)	235, 502
BstSFI	CTRYAG	1 cut(s)	565
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	1 cut(s)	24
BstYI	RGATCY	1 cut(s)	24
Bsu36I	CCTNAGG	1 cut(s)	552
BsuRI	GGCC	1 cut(s)	235
BtrI	CACGTC	1 cut(s)	509
BtsIMutI	CAGTG	1 cut(s)	574
Cac8I	GCNNGC	1 cut(s)	92
CseI	GACGC	1 cut(s)	178
CviAII	CATG	5 cut(s)	95, 270, 350, 364, 599
CviJI	RGCY	7 cut(s)	107, 199, 235, 278, 296, 368, 497
CviKI_1	RGCY	7 cut(s)	107, 199, 235, 278, 296, 368, 497
DdeI	CTNAG	3 cut(s)	207, 487, 552
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
Eco130I	CCWWGG	2 cut(s)	44, 230
Eco57I	CTGAAG	3 cut(s)	221, 307, 417
Eco81I	CCTNAGG	1 cut(s)	552
EcoRII	CCWGG	2 cut(s)	235, 502
EcoT14I	CCWWGG	2 cut(s)	44, 230
EcoT22I	ATGCAT	1 cut(s)	406
ErhI	CCWWGG	2 cut(s)	44, 230
FaeI	CATG	5 cut(s)	98, 273, 353, 367, 602
FatI	CATG	5 cut(s)	94, 269, 349, 363, 598
FauI	CCCGC	3 cut(s)	137, 145, 153
FblI	GTMKAC	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	235
HgaI	GACGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	170
Hin1II	CATG	5 cut(s)	98, 273, 353, 367, 602
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HinfI	GANTC	2 cut(s)	440, 545
HphI	GGTGA	3 cut(s)	101, 251, 260
Hpy166II	GTNNAC	2 cut(s)	251, 397
Hpy188I	TCNGA	3 cut(s)	22, 29, 448
Hpy188III	TCNNGA	4 cut(s)	222, 380, 435, 542
Hpy8I	GTNNAC	2 cut(s)	251, 397
Hpy99I	CGWCG	3 cut(s)	172, 190, 448
HpyAV	CCTTC	2 cut(s)	47, 135
HpyCH4III	ACNGT	2 cut(s)	190, 569
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	6 cut(s)	193, 214, 363, 404, 562, 616
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 275
HpyF3I	CTNAG	3 cut(s)	207, 487, 552
HpySE526I	ACGT	1 cut(s)	508
Hsp92I	GRCGYC	1 cut(s)	170
Hsp92II	CATG	5 cut(s)	98, 273, 353, 367, 602
Kzo9I	GATC	1 cut(s)	24
LmnI	GCTCC	2 cut(s)	23, 494
LweI	GCATC	1 cut(s)	201
MaeII	ACGT	1 cut(s)	508
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	1 cut(s)	26
MbiI	CCGCTC	2 cut(s)	132, 148
MboI	GATC	1 cut(s)	24
MboII	GAAGA	3 cut(s)	174, 214, 423
MflI	RGATCY	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	2 cut(s)	341, 611
MlyI	GAGTC	2 cut(s)	434, 539
MmeI	TCCRAC	2 cut(s)	426, 472
MnlI	CCTC	8 cut(s)	51, 67, 70, 122, 163, 238, 454, 561
Mph1103I	ATGCAT	1 cut(s)	406
MseI	TTAA	1 cut(s)	515
MslI	CAYNNNNRTG	1 cut(s)	567
MspCI	CTTAAG	1 cut(s)	514
MspR9I	CCNGG	2 cut(s)	237, 504
Mva1269I	GAATGC	2 cut(s)	231, 404
MvaI	CCWGG	2 cut(s)	237, 504
MwoI	GCNNNNNNNGC	2 cut(s)	87, 275
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	5 cut(s)	98, 273, 353, 367, 602
NmeAIII	GCCGAG	1 cut(s)	484
NsiI	ATGCAT	1 cut(s)	406
OliI	CACNNNNGTG	1 cut(s)	567
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PctI	GAATGC	2 cut(s)	231, 404
PfoI	TCCNGGA	1 cut(s)	502
PleI	GAGTC	2 cut(s)	434, 539
PpsI	GAGTC	2 cut(s)	434, 539
Psp6I	CCWGG	2 cut(s)	235, 502
PspGI	CCWGG	2 cut(s)	235, 502
PsuI	RGATCY	1 cut(s)	24
RseI	CAYNNNNRTG	1 cut(s)	567
SalI	GTCGAC	1 cut(s)	395
SaqAI	TTAA	1 cut(s)	515
Sau3AI	GATC	1 cut(s)	24
SchI	GAGTC	2 cut(s)	434, 539
ScrFI	CCNGG	2 cut(s)	237, 504
SduI	GDGCHC	1 cut(s)	83
SfaNI	GCATC	1 cut(s)	201
SfcI	CTRYAG	1 cut(s)	565
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	1 cut(s)	514
SmoI	CTYRAG	1 cut(s)	514
Sse9I	AATT	2 cut(s)	341, 611
SsiI	CCGC	3 cut(s)	130, 138, 146
StyD4I	CCNGG	2 cut(s)	235, 502
StyI	CCWWGG	2 cut(s)	44, 230
TaaI	ACNGT	2 cut(s)	190, 569
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	4 cut(s)	62, 77, 185, 396
TasI	AATT	2 cut(s)	341, 611
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TscAI	CASTG	1 cut(s)	574
TspRI	CASTG	1 cut(s)	574
Vha464I	CTTAAG	1 cut(s)	514
XmiI	GTMKAC	1 cut(s)	396
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.