Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Reverse (-)

10373304 .. 10376524

Gene Structure 3221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00226730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAGTCTTGCCGAGTCTCCACTACACTCTTCTAGCAGTGATGCCTTTGCCGGGTTGCTTGAGAGAGAACTAGGCTCCGGTTCTTCCGAGCCATCACCAGAGGAAGAAGATGAAGAAGATAAAGAAGCTGATGATGTTGAAAGTGAGACCAGGATAAAAAGGCGTAGGGGAGATAATTTGGAAAGCGTAGAGGATACTAATGGGTCGACCTTAAAAGTACTTTCAGAACAAAACCCAGAAGCATCTGCAATGGAGGATATGTGTGCACATCCTGGGTCATGTGGAGATCTGTGTTTTCTTTGTGGCCAGAGGTTGATTGAGCAGTCTGGTGTGACATTTGGGTACATACTCAAGAGAGGGAAGATTATCAGGCAGAAATTTGTGCACGACTACAAGACTCTGATAGTTAAGGGCTTGGGAGAGACTTTGGTGGGTGCATATCCTGAACGAGCCATGAGCTTCATAACCCAGAAAGCCAATCTAAACTCTCTTATCGTTAATTGTTATCCAAGCAAACCAATAGGGCTGTATAGCAAGCAGTCTGTCATATTCAGAACAGACTCGAATGCTGAGGTTCTGGAAGGATATGCAGGTGCTGGGCTTCATGACAGTGTAATTATGGATGAAGAGGAGAAGATTGTGTGGGATTACTCAAGCGATCGGATGATCTTTGATAGGGGCTTCCAAGTCTCACTCTTCTCAAGAATTGCAGACGTTTGGAAGATATTAGAAGGCCTTTATGGTTGTCCTCAGGACATTGAGGGTGTGGTAAAAGATGGATTGATATACGTAGTTCAGTCAAGGCCACAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

271

Amino Acids

30.02

Weight (kDa)

4.66

Isoelectric Point (pI)

54.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	581
Acc36I	ACCTGC	1 cut(s)	581
AccI	GTMKAC	1 cut(s)	206
AcoI	YGGCCR	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	377
AfaI	GTAC	2 cut(s)	219, 344
AfiI	CCNNNNNNNGG	1 cut(s)	51
AgsI	TTSAA	1 cut(s)	140
AjnI	CCWGG	2 cut(s)	149, 271
AluBI	AGCT	2 cut(s)	128, 459
AluI	AGCT	2 cut(s)	128, 459
Alw21I	GWGCWC	2 cut(s)	268, 387
Alw26I	GTCTC	4 cut(s)	21, 140, 416, 694
Alw44I	GTGCAC	2 cut(s)	264, 383
AlwNI	CAGNNNCTG	1 cut(s)	596
AoxI	GGCC	3 cut(s)	304, 733, 803
ApaLI	GTGCAC	2 cut(s)	264, 383
ApoI	RAATTY	1 cut(s)	377
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	87
AxyI	CCTNAGG	1 cut(s)	750
BaeGI	GKGCMC	2 cut(s)	268, 387
BalI	TGGCCA	1 cut(s)	306
Bbv12I	GWGCWC	2 cut(s)	268, 387
BbvCI	CCTCAGC	1 cut(s)	570
BccI	CCATC	2 cut(s)	100, 770
BciT130I	CCWGG	2 cut(s)	151, 273
BciVI	GTATCC	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	4 cut(s)	21, 140, 416, 694
BfaI	CTAG	3 cut(s)	33, 71, 814
BfuAI	ACCTGC	1 cut(s)	581
BfuI	GTATCC	1 cut(s)	187
BglII	AGATCT	1 cut(s)	286
BmcAI	AGTACT	1 cut(s)	219
Bme1390I	CCNGG	3 cut(s)	52, 151, 273
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	3 cut(s)	52, 151, 273
BmsI	GCATC	2 cut(s)	31, 251
Bpu10I	CCTNAGC	1 cut(s)	570
BpuEI	CTTGAG	4 cut(s)	80, 335, 637, 685
BpuMI	CCSGG	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	790
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	272
BsaWI	WCCGGW	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse21I	CCTNAGG	1 cut(s)	750
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	2 cut(s)	151, 273
BseDI	CCNNGG	1 cut(s)	272
BseGI	GGATG	3 cut(s)	268, 628, 669
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	561, 764
BseRI	GAGGAG	1 cut(s)	644
BseSI	GKGCMC	2 cut(s)	268, 387
BseYI	CCCAGC	1 cut(s)	596
Bsh1285I	CGRYCG	1 cut(s)	661
BshFI	GGCC	3 cut(s)	306, 735, 805
BsiEI	CGRYCG	1 cut(s)	661
BsiHKAI	GWGCWC	2 cut(s)	268, 387
BsiSI	CCGG	2 cut(s)	51, 78
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	4 cut(s)	21, 140, 416, 694
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	3 cut(s)	306, 735, 805
Bso31I	GGTCTC	1 cut(s)	140
Bsp1286I	GDGCHC	2 cut(s)	268, 387
Bsp143I	GATC	3 cut(s)	286, 658, 666
BspANI	GGCC	3 cut(s)	306, 735, 805
BspCNI	CTCAG	2 cut(s)	562, 763
BspHI	TCATGA	1 cut(s)	604
BspLI	GGNNCC	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	581
BspTNI	GGTCTC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	272
BssMI	GATC	3 cut(s)	286, 658, 666
Bst2UI	CCWGG	2 cut(s)	151, 273
Bst4CI	ACNGT	1 cut(s)	611
Bst6I	CTCTTC	3 cut(s)	34, 621, 701
BstBAI	YACGTR	1 cut(s)	790
BstC8I	GCNNGC	1 cut(s)	536
BstDEI	CTNAG	2 cut(s)	570, 750
BstF5I	GGATG	3 cut(s)	268, 628, 669
BstKTI	GATC	3 cut(s)	289, 661, 669
BstMAI	GTCTC	4 cut(s)	21, 140, 416, 694
BstMBI	GATC	3 cut(s)	286, 658, 666
BstMCI	CGRYCG	1 cut(s)	661
BstNI	CCWGG	2 cut(s)	151, 273
BstSCI	CCNGG	3 cut(s)	50, 149, 271
BstSLI	GKGCMC	2 cut(s)	268, 387
BstSNI	TACGTA	1 cut(s)	790
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
Bsu36I	CCTNAGG	1 cut(s)	750
BsuI	GTATCC	1 cut(s)	187
BsuRI	GGCC	3 cut(s)	306, 735, 805
BtsCI	GGATG	3 cut(s)	268, 628, 669
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	2 cut(s)	43, 616
BveI	ACCTGC	1 cut(s)	581
Cac8I	GCNNGC	1 cut(s)	536
CaiI	CAGNNNCTG	1 cut(s)	596
CciI	TCATGA	1 cut(s)	604
Csp6I	GTAC	2 cut(s)	218, 343
CviAII	CATG	3 cut(s)	279, 454, 605
CviQI	GTAC	2 cut(s)	218, 343
DdeI	CTNAG	2 cut(s)	570, 750
DpnI	GATC	3 cut(s)	288, 660, 668
DpnII	GATC	3 cut(s)	286, 658, 666
EaeI	YGGCCR	1 cut(s)	304
Eam1104I	CTCTTC	3 cut(s)	34, 621, 701
EarI	CTCTTC	3 cut(s)	34, 621, 701
Eco105I	TACGTA	1 cut(s)	790
Eco147I	AGGCCT	1 cut(s)	735
Eco31I	GGTCTC	1 cut(s)	140
Eco81I	CCTNAGG	1 cut(s)	750
EcoRII	CCWGG	2 cut(s)	149, 271
FaeI	CATG	3 cut(s)	282, 457, 608
FatI	CATG	3 cut(s)	278, 453, 604
FblI	GTMKAC	1 cut(s)	206
FokI	GGATG	3 cut(s)	255, 635, 676
FspBI	CTAG	3 cut(s)	33, 71, 814
GsaI	CCCAGC	1 cut(s)	600
HaeIII	GGCC	3 cut(s)	306, 735, 805
HapII	CCGG	2 cut(s)	51, 78
Hin1II	CATG	3 cut(s)	282, 457, 608
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HinfI	GANTC	4 cut(s)	4, 14, 397, 560
HpaII	CCGG	2 cut(s)	51, 78
HphI	GGTGA	1 cut(s)	87
Hpy166II	GTNNAC	3 cut(s)	207, 266, 385
Hpy188I	TCNGA	5 cut(s)	88, 226, 402, 554, 663
Hpy188III	TCNNGA	6 cut(s)	352, 443, 578, 605, 702, 752
Hpy8I	GTNNAC	3 cut(s)	207, 266, 385
HpyAV	CCTTC	2 cut(s)	575, 725
HpyCH4III	ACNGT	1 cut(s)	611
HpyCH4IV	ACGT	2 cut(s)	714, 789
HpyCH4V	TGCA	6 cut(s)	248, 266, 385, 437, 590, 710
HpyF3I	CTNAG	2 cut(s)	570, 750
HpySE526I	ACGT	2 cut(s)	714, 789
Hsp92II	CATG	3 cut(s)	282, 457, 608
Kzo9I	GATC	3 cut(s)	286, 658, 666
LmnI	GCTCC	1 cut(s)	80
LweI	GCATC	2 cut(s)	31, 251
MaeI	CTAG	3 cut(s)	33, 71, 814
MaeII	ACGT	2 cut(s)	714, 789
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	3 cut(s)	288, 660, 668
MboI	GATC	3 cut(s)	286, 658, 666
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	2 cut(s)	268, 387
MlsI	TGGCCA	1 cut(s)	306
MluCI	AATT	5 cut(s)	175, 377, 499, 615, 705
MluNI	TGGCCA	1 cut(s)	306
MlyI	GAGTC	4 cut(s)	13, 23, 391, 554
MnlI	CCTC	9 cut(s)	94, 184, 247, 303, 350, 565, 622, 754, 759
Mox20I	TGGCCA	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	306
MseI	TTAA	3 cut(s)	212, 408, 498
MslI	CAYNNNNRTG	1 cut(s)	609
Msp20I	TGGCCA	1 cut(s)	306
MspI	CCGG	2 cut(s)	51, 78
MspR9I	CCNGG	3 cut(s)	52, 151, 273
Mva1269I	GAATGC	1 cut(s)	571
MvaI	CCWGG	2 cut(s)	151, 273
NciI	CCSGG	1 cut(s)	52
NdeII	GATC	3 cut(s)	286, 658, 666
NlaIII	CATG	3 cut(s)	282, 457, 608
NlaIV	GGNNCC	1 cut(s)	76
NmeAIII	GCCGAG	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	331
PagI	TCATGA	1 cut(s)	604
PaqCI	CACCTGC	1 cut(s)	581
PceI	AGGCCT	1 cut(s)	735
PctI	GAATGC	1 cut(s)	571
Ple19I	CGATCG	1 cut(s)	661
PleI	GAGTC	4 cut(s)	12, 22, 391, 554
PpsI	GAGTC	4 cut(s)	12, 22, 391, 554
Ppu21I	YACGTR	1 cut(s)	790
Psp6I	CCWGG	2 cut(s)	149, 271
PspFI	CCCAGC	1 cut(s)	596
PspGI	CCWGG	2 cut(s)	149, 271
PspN4I	GGNNCC	1 cut(s)	76
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	1 cut(s)	286
PvuI	CGATCG	1 cut(s)	661
RsaI	GTAC	2 cut(s)	219, 344
RsaNI	GTAC	2 cut(s)	218, 343
RseI	CAYNNNNRTG	1 cut(s)	609
SalI	GTCGAC	1 cut(s)	205
SaqAI	TTAA	3 cut(s)	212, 408, 498
Sau3AI	GATC	3 cut(s)	286, 658, 666
ScaI	AGTACT	1 cut(s)	219
SchI	GAGTC	4 cut(s)	13, 23, 391, 554
ScrFI	CCNGG	3 cut(s)	52, 151, 273
SduI	GDGCHC	2 cut(s)	268, 387
SetI	ASST	8 cut(s)	130, 212, 314, 461, 576, 595, 717, 792
SfaNI	GCATC	2 cut(s)	31, 251
SmiMI	CAYNNNNRTG	1 cut(s)	609
SmlI	CTYRAG	4 cut(s)	59, 350, 652, 700
SmoI	CTYRAG	4 cut(s)	59, 350, 652, 700
SnaBI	TACGTA	1 cut(s)	790
Sse9I	AATT	5 cut(s)	175, 377, 499, 615, 705
SseBI	AGGCCT	1 cut(s)	735
SspMI	CTAG	3 cut(s)	33, 71, 814
StuI	AGGCCT	1 cut(s)	735
StyD4I	CCNGG	3 cut(s)	50, 149, 271
TaaI	ACNGT	1 cut(s)	611
TaiI	ACGT	2 cut(s)	717, 792
TaqI	TCGA	2 cut(s)	206, 563
TasI	AATT	5 cut(s)	175, 377, 499, 615, 705
TatI	WGTACW	1 cut(s)	217
Tru1I	TTAA	3 cut(s)	212, 408, 498
Tru9I	TTAA	3 cut(s)	212, 408, 498
TscAI	CASTG	2 cut(s)	43, 616
TseFI	GTSAC	1 cut(s)	331
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	4 cut(s)	126, 451, 593, 639
TspRI	CASTG	2 cut(s)	43, 616
VneI	GTGCAC	2 cut(s)	264, 383
XapI	RAATTY	1 cut(s)	377
XmiI	GTMKAC	1 cut(s)	206
XspI	CTAG	3 cut(s)	33, 71, 814
ZrmI	AGTACT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.