Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Reverse (-)

72201732 .. 72205578

Gene Structure 3847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG516500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGGGAATAACCATGAGTATGATATGGCAGTTAAAGTTGAAAATGTGAAAGAGCTGAAGACTAAGATGCAAAGTTCAGGAATGCCTTGGCCTGGTGATGAGGGTGAACAACGATGGGAACAAGCATGGTTGGCTATAAAAAATGTCTGGGCTTCAAAGTGGAATGAGAGAGCATACTTCAGCACAAGAAAAGTGAAATTAGACCATGATTATCTTTGCATGGCTGTCCTTGTTCAAGAAATAATAAATGCCGACTATGCATTCATTATTCACACAACTAACCCATCTTCAGGAGACTCGTCGGAGATATATGCCGAGGTTGTCAAAGGTCTTGGAGAAACCTTAGTTGGAGCTTATCCTGGACGTGCCTTAAGTTTTATTAGCAAGAAAAATGCTCTGGACTCTCCTCAGGTGTTAGGTTACCCTAGCAAACCGGTTGGCCTCTTTATCAGACGATCCATAATCTTCCGATCCGATTCCAATGGTGAAGATCTTGAAGGTTATGCCGGTGCAGGCCTTTATGACAGATGCTGGAGCCCTACTTACTTTCGGTTGGGAGCTTTATGGACAGGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009631 GO:0009941 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0031967 GO:0031975 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050521 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPDK_N

Protein Analysis

192

Amino Acids

21.59

Weight (kDa)

5.95

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPDK_N	PF01326	41 - 117	2.5e-13	Pyruvate phosphate dikinase, AMP/ATP-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	450, 465
AcuI	CTGAAG	3 cut(s)	77, 163, 273
AfiI	CCNNNNNNNGG	2 cut(s)	92, 290
AflII	CTTAAG	1 cut(s)	370
AgeI	ACCGGT	1 cut(s)	433
AgsI	TTSAA	4 cut(s)	41, 156, 236, 497
AjiI	CACGTC	1 cut(s)	365
AjnI	CCWGG	2 cut(s)	91, 358
AjuI	GAANNNNNNNTTGG	2 cut(s)	330, 362
AluBI	AGCT	3 cut(s)	55, 353, 560
AluI	AGCT	3 cut(s)	55, 353, 560
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	2 cut(s)	450, 465
AlwNI	CAGNNNCTG	1 cut(s)	531
AoxI	GGCC	3 cut(s)	89, 439, 514
AsiGI	ACCGGT	1 cut(s)	433
AsuHPI	GGTGA	3 cut(s)	107, 116, 497
AxyI	CCTNAGG	1 cut(s)	408
BanII	GRGCYC	1 cut(s)	539
BbsI	GAAGAC	1 cut(s)	65
BccI	CCATC	2 cut(s)	108, 292
BciT130I	CCWGG	2 cut(s)	93, 360
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	1 cut(s)	426
BfrI	CTTAAG	1 cut(s)	370
BglII	AGATCT	1 cut(s)	490
Bme1390I	CCNGG	2 cut(s)	93, 360
BmgBI	CACGTC	1 cut(s)	365
BmiI	GGNNCC	1 cut(s)	536
BmrFI	CCNGG	2 cut(s)	93, 360
BmsI	GCATC	2 cut(s)	57, 518
BpiI	GAAGAC	1 cut(s)	65
BpmI	CTGGAG	1 cut(s)	553
BsaJI	CCNNGG	2 cut(s)	86, 315
BsaWI	WCCGGW	1 cut(s)	433
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 290
Bse118I	RCCGGY	2 cut(s)	433, 506
Bse21I	CCTNAGG	1 cut(s)	408
BseBI	CCWGG	2 cut(s)	93, 360
BseDI	CCNNGG	2 cut(s)	86, 315
BseLI	CCNNNNNNNGG	2 cut(s)	92, 290
BseMII	CTCAG	1 cut(s)	422
BseRI	GAGGAG	1 cut(s)	396
BsgI	GTGCAG	1 cut(s)	531
BshFI	GGCC	3 cut(s)	91, 441, 516
BshTI	ACCGGT	1 cut(s)	433
BsiSI	CCGG	2 cut(s)	434, 507
BslI	CCNNNNNNNGG	2 cut(s)	92, 290
BsmAI	GTCTC	1 cut(s)	288
BsmI	GAATGC	2 cut(s)	87, 260
BsnI	GGCC	3 cut(s)	91, 441, 516
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp143I	GATC	3 cut(s)	455, 470, 490
BspANI	GGCC	3 cut(s)	91, 441, 516
BspCNI	CTCAG	1 cut(s)	421
BspLI	GGNNCC	1 cut(s)	536
BspPI	GGATC	2 cut(s)	450, 465
BspTI	CTTAAG	1 cut(s)	370
BsrFI	RCCGGY	2 cut(s)	433, 506
BssAI	RCCGGY	2 cut(s)	433, 506
BssECI	CCNNGG	2 cut(s)	86, 315
BssMI	GATC	3 cut(s)	455, 470, 490
BssT1I	CCWWGG	1 cut(s)	86
Bst2UI	CCWGG	2 cut(s)	93, 360
BstAFI	CTTAAG	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	514
BstDEI	CTNAG	3 cut(s)	63, 343, 408
BstEII	GGTNACC	1 cut(s)	419
BstKTI	GATC	3 cut(s)	458, 473, 493
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	3 cut(s)	455, 470, 490
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 257
BstNI	CCWGG	2 cut(s)	93, 360
BstPI	GGTNACC	1 cut(s)	419
BstSCI	CCNGG	2 cut(s)	91, 358
BstV2I	GAAGAC	1 cut(s)	65
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
Bsu36I	CCTNAGG	1 cut(s)	408
BsuRI	GGCC	3 cut(s)	91, 441, 516
BtrI	CACGTC	1 cut(s)	365
Cac8I	GCNNGC	1 cut(s)	514
CaiI	CAGNNNCTG	1 cut(s)	531
Cfr10I	RCCGGY	2 cut(s)	433, 506
CspAI	ACCGGT	1 cut(s)	433
CviAII	CATG	4 cut(s)	14, 126, 206, 220
DdeI	CTNAG	3 cut(s)	63, 343, 408
DpnI	GATC	3 cut(s)	457, 472, 492
DpnII	GATC	3 cut(s)	455, 470, 490
Eco130I	CCWWGG	1 cut(s)	86
Eco147I	AGGCCT	1 cut(s)	516
Eco24I	GRGCYC	1 cut(s)	539
Eco57I	CTGAAG	3 cut(s)	77, 163, 273
Eco81I	CCTNAGG	1 cut(s)	408
Eco91I	GGTNACC	1 cut(s)	419
EcoO65I	GGTNACC	1 cut(s)	419
EcoRII	CCWGG	2 cut(s)	91, 358
EcoT14I	CCWWGG	1 cut(s)	86
EcoT22I	ATGCAT	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	539
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	4 cut(s)	17, 129, 209, 223
FatI	CATG	4 cut(s)	13, 125, 205, 219
FriOI	GRGCYC	1 cut(s)	539
FspBI	CTAG	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	553
HaeIII	GGCC	3 cut(s)	91, 441, 516
HapII	CCGG	2 cut(s)	434, 507
Hin1II	CATG	4 cut(s)	17, 129, 209, 223
HinfI	GANTC	3 cut(s)	296, 401, 476
HpaII	CCGG	2 cut(s)	434, 507
HphI	GGTGA	3 cut(s)	107, 116, 497
Hpy166II	GTNNAC	1 cut(s)	107
Hpy188I	TCNGA	4 cut(s)	304, 452, 470, 475
Hpy188III	TCNNGA	5 cut(s)	78, 236, 291, 398, 494
Hpy8I	GTNNAC	1 cut(s)	107
Hpy99I	CGWCG	1 cut(s)	304
HpyAV	CCTTC	1 cut(s)	491
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	4 cut(s)	70, 219, 260, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 257
HpyF3I	CTNAG	3 cut(s)	63, 343, 408
HpySE526I	ACGT	1 cut(s)	364
Hsp92II	CATG	4 cut(s)	17, 129, 209, 223
Kzo9I	GATC	3 cut(s)	455, 470, 490
LmnI	GCTCC	3 cut(s)	350, 534, 557
LweI	GCATC	2 cut(s)	57, 518
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	3 cut(s)	457, 472, 492
MboI	GATC	3 cut(s)	455, 470, 490
MboII	GAAGA	4 cut(s)	70, 279, 457, 500
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	1 cut(s)	539
MluCI	AATT	1 cut(s)	197
MlyI	GAGTC	2 cut(s)	290, 395
MmeI	TCCRAC	2 cut(s)	282, 328
MnlI	CCTC	4 cut(s)	94, 310, 417, 452
Mph1103I	ATGCAT	1 cut(s)	262
MseI	TTAA	2 cut(s)	33, 371
MslI	CAYNNNNRTG	1 cut(s)	18
MspCI	CTTAAG	1 cut(s)	370
MspI	CCGG	2 cut(s)	434, 507
MspR9I	CCNGG	2 cut(s)	93, 360
Mva1269I	GAATGC	2 cut(s)	87, 260
MvaI	CCWGG	2 cut(s)	93, 360
MwoI	GCNNNNNNNGC	2 cut(s)	131, 257
NdeII	GATC	3 cut(s)	455, 470, 490
NlaIII	CATG	4 cut(s)	17, 129, 209, 223
NlaIV	GGNNCC	1 cut(s)	536
NmeAIII	GCCGAG	1 cut(s)	340
NsiI	ATGCAT	1 cut(s)	262
PceI	AGGCCT	1 cut(s)	516
PctI	GAATGC	2 cut(s)	87, 260
PfeI	GAWTC	1 cut(s)	476
PfoI	TCCNGGA	1 cut(s)	358
PinAI	ACCGGT	1 cut(s)	433
PleI	GAGTC	2 cut(s)	290, 395
PpsI	GAGTC	2 cut(s)	290, 395
Psp6I	CCWGG	2 cut(s)	91, 358
PspEI	GGTNACC	1 cut(s)	419
PspGI	CCWGG	2 cut(s)	91, 358
PspN4I	GGNNCC	1 cut(s)	536
PstNI	CAGNNNCTG	1 cut(s)	531
PsuI	RGATCY	1 cut(s)	490
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	33, 371
Sau3AI	GATC	3 cut(s)	455, 470, 490
SchI	GAGTC	2 cut(s)	290, 395
ScrFI	CCNGG	2 cut(s)	93, 360
SduI	GDGCHC	1 cut(s)	539
SfaNI	GCATC	2 cut(s)	57, 518
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	370
SmoI	CTYRAG	1 cut(s)	370
Sse9I	AATT	1 cut(s)	197
SseBI	AGGCCT	1 cut(s)	516
SspMI	CTAG	1 cut(s)	426
StuI	AGGCCT	1 cut(s)	516
StyD4I	CCNGG	2 cut(s)	91, 358
StyI	CCWWGG	1 cut(s)	86
TaiI	ACGT	1 cut(s)	367
TasI	AATT	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	2 cut(s)	33, 371
Tru9I	TTAA	2 cut(s)	33, 371
TspDTI	ATGAA	1 cut(s)	253
Vha464I	CTTAAG	1 cut(s)	370
XspI	CTAG	1 cut(s)	426
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.