Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Reverse (-)

22743365 .. 22747090

Gene Structure 3726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00302360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTCCGGGATAGTTTCGATCAACAAATCTCTCTTGTTTGGCCTTTTTCTTGCAGGACATCTTTTTGTAGAAGTACTTCTTTTTGCAGTCGTTGTTTTTCTATTCTCCCGGAAAAGTTACAAGCCCCCTAAGAAGCCTTTAACAGAGAAGGTTTGTGTGAAAGTTTTATGCCAGTGCTTGCGTAAAGTGTGTGATTCATGGAGCTTATTTGTGGAATTTCCACCGAGTGGACAAGCTATAAATCGATCATCTTGCAAGAAAAGAAAAGTTTCATTGAATGGGTCGAGTTTCTATGGAGCAGTGAATGGGAAAAAGAACAAGCATGTGCTGAGGCCATCTAGTTCATACTCGCTGTATCCGTCGACCCAAAGCGGTAAGATTACCTTGGAGGAAGCTCGTCTCATCTATGTCCCGAATGCCAAGCATCCTTATCTTCCTCCCGAACATTACATGTACAAGGCCATCGAAAGGTCGTCGTTAAAGGTCGCGATCACAAAAAGGCGCCTTAGTCTTTCCCTCCATGATCACCGCCGTCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LINES_C LINES_N

Protein Analysis

179

Amino Acids

20.26

Weight (kDa)

10.11

Isoelectric Point (pI)

61.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	501
AccB7I	CCANNNNNTGG	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	362
AccII	CGCG	1 cut(s)	488
AciI	CCGC	2 cut(s)	372, 529
AcsI	RAATTY	1 cut(s)	215
AcyI	GRCGYC	1 cut(s)	502
AdeI	CACNNNGTG	1 cut(s)	227
AfaI	GTAC	2 cut(s)	75, 455
AfiI	CCNNNNNNNGG	2 cut(s)	227, 468
AflIII	ACRYGT	1 cut(s)	450
AgsI	TTSAA	1 cut(s)	277
AluBI	AGCT	3 cut(s)	204, 236, 395
AluI	AGCT	3 cut(s)	204, 236, 395
Alw26I	GTCTC	1 cut(s)	404
AoxI	GGCC	3 cut(s)	40, 332, 459
ApoI	RAATTY	1 cut(s)	215
Asp700I	GAANNNNTTC	2 cut(s)	75, 268
AspLEI	GCGC	1 cut(s)	504
AsuC2I	CCSGG	2 cut(s)	7, 109
AsuHPI	GGTGA	1 cut(s)	518
BanI	GGYRCC	1 cut(s)	501
BarI	GAAGNNNNNNTAC	2 cut(s)	60, 92
BbvCI	CCTCAGC	1 cut(s)	329
BccI	CCATC	2 cut(s)	343, 470
BceAI	ACGGC	1 cut(s)	516
BcgI	CGANNNNNNTGC	2 cut(s)	234, 268
BciVI	GTATCC	1 cut(s)	366
BclI	TGATCA	1 cut(s)	523
BcnI	CCSGG	2 cut(s)	7, 109
BcoDI	GTCTC	1 cut(s)	404
BfaI	CTAG	1 cut(s)	339
BfoI	RGCGCY	1 cut(s)	505
BfuI	GTATCC	1 cut(s)	366
BmcAI	AGTACT	1 cut(s)	75
Bme1390I	CCNGG	2 cut(s)	7, 109
BmiI	GGNNCC	1 cut(s)	503
BmrFI	CCNGG	2 cut(s)	7, 109
BmsI	GCATC	1 cut(s)	433
Bpu10I	CCTNAGC	1 cut(s)	329
BpuMI	CCSGG	2 cut(s)	7, 109
Bsa29I	ATCGAT	1 cut(s)	244
BsaHI	GRCGYC	1 cut(s)	502
BsaJI	CCNNGG	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 468
Bse1I	ACTGG	1 cut(s)	172
BseCI	ATCGAT	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	2 cut(s)	227, 468
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	488
BshFI	GGCC	3 cut(s)	42, 334, 461
BshNI	GGYRCC	1 cut(s)	501
BshVI	ATCGAT	1 cut(s)	244
BsiSI	CCGG	2 cut(s)	6, 109
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	227, 468
BsmAI	GTCTC	1 cut(s)	404
BsmBI	CGTCTC	1 cut(s)	404
BsmFI	GGGAC	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	3 cut(s)	42, 334, 461
Bsp1407I	TGTACA	1 cut(s)	453
Bsp143I	GATC	4 cut(s)	18, 245, 489, 523
Bsp68I	TCGCGA	1 cut(s)	488
BspACI	CCGC	2 cut(s)	372, 529
BspANI	GGCC	3 cut(s)	42, 334, 461
BspCNI	CTCAG	1 cut(s)	321
BspDI	ATCGAT	1 cut(s)	244
BspFNI	CGCG	1 cut(s)	488
BspLI	GGNNCC	1 cut(s)	503
BspT107I	GGYRCC	1 cut(s)	501
BsrGI	TGTACA	1 cut(s)	453
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	4 cut(s)	18, 245, 489, 523
BssNI	GRCGYC	1 cut(s)	502
BssT1I	CCWWGG	1 cut(s)	384
BstACI	GRCGYC	1 cut(s)	502
BstAUI	TGTACA	1 cut(s)	453
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	3 cut(s)	129, 329, 506
BstF5I	GGATG	1 cut(s)	424
BstFNI	CGCG	1 cut(s)	488
BstH2I	RGCGCY	1 cut(s)	505
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	4 cut(s)	21, 248, 492, 526
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	4 cut(s)	18, 245, 489, 523
BstNSI	RCATGY	2 cut(s)	326, 454
BstSCI	CCNGG	2 cut(s)	5, 107
BstUI	CGCG	1 cut(s)	488
Bsu15I	ATCGAT	1 cut(s)	244
BsuI	GTATCC	1 cut(s)	366
BsuRI	GGCC	3 cut(s)	42, 334, 461
BsuTUI	ATCGAT	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	424
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	179, 306
BtuMI	TCGCGA	1 cut(s)	488
Cac8I	GCNNGC	1 cut(s)	179
CfoI	GCGC	1 cut(s)	504
ClaI	ATCGAT	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	74, 454
CviAII	CATG	4 cut(s)	198, 323, 451, 521
CviJI	RGCY	8 cut(s)	42, 124, 136, 204, 236, 334, 395, 461
CviKI_1	RGCY	8 cut(s)	42, 124, 136, 204, 236, 334, 395, 461
CviQI	GTAC	2 cut(s)	74, 454
DdeI	CTNAG	3 cut(s)	129, 329, 506
DinI	GGCGCC	1 cut(s)	503
DpnI	GATC	4 cut(s)	20, 247, 491, 525
DpnII	GATC	4 cut(s)	18, 245, 489, 523
DraIII	CACNNNGTG	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	384
EgeI	GGCGCC	1 cut(s)	503
EheI	GGCGCC	1 cut(s)	503
ErhI	CCWWGG	1 cut(s)	384
Esp3I	CGTCTC	1 cut(s)	404
FaeI	CATG	4 cut(s)	201, 326, 454, 524
FaiI	YATR	9 cut(s)	169, 199, 239, 294, 324, 346, 408, 452, 522
FalI	AAGNNNNNCTT	4 cut(s)	63, 95, 368, 400
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	4 cut(s)	197, 322, 450, 520
FbaI	TGATCA	1 cut(s)	523
FblI	GTMKAC	1 cut(s)	362
FokI	GGATG	1 cut(s)	411
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	1 cut(s)	503
HaeII	RGCGCY	1 cut(s)	505
HaeIII	GGCC	3 cut(s)	42, 334, 461
HapII	CCGG	2 cut(s)	6, 109
HhaI	GCGC	1 cut(s)	504
Hin1I	GRCGYC	1 cut(s)	502
Hin1II	CATG	4 cut(s)	201, 326, 454, 524
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HincII	GTYRAC	1 cut(s)	363
HindII	GTYRAC	1 cut(s)	363
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	2 cut(s)	6, 109
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	2 cut(s)	230, 363
Hpy188III	TCNNGA	3 cut(s)	412, 440, 487
Hpy8I	GTNNAC	2 cut(s)	230, 363
Hpy99I	CGWCG	2 cut(s)	364, 478
HpyAV	CCTTC	1 cut(s)	142
HpyCH4V	TGCA	3 cut(s)	53, 86, 255
HpyF3I	CTNAG	3 cut(s)	129, 329, 506
Hsp92I	GRCGYC	1 cut(s)	502
Hsp92II	CATG	4 cut(s)	201, 326, 454, 524
HspAI	GCGC	1 cut(s)	502
KasI	GGCGCC	1 cut(s)	501
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	4 cut(s)	18, 245, 489, 523
LmnI	GCTCC	2 cut(s)	201, 296
LpnPI	CCDG	4 cut(s)	19, 39, 122, 185
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	1 cut(s)	339
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	4 cut(s)	20, 247, 491, 525
MboI	GATC	4 cut(s)	18, 245, 489, 523
MboII	GAAGA	1 cut(s)	425
MluCI	AATT	1 cut(s)	215
Mly113I	GGCGCC	1 cut(s)	502
MnlI	CCTC	4 cut(s)	324, 382, 447, 527
MroXI	GAANNNNTTC	2 cut(s)	75, 268
MseI	TTAA	2 cut(s)	140, 479
MspI	CCGG	2 cut(s)	6, 109
MspR9I	CCNGG	2 cut(s)	7, 109
Mva1269I	GAATGC	1 cut(s)	421
MvnI	CGCG	1 cut(s)	488
NarI	GGCGCC	1 cut(s)	502
NciI	CCSGG	2 cut(s)	7, 109
NdeII	GATC	4 cut(s)	18, 245, 489, 523
NlaIII	CATG	4 cut(s)	201, 326, 454, 524
NlaIV	GGNNCC	1 cut(s)	503
NruI	TCGCGA	1 cut(s)	488
NspI	RCATGY	2 cut(s)	326, 454
PciI	ACATGT	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	356
PctI	GAATGC	1 cut(s)	421
PdmI	GAANNNNTTC	2 cut(s)	75, 268
PfeI	GAWTC	1 cut(s)	194
PflMI	CCANNNNNTGG	1 cut(s)	227
PfoI	TCCNGGA	2 cut(s)	5, 107
PluTI	GGCGCC	1 cut(s)	505
PscI	ACATGT	1 cut(s)	450
PspN4I	GGNNCC	1 cut(s)	503
RruI	TCGCGA	1 cut(s)	488
RsaI	GTAC	2 cut(s)	75, 455
RsaNI	GTAC	2 cut(s)	74, 454
SalI	GTCGAC	1 cut(s)	361
SaqAI	TTAA	2 cut(s)	140, 479
Sau3AI	GATC	4 cut(s)	18, 245, 489, 523
ScaI	AGTACT	1 cut(s)	75
ScrFI	CCNGG	2 cut(s)	7, 109
SetI	ASST	7 cut(s)	153, 206, 238, 386, 397, 473, 486
SfaNI	GCATC	1 cut(s)	433
SfoI	GGCGCC	1 cut(s)	503
Sse9I	AATT	1 cut(s)	215
SsiI	CCGC	2 cut(s)	372, 529
SspDI	GGCGCC	1 cut(s)	501
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	2 cut(s)	5, 107
StyI	CCWWGG	1 cut(s)	384
TaqI	TCGA	5 cut(s)	17, 244, 284, 362, 465
TasI	AATT	1 cut(s)	215
TatI	WGTACW	2 cut(s)	73, 453
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	2 cut(s)	140, 479
Tru9I	TTAA	2 cut(s)	140, 479
TscAI	CASTG	2 cut(s)	179, 306
TspDTI	ATGAA	3 cut(s)	186, 261, 333
TspGWI	ACGGA	2 cut(s)	348, 525
TspRI	CASTG	2 cut(s)	179, 306
Van91I	CCANNNNNTGG	1 cut(s)	227
XapI	RAATTY	1 cut(s)	215
XceI	RCATGY	2 cut(s)	326, 454
XmiI	GTMKAC	1 cut(s)	362
XmnI	GAANNNNTTC	2 cut(s)	75, 268
XspI	CTAG	1 cut(s)	339
ZrmI	AGTACT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.