Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Forward (+)

50087449 .. 50092581

Gene Structure 5133 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG356100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGACCAGACTGGGTTGTTCTGAGCGGACTGAAGAGGCTGGGCGAAACAAGCACAGCGTCGATCTGGGCAGAGACGGCGTCTCCGGACGCGAAGTCGAATTGGGCAGCAGGGAGAGAAGAGCGACGCGGCTTGGGCTCGTTCTTGGTCATTTTGGTTCACTTGGGGAGATTCGAGAGACAGGTTTACAGTTGACAGCACCACCTCCGTTGGTGCAAGAGTTGAAGACTAAGATGCAAAGTTTAGGAATGCCTTGGCCTGGTGATGAGGGTGAACAACGATGGGAACAAGCATGGTTGGCTATAAAAAAGGTCTGGGCTTCAAAGTGGAATGAGAGAGCATACTTCAGCACAAGAAAAGTGAAATTAGACCATGATTATCTTTGCATGGCTGTCCTTGTTCAAGAAATAATAAATGCCGACTATGCATTCGTTATTCACACAACTAACCCATCTTCAGGAGACTCGTCGGAGATATATGCCGAGGTTGTCAAAGGTCTTGGAGAAACCTTAGTTAGAGCTTATCCTGGACGTGCCTTAAGTTTTATTAGCAAGAAAAATGCTCTGGACTCTCCTCACGTAATGCACTACAGTGCCAAAAGTGGCATAAGACTAACAGACCATGTAGGGATTGAATTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009631 GO:0009941 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0031967 GO:0031975 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050521 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPDK_N

Protein Analysis

213

Amino Acids

23.78

Weight (kDa)

7.83

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPDK_N	PF01326	96 - 172	2.4e-14	Pyruvate phosphate dikinase, AMP/ATP-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	25
AccII	CGCG	2 cut(s)	90, 127
AccIII	TCCGGA	1 cut(s)	83
AciI	CCGC	2 cut(s)	25, 127
AcuI	CTGAAG	3 cut(s)	51, 328, 438
AcyI	GRCGYC	1 cut(s)	78
AfiI	CCNNNNNNNGG	2 cut(s)	257, 455
AflII	CTTAAG	1 cut(s)	535
AgsI	TTSAA	4 cut(s)	223, 321, 401, 632
AhdI	GACNNNNNGTC	1 cut(s)	92
AjiI	CACGTC	1 cut(s)	530
AjnI	CCWGG	2 cut(s)	256, 523
AleI	CACNNNNGTG	1 cut(s)	588
AluBI	AGCT	1 cut(s)	518
AluI	AGCT	1 cut(s)	518
Alw26I	GTCTC	4 cut(s)	66, 85, 170, 453
Aor13HI	TCCGGA	1 cut(s)	83
AoxI	GGCC	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	105
ArsI	GACNNNNNNTTYG	2 cut(s)	410, 442
AsuHPI	GGTGA	2 cut(s)	272, 281
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	230
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	2 cut(s)	273, 457
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	2 cut(s)	258, 525
BcoDI	GTCTC	4 cut(s)	66, 85, 170, 453
BfmI	CTRYAG	1 cut(s)	586
BfrI	CTTAAG	1 cut(s)	535
BisI	GCNGC	2 cut(s)	106, 128
BlsI	GCNGC	2 cut(s)	107, 129
Bme1390I	CCNGG	2 cut(s)	258, 525
BmeRI	GACNNNNNGTC	1 cut(s)	92
BmgBI	CACGTC	1 cut(s)	530
BmrFI	CCNGG	2 cut(s)	258, 525
BmrI	ACTGGG	1 cut(s)	20
BmsI	GCATC	1 cut(s)	222
BmuI	ACTGGG	1 cut(s)	20
BpiI	GAAGAC	1 cut(s)	230
BsaAI	YACGTR	1 cut(s)	577
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	251, 480
BsaWI	WCCGGW	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 455
Bse1I	ACTGG	1 cut(s)	15
BseAI	TCCGGA	1 cut(s)	83
BseBI	CCWGG	2 cut(s)	258, 525
BseDI	CCNNGG	2 cut(s)	251, 480
BseLI	CCNNNNNNNGG	2 cut(s)	257, 455
BseMII	CTCAG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	561
BseXI	GCAGC	1 cut(s)	117
BseYI	CCCAGC	1 cut(s)	38
Bsh1236I	CGCG	2 cut(s)	90, 127
BshFI	GGCC	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	84
BslI	CCNNNNNNNGG	2 cut(s)	257, 455
BsmAI	GTCTC	4 cut(s)	66, 85, 170, 453
BsmBI	CGTCTC	2 cut(s)	66, 85
BsmI	GAATGC	2 cut(s)	252, 425
BsnI	GGCC	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp13I	TCCGGA	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	2 cut(s)	25, 127
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	1 cut(s)	13
BspEI	TCCGGA	1 cut(s)	83
BspFNI	CGCG	2 cut(s)	90, 127
BspQI	GCTCTTC	1 cut(s)	112
BspTI	CTTAAG	1 cut(s)	535
BsrBI	CCGCTC	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	2 cut(s)	251, 480
BssMI	GATC	1 cut(s)	61
BssNI	GRCGYC	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	251
Bst2UI	CCWGG	2 cut(s)	258, 525
Bst4CI	ACNGT	2 cut(s)	189, 590
Bst6I	CTCTTC	2 cut(s)	27, 112
BstACI	GRCGYC	1 cut(s)	78
BstAFI	CTTAAG	1 cut(s)	535
BstBAI	YACGTR	1 cut(s)	577
BstDEI	CTNAG	3 cut(s)	21, 228, 508
BstFNI	CGCG	2 cut(s)	90, 127
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	4 cut(s)	66, 85, 170, 453
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	5 cut(s)	49, 75, 133, 296, 422
BstNI	CCWGG	2 cut(s)	258, 525
BstSCI	CCNGG	2 cut(s)	256, 523
BstSFI	CTRYAG	1 cut(s)	586
BstUI	CGCG	2 cut(s)	90, 127
BstV1I	GCAGC	1 cut(s)	117
BstV2I	GAAGAC	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	256
BtrI	CACGTC	1 cut(s)	530
BtsIMutI	CAGTG	1 cut(s)	595
CseI	GACGC	4 cut(s)	46, 67, 96, 133
CspCI	CAANNNNNGTGG	2 cut(s)	189, 224
CviAII	CATG	4 cut(s)	291, 371, 385, 620
CviJI	RGCY	8 cut(s)	38, 130, 136, 256, 299, 317, 389, 518
CviKI_1	RGCY	8 cut(s)	38, 130, 136, 256, 299, 317, 389, 518
DdeI	CTNAG	3 cut(s)	21, 228, 508
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
DriI	GACNNNNNGTC	1 cut(s)	92
Eam1104I	CTCTTC	2 cut(s)	27, 112
Eam1105I	GACNNNNNGTC	1 cut(s)	92
EarI	CTCTTC	2 cut(s)	27, 112
Eco130I	CCWWGG	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	138
Eco57I	CTGAAG	3 cut(s)	51, 328, 438
EcoRII	CCWGG	2 cut(s)	256, 523
EcoT14I	CCWWGG	1 cut(s)	251
EcoT22I	ATGCAT	1 cut(s)	427
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	251
Esp3I	CGTCTC	2 cut(s)	66, 85
FaeI	CATG	4 cut(s)	294, 374, 388, 623
FatI	CATG	4 cut(s)	290, 370, 384, 619
Fnu4HI	GCNGC	2 cut(s)	106, 128
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	106, 128
GluI	GCNGC	2 cut(s)	106, 128
GsaI	CCCAGC	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	256
HapII	CCGG	1 cut(s)	84
HgaI	GACGC	4 cut(s)	46, 67, 96, 133
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	4 cut(s)	294, 374, 388, 623
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HinfI	GANTC	3 cut(s)	169, 461, 566
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	2 cut(s)	272, 281
Hpy166II	GTNNAC	4 cut(s)	158, 185, 192, 272
Hpy188I	TCNGA	2 cut(s)	22, 469
Hpy188III	TCNNGA	5 cut(s)	84, 173, 401, 456, 563
Hpy8I	GTNNAC	4 cut(s)	158, 185, 192, 272
Hpy99I	CGWCG	3 cut(s)	62, 127, 469
HpyCH4III	ACNGT	2 cut(s)	189, 590
HpyCH4IV	ACGT	2 cut(s)	529, 576
HpyCH4V	TGCA	6 cut(s)	214, 235, 384, 425, 583, 637
HpyF10VI	GCNNNNNNNGC	5 cut(s)	49, 75, 133, 296, 422
HpyF3I	CTNAG	3 cut(s)	21, 228, 508
HpySE526I	ACGT	2 cut(s)	529, 576
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	4 cut(s)	294, 374, 388, 623
Kpn2I	TCCGGA	1 cut(s)	83
Kzo9I	GATC	1 cut(s)	61
LguI	GCTCTTC	1 cut(s)	112
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	1 cut(s)	222
MaeII	ACGT	2 cut(s)	529, 576
MalI	GATC	1 cut(s)	63
MbiI	CCGCTC	1 cut(s)	25
MboI	GATC	1 cut(s)	61
MboII	GAAGA	4 cut(s)	44, 129, 235, 444
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	3 cut(s)	98, 362, 632
MlyI	GAGTC	2 cut(s)	455, 560
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	5 cut(s)	28, 213, 259, 475, 582
Mph1103I	ATGCAT	1 cut(s)	427
MroI	TCCGGA	1 cut(s)	83
MseI	TTAA	1 cut(s)	536
MslI	CAYNNNNRTG	1 cut(s)	588
MspCI	CTTAAG	1 cut(s)	535
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	2 cut(s)	258, 525
Mva1269I	GAATGC	2 cut(s)	252, 425
MvaI	CCWGG	2 cut(s)	258, 525
MvnI	CGCG	2 cut(s)	90, 127
MwoI	GCNNNNNNNGC	5 cut(s)	49, 75, 133, 296, 422
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	4 cut(s)	294, 374, 388, 623
NmeAIII	GCCGAG	1 cut(s)	505
NsiI	ATGCAT	1 cut(s)	427
OliI	CACNNNNGTG	1 cut(s)	588
PciSI	GCTCTTC	1 cut(s)	112
PctI	GAATGC	2 cut(s)	252, 425
PfeI	GAWTC	1 cut(s)	169
PflFI	GACNNNGTC	1 cut(s)	77
PfoI	TCCNGGA	1 cut(s)	523
PkrI	GCNGC	2 cut(s)	107, 129
PleI	GAGTC	2 cut(s)	455, 560
PpsI	GAGTC	2 cut(s)	455, 560
Ppu21I	YACGTR	1 cut(s)	577
Psp6I	CCWGG	2 cut(s)	256, 523
PspFI	CCCAGC	1 cut(s)	38
PspGI	CCWGG	2 cut(s)	256, 523
PsyI	GACNNNGTC	1 cut(s)	77
RseI	CAYNNNNRTG	1 cut(s)	588
SapI	GCTCTTC	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	536
SatI	GCNGC	2 cut(s)	106, 128
Sau3AI	GATC	1 cut(s)	61
SchI	GAGTC	2 cut(s)	455, 560
ScrFI	CCNGG	2 cut(s)	258, 525
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	9 cut(s)	184, 205, 312, 486, 496, 509, 520, 532, 579
SfaNI	GCATC	1 cut(s)	222
SfcI	CTRYAG	1 cut(s)	586
SmiMI	CAYNNNNRTG	1 cut(s)	588
SmlI	CTYRAG	1 cut(s)	535
SmoI	CTYRAG	1 cut(s)	535
Sse9I	AATT	3 cut(s)	98, 362, 632
SsiI	CCGC	2 cut(s)	25, 127
StyD4I	CCNGG	2 cut(s)	256, 523
StyI	CCWWGG	1 cut(s)	251
TaaI	ACNGT	2 cut(s)	189, 590
TaiI	ACGT	2 cut(s)	532, 579
TaqI	TCGA	3 cut(s)	60, 96, 172
TasI	AATT	3 cut(s)	98, 362, 632
TauI	GCSGC	1 cut(s)	130
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	1 cut(s)	536
Tru9I	TTAA	1 cut(s)	536
TscAI	CASTG	1 cut(s)	595
TseI	GCWGC	1 cut(s)	105
TspGWI	ACGGA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	595
Tth111I	GACNNNGTC	1 cut(s)	77
Vha464I	CTTAAG	1 cut(s)	535
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.