Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Reverse (-)

12227821 .. 12232399

Gene Structure 4579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001221

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGAGTCTCGCCGAGTCTCCACTACACTCTTCTAGCAGTGATGACTTTGCCGGGTTGCCTGAGAGAGAACTAGACTCCGGTTCTTCGGAGCCATCACCAGAGGAAGAAGATGAAGAAGATAAAGAAGCTGATGATGTTGAAAGTGAGAGCAGGATAAAAAGGCGTAGGGAAGATAATTTGGAAAGTGTAGATGATACTAATGGGTCGACCTTACAAGTACTTTCAGAACAAAACTCAGAAGCATCTGCAATGTGTGCACATCCTGGGTCATTTGGAGATCTGTGTTTTCTTTGTGGCCAGAGGTTGATTGACCAGTCTGGTGTGATATTTGGGTACATACTCAAGAGAGGGAAGATTATCAGGCAGAAATTTGTGCACGACTACAAGACTCTGATAGTTAAGGGCTTGGGAGAGACTTTGGCGGGTGCATATCCTGGACGAGCCATGAGCTTCATAATCCAGAAAGCCAATCTAAACTCTCCTATCGTTAATTGTTATCCAAGCAAGCCAATAGGGCTGTATACCAAGCAGTCTGTCATATTCAGAACAGACTCGCATGCTAAGGTTCTGGAAGGATATGCAGGTGCTGGGCTTCATGACAGTGTAATTATGGATAAAGAGGAGAAGATTGTCTGGGATTACTCAAGTGATCGGATGATCTTTGATAGGGGCTTCCAAGTCTCACTCTTCTCAAGAATTGCAGATGTGGGGAAGATATTAGAAGGCCGTTATGGTTGTCCTCAGGACATTGAAGGTAAGCGTATGAATGTTCAGTTACTTTGCTGGAGATCAACATTTTCAAGATTTGAGAATTTTGTCAAGGACATAAGGGAGATGACATCACTGAAAACTATTGTTGTAAGTGGCACAGCCAAAAGTCGAGTACCACCCTGTATGGGAAGATTGAAAAACCTGAACTACTCATTGGAAAGCAGAAATGTTCATAACCTTCCAGAACCCAGTGGCCTTTCCCACCTTGAACGTCCATGTTTCTGTAATTGCACAAACCTTCCTGCAAGTGGAGATTTACCAACTAGGTCGAAGGACTTGGAATCAGATCACTGCACTGCACTTGCAATAATTCCAGATTCAAACTCCTTCTCCTCCCTCCTTGTCACGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

375

Amino Acids

41.48

Weight (kDa)

5.34

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	572
Acc36I	ACCTGC	1 cut(s)	572
AccI	GTMKAC	2 cut(s)	206, 521
AciI	CCGC	1 cut(s)	422
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	2 cut(s)	368, 811
AfaI	GTAC	3 cut(s)	219, 335, 885
AfiI	CCNNNNNNNGG	2 cut(s)	896, 1019
AgsI	TTSAA	6 cut(s)	140, 752, 801, 907, 980, 1092
AjnI	CCWGG	2 cut(s)	262, 433
AjuI	GAANNNNNNNTTGG	2 cut(s)	908, 940
AluBI	AGCT	2 cut(s)	128, 450
AluI	AGCT	2 cut(s)	128, 450
Alw21I	GWGCWC	2 cut(s)	259, 378
Alw26I	GTCTC	4 cut(s)	11, 21, 407, 685
Alw44I	GTGCAC	2 cut(s)	255, 374
AlwNI	CAGNNNCTG	1 cut(s)	587
AoxI	GGCC	3 cut(s)	295, 724, 964
ApaLI	GTGCAC	2 cut(s)	255, 374
ApoI	RAATTY	2 cut(s)	368, 811
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	87
AxyI	CCTNAGG	1 cut(s)	741
BaeGI	GKGCMC	2 cut(s)	259, 378
BalI	TGGCCA	1 cut(s)	297
Bbv12I	GWGCWC	2 cut(s)	259, 378
BccI	CCATC	1 cut(s)	100
BceAI	ACGGC	1 cut(s)	711
BciT130I	CCWGG	2 cut(s)	264, 435
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	4 cut(s)	11, 21, 407, 685
BfaI	CTAG	3 cut(s)	33, 71, 1035
BfuAI	ACCTGC	1 cut(s)	572
BglI	GCCNNNNNGGC	1 cut(s)	514
BglII	AGATCT	1 cut(s)	277
BmcAI	AGTACT	1 cut(s)	219
Bme1390I	CCNGG	3 cut(s)	52, 264, 435
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	3 cut(s)	52, 264, 435
BmrI	ACTGGG	1 cut(s)	954
BmsI	GCATC	1 cut(s)	251
BmuI	ACTGGG	1 cut(s)	954
BpmI	CTGGAG	1 cut(s)	805
Bpu10I	CCTNAGC	1 cut(s)	561
BpuEI	CTTGAG	3 cut(s)	326, 628, 676
BpuMI	CCSGG	1 cut(s)	52
BsaJI	CCNNGG	1 cut(s)	263
BsaWI	WCCGGW	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	1085, 1115
Bsc4I	CCNNNNNNNGG	2 cut(s)	896, 1019
Bse1I	ACTGG	2 cut(s)	313, 960
Bse21I	CCTNAGG	1 cut(s)	741
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	2 cut(s)	264, 435
BseDI	CCNNGG	1 cut(s)	263
BseGI	GGATG	2 cut(s)	259, 660
BseLI	CCNNNNNNNGG	2 cut(s)	896, 1019
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	3 cut(s)	51, 249, 755
BseNI	ACTGG	2 cut(s)	313, 960
BseRI	GAGGAG	2 cut(s)	635, 1093
BseSI	GKGCMC	2 cut(s)	259, 378
BseYI	CCCAGC	1 cut(s)	587
BsgI	GTGCAG	2 cut(s)	1048, 1053
BshFI	GGCC	3 cut(s)	297, 726, 966
BsiHKAI	GWGCWC	2 cut(s)	259, 378
BsiSI	CCGG	2 cut(s)	51, 78
BslI	CCNNNNNNNGG	2 cut(s)	896, 1019
BsmAI	GTCTC	4 cut(s)	11, 21, 407, 685
BsnI	GGCC	3 cut(s)	297, 726, 966
Bsp1286I	GDGCHC	2 cut(s)	259, 378
Bsp143I	GATC	5 cut(s)	277, 649, 657, 788, 1057
BspACI	CCGC	1 cut(s)	422
BspANI	GGCC	3 cut(s)	297, 726, 966
BspCNI	CTCAG	3 cut(s)	52, 248, 754
BspHI	TCATGA	1 cut(s)	595
BspLI	GGNNCC	1 cut(s)	90
BspMI	ACCTGC	1 cut(s)	572
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	2 cut(s)	313, 960
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	5 cut(s)	277, 649, 657, 788, 1057
BssNAI	GTATAC	1 cut(s)	522
Bst1107I	GTATAC	1 cut(s)	522
Bst2UI	CCWGG	2 cut(s)	264, 435
Bst4CI	ACNGT	1 cut(s)	602
Bst6I	CTCTTC	2 cut(s)	34, 692
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstC8I	GCNNGC	2 cut(s)	506, 558
BstDEI	CTNAG	4 cut(s)	60, 235, 561, 741
BstF5I	GGATG	2 cut(s)	259, 660
BstKTI	GATC	5 cut(s)	280, 652, 660, 791, 1060
BstMAI	GTCTC	4 cut(s)	11, 21, 407, 685
BstMBI	GATC	5 cut(s)	277, 649, 657, 788, 1057
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 514
BstNI	CCWGG	2 cut(s)	264, 435
BstNSI	RCATGY	1 cut(s)	560
BstSCI	CCNGG	3 cut(s)	50, 262, 433
BstSLI	GKGCMC	2 cut(s)	259, 378
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BstZ17I	GTATAC	1 cut(s)	522
Bsu36I	CCTNAGG	1 cut(s)	741
BsuRI	GGCC	3 cut(s)	297, 726, 966
BtsCI	GGATG	2 cut(s)	259, 660
BtsI	GCAGTG	3 cut(s)	43, 1060, 1065
BtsIMutI	CAGTG	6 cut(s)	43, 607, 842, 967, 1060, 1065
BveI	ACCTGC	1 cut(s)	572
Cac8I	GCNNGC	2 cut(s)	506, 558
CaiI	CAGNNNCTG	1 cut(s)	587
CciI	TCATGA	1 cut(s)	595
Csp6I	GTAC	3 cut(s)	218, 334, 884
CviAII	CATG	4 cut(s)	445, 557, 596, 987
CviQI	GTAC	3 cut(s)	218, 334, 884
DdeI	CTNAG	4 cut(s)	60, 235, 561, 741
DpnI	GATC	5 cut(s)	279, 651, 659, 790, 1059
DpnII	GATC	5 cut(s)	277, 649, 657, 788, 1057
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	2 cut(s)	34, 692
EarI	CTCTTC	2 cut(s)	34, 692
Eco81I	CCTNAGG	1 cut(s)	741
EcoRII	CCWGG	2 cut(s)	262, 433
FaeI	CATG	4 cut(s)	448, 560, 599, 990
FatI	CATG	4 cut(s)	444, 556, 595, 986
FauI	CCCGC	1 cut(s)	415
FblI	GTMKAC	2 cut(s)	206, 521
FokI	GGATG	2 cut(s)	246, 667
FspBI	CTAG	3 cut(s)	33, 71, 1035
GsaI	CCCAGC	1 cut(s)	591
GsuI	CTGGAG	1 cut(s)	805
HaeIII	GGCC	3 cut(s)	297, 726, 966
HapII	CCGG	2 cut(s)	51, 78
Hin1II	CATG	4 cut(s)	448, 560, 599, 990
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HinfI	GANTC	7 cut(s)	4, 14, 74, 388, 551, 1052, 1088
HpaII	CCGG	2 cut(s)	51, 78
HphI	GGTGA	1 cut(s)	87
Hpy166II	GTNNAC	4 cut(s)	207, 257, 376, 522
Hpy188I	TCNGA	7 cut(s)	88, 226, 238, 393, 545, 654, 1057
Hpy188III	TCNNGA	9 cut(s)	343, 460, 569, 596, 693, 743, 801, 953, 1085
Hpy8I	GTNNAC	4 cut(s)	207, 257, 376, 522
HpyAV	CCTTC	7 cut(s)	566, 716, 746, 959, 1019, 1036, 1108
HpyCH4III	ACNGT	1 cut(s)	602
HpyCH4IV	ACGT	1 cut(s)	982
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 514
HpyF3I	CTNAG	4 cut(s)	60, 235, 561, 741
HpySE526I	ACGT	1 cut(s)	982
Hsp92II	CATG	4 cut(s)	448, 560, 599, 990
Kzo9I	GATC	5 cut(s)	277, 649, 657, 788, 1057
LmnI	GCTCC	1 cut(s)	88
LweI	GCATC	1 cut(s)	251
MaeI	CTAG	3 cut(s)	33, 71, 1035
MaeII	ACGT	1 cut(s)	982
MaeIII	GTNAC	2 cut(s)	774, 1114
MalI	GATC	5 cut(s)	279, 651, 659, 790, 1059
MboI	GATC	5 cut(s)	277, 649, 657, 788, 1057
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	2 cut(s)	259, 378
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	8 cut(s)	175, 368, 490, 606, 696, 811, 997, 1080
MluNI	TGGCCA	1 cut(s)	297
MlyI	GAGTC	5 cut(s)	13, 23, 68, 382, 545
MnlI	CCTC	7 cut(s)	94, 294, 341, 613, 750, 1114, 1118
Mox20I	TGGCCA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	297
MseI	TTAA	2 cut(s)	399, 489
MslI	CAYNNNNRTG	1 cut(s)	600
Msp20I	TGGCCA	1 cut(s)	297
MspI	CCGG	2 cut(s)	51, 78
MspR9I	CCNGG	3 cut(s)	52, 264, 435
MvaI	CCWGG	2 cut(s)	264, 435
MwoI	GCNNNNNNNGC	2 cut(s)	254, 514
NciI	CCSGG	1 cut(s)	52
NdeII	GATC	5 cut(s)	277, 649, 657, 788, 1057
NlaIII	CATG	4 cut(s)	448, 560, 599, 990
NlaIV	GGNNCC	1 cut(s)	90
NmeAIII	GCCGAG	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	1114
NspI	RCATGY	1 cut(s)	560
PaeI	GCATGC	1 cut(s)	560
PagI	TCATGA	1 cut(s)	595
PaqCI	CACCTGC	1 cut(s)	572
PfeI	GAWTC	2 cut(s)	1052, 1088
PfoI	TCCNGGA	1 cut(s)	433
PleI	GAGTC	5 cut(s)	12, 22, 68, 382, 545
PpsI	GAGTC	5 cut(s)	12, 22, 68, 382, 545
Psp6I	CCWGG	2 cut(s)	262, 433
PspFI	CCCAGC	1 cut(s)	587
PspGI	CCWGG	2 cut(s)	262, 433
PspN4I	GGNNCC	1 cut(s)	90
PstNI	CAGNNNCTG	1 cut(s)	587
PsuI	RGATCY	1 cut(s)	277
RsaI	GTAC	3 cut(s)	219, 335, 885
RsaNI	GTAC	3 cut(s)	218, 334, 884
RseI	CAYNNNNRTG	1 cut(s)	600
SalI	GTCGAC	1 cut(s)	205
SaqAI	TTAA	2 cut(s)	399, 489
Sau3AI	GATC	5 cut(s)	277, 649, 657, 788, 1057
ScaI	AGTACT	1 cut(s)	219
SchI	GAGTC	5 cut(s)	13, 23, 68, 382, 545
ScrFI	CCNGG	3 cut(s)	52, 264, 435
SduI	GDGCHC	2 cut(s)	259, 378
SfaNI	GCATC	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	3 cut(s)	341, 643, 691
SmoI	CTYRAG	3 cut(s)	341, 643, 691
SphI	GCATGC	1 cut(s)	560
Sse9I	AATT	8 cut(s)	175, 368, 490, 606, 696, 811, 997, 1080
SsiI	CCGC	1 cut(s)	422
SspMI	CTAG	3 cut(s)	33, 71, 1035
StyD4I	CCNGG	3 cut(s)	50, 262, 433
TaaI	ACNGT	1 cut(s)	602
TaiI	ACGT	1 cut(s)	985
TaqI	TCGA	3 cut(s)	206, 880, 1040
TasI	AATT	8 cut(s)	175, 368, 490, 606, 696, 811, 997, 1080
TatI	WGTACW	1 cut(s)	217
TfiI	GAWTC	2 cut(s)	1052, 1088
Tru1I	TTAA	2 cut(s)	399, 489
Tru9I	TTAA	2 cut(s)	399, 489
TscAI	CASTG	6 cut(s)	43, 607, 849, 967, 1067, 1072
TseFI	GTSAC	1 cut(s)	1114
Tsp45I	GTSAC	1 cut(s)	1114
TspDTI	ATGAA	5 cut(s)	126, 442, 584, 779, 932
TspRI	CASTG	6 cut(s)	43, 607, 849, 967, 1067, 1072
VneI	GTGCAC	2 cut(s)	255, 374
XapI	RAATTY	2 cut(s)	368, 811
XceI	RCATGY	1 cut(s)	560
XmiI	GTMKAC	2 cut(s)	206, 521
XspI	CTAG	3 cut(s)	33, 71, 1035
ZrmI	AGTACT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.