Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Forward (+)

55305733 .. 55306866

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G036560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCATGGCTGTAAATTCAAGAAATCATCTGTGCTGATTATGCCTTTGTTATTCACACAAAAAATTCCCCATGTCAGGGAATACTGCAGAAATTTACAGAGAGTAGTTAAGGGCTTGGGAGAGACTTTGGTGGGTGCATATCCTGGACGAGCCATGAGCTTCATAACCCAGAAAGCCAATCTAAACTCTCCTATCGTTAATTGTTATCCAAGCAAGCCAATATGGCTGTATAGCAAGCAGTCTGTCACATTCAGAGCAGACTCGAATGCTGAGGTTCTGGAAGGATATGCAGGTGCTGGGCTTCATGACAGTGTAATTATGGATAAAGAGGAGAAGATTGTGTGGGATTACTCAAGCGATCGGATGATCTTTGATAGGGGCTTTCAAGTCTCACTCTTCTCAAGAATTGCAGACGTGGGGAAGATATTAGAAGGCCTTTATGGTTGTCCTCAGGACATTGAAGGTGTGGTAAAAGATGGATTGATATACGTAGTTCAGTCAAGGCCACAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

171

Amino Acids

19.22

Weight (kDa)

8.86

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	281
Acc36I	ACCTGC	1 cut(s)	281
AcsI	RAATTY	3 cut(s)	14, 63, 91
AfiI	CCNNNNNNNGG	2 cut(s)	75, 76
AgsI	TTSAA	3 cut(s)	19, 386, 461
AjiI	CACGTC	1 cut(s)	415
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	1 cut(s)	159
AluI	AGCT	1 cut(s)	159
Alw26I	GTCTC	2 cut(s)	116, 394
AlwNI	CAGNNNCTG	1 cut(s)	296
AoxI	GGCC	2 cut(s)	433, 503
ApoI	RAATTY	3 cut(s)	14, 63, 91
AxyI	CCTNAGG	1 cut(s)	450
BbvCI	CCTCAGC	1 cut(s)	270
BccI	CCATC	1 cut(s)	470
BciT130I	CCWGG	1 cut(s)	144
BcoDI	GTCTC	2 cut(s)	116, 394
BfaI	CTAG	1 cut(s)	514
BfmI	CTRYAG	1 cut(s)	85
BfuAI	ACCTGC	1 cut(s)	281
BglI	GCCNNNNNGGC	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	144
BmgBI	CACGTC	1 cut(s)	415
BmrFI	CCNGG	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	270
BpuEI	CTTGAG	2 cut(s)	337, 385
BsaAI	YACGTR	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 76
Bse21I	CCTNAGG	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	2 cut(s)	75, 76
BseMII	CTCAG	2 cut(s)	261, 464
BseRI	GAGGAG	1 cut(s)	344
BseYI	CCCAGC	1 cut(s)	296
Bsh1285I	CGRYCG	1 cut(s)	361
BshFI	GGCC	2 cut(s)	435, 505
BsiEI	CGRYCG	1 cut(s)	361
BslI	CCNNNNNNNGG	2 cut(s)	75, 76
BsmAI	GTCTC	2 cut(s)	116, 394
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	2 cut(s)	435, 505
Bsp143I	GATC	2 cut(s)	358, 366
BspANI	GGCC	2 cut(s)	435, 505
BspCNI	CTCAG	2 cut(s)	262, 463
BspHI	TCATGA	1 cut(s)	304
BspMAI	CTGCAG	1 cut(s)	89
BspMI	ACCTGC	1 cut(s)	281
BssMI	GATC	2 cut(s)	358, 366
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	401
BstBAI	YACGTR	1 cut(s)	490
BstC8I	GCNNGC	2 cut(s)	215, 236
BstDEI	CTNAG	2 cut(s)	270, 450
BstF5I	GGATG	1 cut(s)	369
BstKTI	GATC	2 cut(s)	361, 369
BstMAI	GTCTC	2 cut(s)	116, 394
BstMBI	GATC	2 cut(s)	358, 366
BstMCI	CGRYCG	1 cut(s)	361
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 223
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	1 cut(s)	85
BstSNI	TACGTA	1 cut(s)	490
Bsu36I	CCTNAGG	1 cut(s)	450
BsuRI	GGCC	2 cut(s)	435, 505
BtrI	CACGTC	1 cut(s)	415
BtsCI	GGATG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	316
BveI	ACCTGC	1 cut(s)	281
Cac8I	GCNNGC	2 cut(s)	215, 236
CaiI	CAGNNNCTG	1 cut(s)	296
CciI	TCATGA	1 cut(s)	304
CviAII	CATG	4 cut(s)	5, 71, 154, 305
DdeI	CTNAG	2 cut(s)	270, 450
DpnI	GATC	2 cut(s)	360, 368
DpnII	GATC	2 cut(s)	358, 366
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
Eco105I	TACGTA	1 cut(s)	490
Eco147I	AGGCCT	1 cut(s)	435
Eco81I	CCTNAGG	1 cut(s)	450
EcoRII	CCWGG	1 cut(s)	142
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	4 cut(s)	8, 74, 157, 308
FatI	CATG	4 cut(s)	4, 70, 153, 304
FokI	GGATG	1 cut(s)	376
FspBI	CTAG	1 cut(s)	514
GsaI	CCCAGC	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	435, 505
Hin1II	CATG	4 cut(s)	8, 74, 157, 308
HinfI	GANTC	1 cut(s)	260
Hpy188I	TCNGA	2 cut(s)	254, 363
Hpy188III	TCNNGA	5 cut(s)	19, 278, 305, 402, 452
HpyAV	CCTTC	3 cut(s)	275, 425, 455
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	2 cut(s)	414, 489
HpyCH4V	TGCA	5 cut(s)	4, 87, 137, 290, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 223
HpyF3I	CTNAG	2 cut(s)	270, 450
HpySE526I	ACGT	2 cut(s)	414, 489
Hsp92II	CATG	4 cut(s)	8, 74, 157, 308
Kzo9I	GATC	2 cut(s)	358, 366
LpnPI	CCDG	8 cut(s)	61, 129, 156, 182, 263, 276, 282, 437
MaeI	CTAG	1 cut(s)	514
MaeII	ACGT	2 cut(s)	414, 489
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	2 cut(s)	360, 368
MboI	GATC	2 cut(s)	358, 366
MboII	GAAGA	3 cut(s)	346, 388, 433
MluCI	AATT	6 cut(s)	14, 63, 91, 199, 315, 405
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	3 cut(s)	265, 322, 459
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	108, 198
MslI	CAYNNNNRTG	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	40, 223
NdeII	GATC	2 cut(s)	358, 366
NlaIII	CATG	4 cut(s)	8, 74, 157, 308
NmuCI	GTSAC	1 cut(s)	244
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	304
PaqCI	CACCTGC	1 cut(s)	281
PceI	AGGCCT	1 cut(s)	435
PctI	GAATGC	1 cut(s)	271
PfoI	TCCNGGA	1 cut(s)	142
Ple19I	CGATCG	1 cut(s)	361
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
Ppu21I	YACGTR	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	142
PspFI	CCCAGC	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	89
PstNI	CAGNNNCTG	1 cut(s)	296
PvuI	CGATCG	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	108, 198
Sau3AI	GATC	2 cut(s)	358, 366
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	1 cut(s)	144
SetI	ASST	6 cut(s)	161, 276, 295, 417, 466, 492
SfcI	CTRYAG	1 cut(s)	85
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	2 cut(s)	352, 400
SmoI	CTYRAG	2 cut(s)	352, 400
SnaBI	TACGTA	1 cut(s)	490
Sse9I	AATT	6 cut(s)	14, 63, 91, 199, 315, 405
SseBI	AGGCCT	1 cut(s)	435
SspMI	CTAG	1 cut(s)	514
StuI	AGGCCT	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	142
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	2 cut(s)	417, 492
TaqI	TCGA	1 cut(s)	263
TasI	AATT	6 cut(s)	14, 63, 91, 199, 315, 405
Tru1I	TTAA	2 cut(s)	108, 198
Tru9I	TTAA	2 cut(s)	108, 198
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	2 cut(s)	151, 293
TspRI	CASTG	1 cut(s)	316
XapI	RAATTY	3 cut(s)	14, 63, 91
XspI	CTAG	1 cut(s)	514
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.