Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Reverse (-)

47042187 .. 47047787

Gene Structure 5601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG327500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGGATGCTGCAAATCTCCGACGCCGGCTCCGAGATCTCTCTGCCGCCGCAGCCACAAATGGGTATTCTCTTCTCTCACTTCTCCACCTCAAAGACCGGTAGTAGTTCTTGGAAGTCGACAACCCTCTTCTATTCTTGAACCCGATCTAGTTTTACTTCAAACACCGGTTCTTGGGTCTTCTTCTGTTCTTGAATTTGATCTTGAAAGACTGGTTCCTTGGGCTTCGACCTCGGCCTCGGTGTCTCTGAAATTATTTGATGTCTTCAAGAATGCTTGGCATCAGCTTGGCAACATGAGTGCAGAGGTAGCAATGGAGCAGTACATCACTCTTCTTTCAGGAAGTGTTCTTGGGTGGATGCAAGATGTTCATGGTGTTAGAGTATCTGGTATCCCAGATTATCTCCTATTTCTTGGCTGTGATTGCAGACATCTTGGAGATGACATAGGTAAGAATGCTGTAGGTGAATATAATGAGTGTTTTACGATACTACAAGTTGTATGTGGCCAGACACATTCGTTTAAGTCACTGAACTTTTTGGGTTTCAATGCTGCTGGTGCGTGCATTAGATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0044421 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP

Protein Analysis

191

Amino Acids

20.87

Weight (kDa)

6.93

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	118
AciI	CCGC	2 cut(s)	46, 49
AcoI	YGGCCR	1 cut(s)	505
AcsI	RAATTY	1 cut(s)	194
AcyI	GRCGYC	1 cut(s)	23
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	61, 173
AgeI	ACCGGT	2 cut(s)	97, 166
AgsI	TTSAA	6 cut(s)	140, 161, 194, 206, 268, 547
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw26I	GTCTC	1 cut(s)	249
AoxI	GGCC	2 cut(s)	234, 505
ApeKI	GCWGC	3 cut(s)	9, 51, 551
ApoI	RAATTY	1 cut(s)	194
AsiGI	ACCGGT	2 cut(s)	97, 166
AsuHPI	GGTGA	1 cut(s)	476
BalI	TGGCCA	1 cut(s)	507
BbsI	GAAGAC	2 cut(s)	171, 256
BbvI	GCAGC	2 cut(s)	63, 538
BciVI	GTATCC	1 cut(s)	401
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	459
BfuI	GTATCC	1 cut(s)	401
BglII	AGATCT	1 cut(s)	35
BisI	GCNGC	5 cut(s)	10, 46, 49, 52, 552
BlsI	GCNGC	5 cut(s)	11, 47, 50, 53, 553
BmiI	GGNNCC	2 cut(s)	30, 216
BmsI	GCATC	2 cut(s)	289, 348
BpiI	GAAGAC	2 cut(s)	171, 256
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	218, 231, 237
BsaWI	WCCGGW	2 cut(s)	97, 166
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 173
Bse118I	RCCGGY	3 cut(s)	25, 97, 166
Bse1I	ACTGG	1 cut(s)	216
Bse3DI	GCAATG	1 cut(s)	318
BseDI	CCNNGG	3 cut(s)	218, 231, 237
BseGI	GGATG	2 cut(s)	11, 363
BseLI	CCNNNNNNNGG	2 cut(s)	61, 173
BseMI	GCAATG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	216
BseXI	GCAGC	2 cut(s)	63, 538
BsgI	GTGCAG	1 cut(s)	321
BshFI	GGCC	2 cut(s)	236, 507
BshTI	ACCGGT	2 cut(s)	97, 166
BsiSI	CCGG	3 cut(s)	26, 98, 167
BslI	CCNNNNNNNGG	2 cut(s)	61, 173
BsmAI	GTCTC	1 cut(s)	249
BsmI	GAATGC	2 cut(s)	277, 460
BsnI	GGCC	2 cut(s)	236, 507
Bsp143I	GATC	3 cut(s)	35, 145, 199
BspACI	CCGC	2 cut(s)	46, 49
BspANI	GGCC	2 cut(s)	236, 507
BspLI	GGNNCC	2 cut(s)	30, 216
BsrDI	GCAATG	1 cut(s)	318
BsrFI	RCCGGY	3 cut(s)	25, 97, 166
BsrI	ACTGG	1 cut(s)	216
BssAI	RCCGGY	3 cut(s)	25, 97, 166
BssECI	CCNNGG	3 cut(s)	218, 231, 237
BssMI	GATC	3 cut(s)	35, 145, 199
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	218
Bst6I	CTCTTC	3 cut(s)	76, 133, 336
BstACI	GRCGYC	1 cut(s)	23
BstC8I	GCNNGC	2 cut(s)	27, 562
BstF5I	GGATG	2 cut(s)	11, 363
BstKTI	GATC	3 cut(s)	38, 148, 202
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	3 cut(s)	35, 145, 199
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 308, 423, 557
BstSFI	CTRYAG	1 cut(s)	459
BstV1I	GCAGC	2 cut(s)	63, 538
BstV2I	GAAGAC	2 cut(s)	171, 256
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
BsuI	GTATCC	1 cut(s)	401
BsuRI	GGCC	2 cut(s)	236, 507
BtsCI	GGATG	2 cut(s)	11, 363
BtsIMutI	CAGTG	1 cut(s)	527
Cac8I	GCNNGC	2 cut(s)	27, 562
Cfr10I	RCCGGY	3 cut(s)	25, 97, 166
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	322
CspAI	ACCGGT	2 cut(s)	97, 166
CviAII	CATG	2 cut(s)	295, 371
CviJI	RGCY	7 cut(s)	29, 54, 224, 236, 286, 417, 507
CviKI_1	RGCY	7 cut(s)	29, 54, 224, 236, 286, 417, 507
CviQI	GTAC	1 cut(s)	322
DpnI	GATC	3 cut(s)	37, 147, 201
DpnII	GATC	3 cut(s)	35, 145, 199
EaeI	YGGCCR	1 cut(s)	505
Eam1104I	CTCTTC	3 cut(s)	76, 133, 336
EarI	CTCTTC	3 cut(s)	76, 133, 336
Eco130I	CCWWGG	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	2 cut(s)	298, 374
FaiI	YATR	5 cut(s)	296, 372, 446, 471, 502
FatI	CATG	2 cut(s)	294, 370
FblI	GTMKAC	1 cut(s)	118
Fnu4HI	GCNGC	5 cut(s)	10, 46, 49, 52, 552
FokI	GGATG	2 cut(s)	18, 370
Fsp4HI	GCNGC	5 cut(s)	10, 46, 49, 52, 552
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	5 cut(s)	10, 46, 49, 52, 552
HaeIII	GGCC	2 cut(s)	236, 507
HapII	CCGG	3 cut(s)	26, 98, 167
HgaI	GACGC	1 cut(s)	31
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	2 cut(s)	298, 374
HincII	GTYRAC	1 cut(s)	119
HindII	GTYRAC	1 cut(s)	119
HpaII	CCGG	3 cut(s)	26, 98, 167
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	3 cut(s)	21, 33, 249
Hpy188III	TCNNGA	5 cut(s)	137, 191, 203, 268, 339
Hpy8I	GTNNAC	1 cut(s)	119
Hpy99I	CGWCG	1 cut(s)	25
HpyCH4V	TGCA	5 cut(s)	12, 302, 361, 426, 564
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 308, 423, 557
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	298, 374
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
Kzo9I	GATC	3 cut(s)	35, 145, 199
LmnI	GCTCC	2 cut(s)	34, 316
LpnPI	CCDG	9 cut(s)	39, 111, 180, 197, 324, 372, 408, 521, 540
Lsp1109I	GCAGC	2 cut(s)	63, 538
LweI	GCATC	2 cut(s)	289, 348
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	525
MalI	GATC	3 cut(s)	37, 147, 201
MboI	GATC	3 cut(s)	35, 145, 199
MboII	GAAGA	6 cut(s)	63, 120, 171, 174, 256, 323
MflI	RGATCY	1 cut(s)	35
MlsI	TGGCCA	1 cut(s)	507
MluCI	AATT	2 cut(s)	194, 251
MluNI	TGGCCA	1 cut(s)	507
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	5 cut(s)	99, 136, 241, 247, 298
Mox20I	TGGCCA	1 cut(s)	507
MroNI	GCCGGC	1 cut(s)	25
MscI	TGGCCA	1 cut(s)	507
MseI	TTAA	1 cut(s)	522
Msp20I	TGGCCA	1 cut(s)	507
MspI	CCGG	3 cut(s)	26, 98, 167
Mva1269I	GAATGC	2 cut(s)	277, 460
MwoI	GCNNNNNNNGC	4 cut(s)	51, 308, 423, 557
NaeI	GCCGGC	1 cut(s)	27
NdeII	GATC	3 cut(s)	35, 145, 199
NgoMIV	GCCGGC	1 cut(s)	25
NlaIII	CATG	2 cut(s)	298, 374
NlaIV	GGNNCC	2 cut(s)	30, 216
NmeAIII	GCCGAG	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	525
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PctI	GAATGC	2 cut(s)	277, 460
PdiI	GCCGGC	1 cut(s)	27
PinAI	ACCGGT	2 cut(s)	97, 166
PkrI	GCNGC	5 cut(s)	11, 47, 50, 53, 553
PspN4I	GGNNCC	2 cut(s)	30, 216
PsuI	RGATCY	1 cut(s)	35
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SalI	GTCGAC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	5 cut(s)	10, 46, 49, 52, 552
Sau3AI	GATC	3 cut(s)	35, 145, 199
SetI	ASST	6 cut(s)	91, 233, 288, 309, 451, 466
SfaNI	GCATC	2 cut(s)	289, 348
SfcI	CTRYAG	1 cut(s)	459
Sse9I	AATT	2 cut(s)	194, 251
SsiI	CCGC	2 cut(s)	46, 49
SspMI	CTAG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	218
TaqI	TCGA	2 cut(s)	118, 227
TasI	AATT	2 cut(s)	194, 251
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	2 cut(s)	48, 51
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	1 cut(s)	534
TseFI	GTSAC	1 cut(s)	525
TseI	GCWGC	3 cut(s)	9, 51, 551
Tsp45I	GTSAC	1 cut(s)	525
TspDTI	ATGAA	1 cut(s)	359
TspRI	CASTG	1 cut(s)	534
XapI	RAATTY	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	118
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.