Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Forward (+)

54992793 .. 54995079

Gene Structure 2287 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G036420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGACATCTGTTGTTTTCCCTATTCAACTGGTTTGGGCTTCAAAGTGGAATGAAAGAGCTTTTATTAGTCGTAAGAAAGCTAAACTAGACCATGAGAACATATGCATGGCTGTAAATTCAAGAAATCATCTGTGCCGATTATGCCTTTGTTATTCACACAAAAAATTCCCCTTGTCAGGGAATACTGCAGAAATTTACAGAGAGATAGTTAAGGGCTTGGGAGAGACTTTGGTGGGTGCATATCCTGGACAAGCCATGAGCTTCATAACCCAGAAAGCCAATCTAAACTCTCCTATTGTTAATTGTTATCCAAGCAAGCCAGTAGGGCTGTATACCAAGCAGTCTGTCATATTCAGAACAGACTCGAATGCTAAGGTTCTGGAAGGATATGCAGGTGCTGGGCTTCATGACAGTGTAATTATGGATAAAGAGGTGAAGATTGTGTGGGATTACTCAAGCAATCGGATGATCTTTGATAGGGGCTTCCAAGTCTCACTCTTCTCAAGAATTGCTGACGTGGGGAAGATATTAGAAGGCTGTTATGGTTGTCCTCAGGACATTGAAGGTGTGGTAAAAGATGGATTGATATACGTAGTTCAGTCAAGGCCACAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

205

Amino Acids

22.96

Weight (kDa)

9.04

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPDK_N	PF01326	6 - 204	3.5e-11	Pyruvate phosphate dikinase, AMP/ATP-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	383
Acc36I	ACCTGC	1 cut(s)	383
AccI	GTMKAC	1 cut(s)	332
AcsI	RAATTY	3 cut(s)	115, 164, 192
AfiI	CCNNNNNNNGG	2 cut(s)	176, 177
AgsI	TTSAA	4 cut(s)	26, 42, 120, 563
AjiI	CACGTC	1 cut(s)	517
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	3 cut(s)	59, 80, 261
AluI	AGCT	3 cut(s)	59, 80, 261
Alw26I	GTCTC	2 cut(s)	218, 496
AlwNI	CAGNNNCTG	1 cut(s)	398
AoxI	GGCC	1 cut(s)	605
ApoI	RAATTY	3 cut(s)	115, 164, 192
AsuHPI	GGTGA	1 cut(s)	445
AxyI	CCTNAGG	1 cut(s)	552
BccI	CCATC	1 cut(s)	572
BciT130I	CCWGG	1 cut(s)	246
BcoDI	GTCTC	2 cut(s)	218, 496
BfaI	CTAG	2 cut(s)	86, 616
BfmI	CTRYAG	1 cut(s)	186
BfuAI	ACCTGC	1 cut(s)	383
BglI	GCCNNNNNGGC	1 cut(s)	325
Bme1390I	CCNGG	1 cut(s)	246
BmgBI	CACGTC	1 cut(s)	517
BmrFI	CCNGG	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	372
BpuEI	CTTGAG	2 cut(s)	439, 487
BsaAI	YACGTR	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 177
Bse1I	ACTGG	2 cut(s)	33, 320
Bse21I	CCTNAGG	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	471
BseLI	CCNNNNNNNGG	2 cut(s)	176, 177
BseMII	CTCAG	1 cut(s)	566
BseNI	ACTGG	2 cut(s)	33, 320
BseYI	CCCAGC	1 cut(s)	398
BshFI	GGCC	1 cut(s)	607
BslI	CCNNNNNNNGG	2 cut(s)	176, 177
BsmAI	GTCTC	2 cut(s)	218, 496
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	607
Bsp143I	GATC	1 cut(s)	468
BspANI	GGCC	1 cut(s)	607
BspCNI	CTCAG	1 cut(s)	565
BspHI	TCATGA	1 cut(s)	406
BspMAI	CTGCAG	1 cut(s)	190
BspMI	ACCTGC	1 cut(s)	383
BsrI	ACTGG	2 cut(s)	33, 320
BssMI	GATC	1 cut(s)	468
BssNAI	GTATAC	1 cut(s)	333
Bst1107I	GTATAC	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	413
Bst6I	CTCTTC	1 cut(s)	503
BstBAI	YACGTR	1 cut(s)	592
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	2 cut(s)	372, 552
BstF5I	GGATG	1 cut(s)	471
BstKTI	GATC	1 cut(s)	471
BstMAI	GTCTC	2 cut(s)	218, 496
BstMBI	GATC	1 cut(s)	468
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 325
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	244
BstSFI	CTRYAG	1 cut(s)	186
BstSNI	TACGTA	1 cut(s)	592
BstZ17I	GTATAC	1 cut(s)	333
Bsu36I	CCTNAGG	1 cut(s)	552
BsuRI	GGCC	1 cut(s)	607
BtrI	CACGTC	1 cut(s)	517
BtsCI	GGATG	1 cut(s)	471
BtsIMutI	CAGTG	1 cut(s)	418
BveI	ACCTGC	1 cut(s)	383
Cac8I	GCNNGC	1 cut(s)	317
CaiI	CAGNNNCTG	1 cut(s)	398
CciI	TCATGA	1 cut(s)	406
CviAII	CATG	4 cut(s)	92, 106, 256, 407
DdeI	CTNAG	2 cut(s)	372, 552
DpnI	GATC	1 cut(s)	470
DpnII	GATC	1 cut(s)	468
Eam1104I	CTCTTC	1 cut(s)	503
EarI	CTCTTC	1 cut(s)	503
Eco105I	TACGTA	1 cut(s)	592
Eco81I	CCTNAGG	1 cut(s)	552
EcoRII	CCWGG	1 cut(s)	244
EcoT22I	ATGCAT	1 cut(s)	107
FaeI	CATG	4 cut(s)	95, 109, 259, 410
FatI	CATG	4 cut(s)	91, 105, 255, 406
FauNDI	CATATG	1 cut(s)	101
FblI	GTMKAC	1 cut(s)	332
FokI	GGATG	1 cut(s)	478
FspBI	CTAG	2 cut(s)	86, 616
GsaI	CCCAGC	1 cut(s)	402
HaeIII	GGCC	1 cut(s)	607
Hin1II	CATG	4 cut(s)	95, 109, 259, 410
HinfI	GANTC	1 cut(s)	362
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	2 cut(s)	356, 465
Hpy188III	TCNNGA	5 cut(s)	120, 380, 407, 504, 554
Hpy8I	GTNNAC	1 cut(s)	333
HpyAV	CCTTC	3 cut(s)	377, 527, 557
HpyCH4III	ACNGT	1 cut(s)	413
HpyCH4IV	ACGT	2 cut(s)	516, 591
HpyCH4V	TGCA	4 cut(s)	105, 188, 239, 392
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 325
HpyF3I	CTNAG	2 cut(s)	372, 552
HpySE526I	ACGT	2 cut(s)	516, 591
Hsp92II	CATG	4 cut(s)	95, 109, 259, 410
Kzo9I	GATC	1 cut(s)	468
MaeI	CTAG	2 cut(s)	86, 616
MaeII	ACGT	2 cut(s)	516, 591
MalI	GATC	1 cut(s)	470
MboI	GATC	1 cut(s)	468
MboII	GAAGA	3 cut(s)	448, 490, 535
MluCI	AATT	6 cut(s)	115, 164, 192, 301, 417, 507
MlyI	GAGTC	1 cut(s)	356
MnlI	CCTC	2 cut(s)	424, 561
Mph1103I	ATGCAT	1 cut(s)	107
MseI	TTAA	2 cut(s)	210, 300
MslI	CAYNNNNRTG	2 cut(s)	104, 411
MspR9I	CCNGG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	2 cut(s)	141, 325
NdeI	CATATG	1 cut(s)	101
NdeII	GATC	1 cut(s)	468
NlaIII	CATG	4 cut(s)	95, 109, 259, 410
NsiI	ATGCAT	1 cut(s)	107
PagI	TCATGA	1 cut(s)	406
PaqCI	CACCTGC	1 cut(s)	383
PctI	GAATGC	1 cut(s)	373
PfoI	TCCNGGA	1 cut(s)	244
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Ppu21I	YACGTR	1 cut(s)	592
Psp6I	CCWGG	1 cut(s)	244
PspFI	CCCAGC	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	244
PstI	CTGCAG	1 cut(s)	190
PstNI	CAGNNNCTG	1 cut(s)	398
RseI	CAYNNNNRTG	2 cut(s)	104, 411
SaqAI	TTAA	2 cut(s)	210, 300
Sau3AI	GATC	1 cut(s)	468
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	246
SetI	ASST	9 cut(s)	61, 82, 263, 378, 397, 435, 519, 568, 594
SfcI	CTRYAG	1 cut(s)	186
SmiMI	CAYNNNNRTG	2 cut(s)	104, 411
SmlI	CTYRAG	2 cut(s)	454, 502
SmoI	CTYRAG	2 cut(s)	454, 502
SnaBI	TACGTA	1 cut(s)	592
Sse9I	AATT	6 cut(s)	115, 164, 192, 301, 417, 507
SspMI	CTAG	2 cut(s)	86, 616
StyD4I	CCNGG	1 cut(s)	244
TaaI	ACNGT	1 cut(s)	413
TaiI	ACGT	2 cut(s)	519, 594
TaqI	TCGA	1 cut(s)	365
TasI	AATT	6 cut(s)	115, 164, 192, 301, 417, 507
Tru1I	TTAA	2 cut(s)	210, 300
Tru9I	TTAA	2 cut(s)	210, 300
TscAI	CASTG	1 cut(s)	418
TspDTI	ATGAA	3 cut(s)	66, 253, 395
TspRI	CASTG	1 cut(s)	418
XapI	RAATTY	3 cut(s)	115, 164, 192
XmiI	GTMKAC	1 cut(s)	332
XspI	CTAG	2 cut(s)	86, 616
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.