Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Forward (+)

59111664 .. 59118197

Gene Structure 6534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21010

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCATGGCTGTAAATTCAAGAAATCATCTGTGCTGATTATGCCTTTGTTATTCACACAAAAAATTCCCCATGTCAGGGAATACTGCAGAAATTTACAGAGAGTTAAGGGCTTGGGAGAGACTTTGGTGGGTGCATATCCTGGACGAGCCATGAGCTTCATAACCCAGAAAGCCAATCTAAACTCTCCTATCGTTAATTGTTATCCAAGCAAGCCAATATGGCTGTATAGCAAGCAGTCTGTCACATTCAGAGCAGACTCGAATGCTGAGGTTCTGGAAGGATATGCAGGTGCAGGGCTTCATGACAGTGTAATTATGGATAAAGAGGAGAAGATTGTGTGGGATTACTCAAGCGATCGGATGATCTTTGATAGGGGCTTCCAAGTCTCACTCTTCTCAAGAATTGCAGACGTGGGGAAGATATTAGAAGGCCTTTATGGTTGTCCTCAGGACATTGAAGGTGTGGTAAAAGATGGATTGATATACGTAGTTCAGTCAAGGCCACAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

170

Amino Acids

19.12

Weight (kDa)

8.86

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	278
Acc36I	ACCTGC	1 cut(s)	278
AcsI	RAATTY	3 cut(s)	14, 63, 91
AfiI	CCNNNNNNNGG	2 cut(s)	75, 76
AgsI	TTSAA	2 cut(s)	19, 458
AjiI	CACGTC	1 cut(s)	412
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	1 cut(s)	156
AluI	AGCT	1 cut(s)	156
Alw26I	GTCTC	2 cut(s)	113, 391
AoxI	GGCC	2 cut(s)	430, 500
ApoI	RAATTY	3 cut(s)	14, 63, 91
AxyI	CCTNAGG	1 cut(s)	447
BbvCI	CCTCAGC	1 cut(s)	267
BccI	CCATC	1 cut(s)	467
BciT130I	CCWGG	1 cut(s)	141
BcoDI	GTCTC	2 cut(s)	113, 391
BfaI	CTAG	1 cut(s)	511
BfmI	CTRYAG	1 cut(s)	85
BfuAI	ACCTGC	1 cut(s)	278
BglI	GCCNNNNNGGC	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	141
BmgBI	CACGTC	1 cut(s)	412
BmrFI	CCNGG	1 cut(s)	141
Bpu10I	CCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	2 cut(s)	334, 382
BsaAI	YACGTR	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 76
Bse21I	CCTNAGG	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	366
BseLI	CCNNNNNNNGG	2 cut(s)	75, 76
BseMII	CTCAG	2 cut(s)	258, 461
BseRI	GAGGAG	1 cut(s)	341
BsgI	GTGCAG	1 cut(s)	312
Bsh1285I	CGRYCG	1 cut(s)	358
BshFI	GGCC	2 cut(s)	432, 502
BsiEI	CGRYCG	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	75, 76
BsmAI	GTCTC	2 cut(s)	113, 391
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	2 cut(s)	432, 502
Bsp143I	GATC	2 cut(s)	355, 363
BspANI	GGCC	2 cut(s)	432, 502
BspCNI	CTCAG	2 cut(s)	259, 460
BspHI	TCATGA	1 cut(s)	301
BspMAI	CTGCAG	1 cut(s)	89
BspMI	ACCTGC	1 cut(s)	278
BssMI	GATC	2 cut(s)	355, 363
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	308
Bst6I	CTCTTC	1 cut(s)	398
BstBAI	YACGTR	1 cut(s)	487
BstC8I	GCNNGC	2 cut(s)	212, 233
BstDEI	CTNAG	2 cut(s)	267, 447
BstF5I	GGATG	1 cut(s)	366
BstKTI	GATC	2 cut(s)	358, 366
BstMAI	GTCTC	2 cut(s)	113, 391
BstMBI	GATC	2 cut(s)	355, 363
BstMCI	CGRYCG	1 cut(s)	358
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 220
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	85
BstSNI	TACGTA	1 cut(s)	487
Bsu36I	CCTNAGG	1 cut(s)	447
BsuRI	GGCC	2 cut(s)	432, 502
BtrI	CACGTC	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	366
BtsIMutI	CAGTG	1 cut(s)	313
BveI	ACCTGC	1 cut(s)	278
Cac8I	GCNNGC	2 cut(s)	212, 233
CciI	TCATGA	1 cut(s)	301
CviAII	CATG	4 cut(s)	5, 71, 151, 302
DdeI	CTNAG	2 cut(s)	267, 447
DpnI	GATC	2 cut(s)	357, 365
DpnII	GATC	2 cut(s)	355, 363
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
Eco105I	TACGTA	1 cut(s)	487
Eco147I	AGGCCT	1 cut(s)	432
Eco81I	CCTNAGG	1 cut(s)	447
EcoRII	CCWGG	1 cut(s)	139
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	4 cut(s)	8, 74, 154, 305
FatI	CATG	4 cut(s)	4, 70, 150, 301
FokI	GGATG	1 cut(s)	373
FspBI	CTAG	1 cut(s)	511
HaeIII	GGCC	2 cut(s)	432, 502
Hin1II	CATG	4 cut(s)	8, 74, 154, 305
HinfI	GANTC	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	251, 360
Hpy188III	TCNNGA	5 cut(s)	19, 275, 302, 399, 449
HpyAV	CCTTC	3 cut(s)	272, 422, 452
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	2 cut(s)	411, 486
HpyCH4V	TGCA	6 cut(s)	4, 87, 134, 287, 293, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 220
HpyF3I	CTNAG	2 cut(s)	267, 447
HpySE526I	ACGT	2 cut(s)	411, 486
Hsp92II	CATG	4 cut(s)	8, 74, 154, 305
Kzo9I	GATC	2 cut(s)	355, 363
LpnPI	CCDG	8 cut(s)	61, 126, 153, 179, 260, 273, 279, 434
MaeI	CTAG	1 cut(s)	511
MaeII	ACGT	2 cut(s)	411, 486
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	2 cut(s)	357, 365
MboI	GATC	2 cut(s)	355, 363
MboII	GAAGA	3 cut(s)	343, 385, 430
MluCI	AATT	6 cut(s)	14, 63, 91, 196, 312, 402
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	3 cut(s)	262, 319, 456
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	105, 195
MslI	CAYNNNNRTG	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	40, 220
NdeII	GATC	2 cut(s)	355, 363
NlaIII	CATG	4 cut(s)	8, 74, 154, 305
NmuCI	GTSAC	1 cut(s)	241
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	301
PaqCI	CACCTGC	1 cut(s)	278
PceI	AGGCCT	1 cut(s)	432
PctI	GAATGC	1 cut(s)	268
PfoI	TCCNGGA	1 cut(s)	139
Ple19I	CGATCG	1 cut(s)	358
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Ppu21I	YACGTR	1 cut(s)	487
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PstI	CTGCAG	1 cut(s)	89
PvuI	CGATCG	1 cut(s)	358
RseI	CAYNNNNRTG	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	105, 195
Sau3AI	GATC	2 cut(s)	355, 363
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	141
SetI	ASST	6 cut(s)	158, 273, 292, 414, 463, 489
SfcI	CTRYAG	1 cut(s)	85
SmiMI	CAYNNNNRTG	1 cut(s)	306
SmlI	CTYRAG	2 cut(s)	349, 397
SmoI	CTYRAG	2 cut(s)	349, 397
SnaBI	TACGTA	1 cut(s)	487
Sse9I	AATT	6 cut(s)	14, 63, 91, 196, 312, 402
SseBI	AGGCCT	1 cut(s)	432
SspMI	CTAG	1 cut(s)	511
StuI	AGGCCT	1 cut(s)	432
StyD4I	CCNGG	1 cut(s)	139
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	2 cut(s)	414, 489
TaqI	TCGA	1 cut(s)	260
TasI	AATT	6 cut(s)	14, 63, 91, 196, 312, 402
Tru1I	TTAA	2 cut(s)	105, 195
Tru9I	TTAA	2 cut(s)	105, 195
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	148, 290
TspRI	CASTG	1 cut(s)	313
XapI	RAATTY	3 cut(s)	14, 63, 91
XspI	CTAG	1 cut(s)	511
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.