Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Forward (+)

17747440 .. 17748739

Gene Structure 1300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG164500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCCTTGGCCTGGTGATGAGGGTGAACAACGATGGGAACAAGCATGGTTGGCTATAAAAAATGTCTGGGCTTCAAAGTGGAATGAGAGAGCATACTTCAGCACAAGAAAAGCATTCATTATTCACACAACTAATCCATCTTCAGGAGACTCGTCGGAGATATATGCCGAGGTTGTCAAAGGTCTTGGAGAAACCTTAGTTGGAGCTTATCCTGGACGTGCCTTAAGTTTTATTAGCAAGAAAAATGCTCTGGACTCTCCTCAGGTGTTAGGTTACCCTAGCAAACCGGTTGGCCTCTTTATCAGACGGTCCATAATCTTCCGATCCGATTCCAATGGTGAAGATCTTGAAGGTTATGCCGGTGCAGGCCTTTATGACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009631 GO:0009941 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0031967 GO:0031975 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050521 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPDK_N

Protein Analysis

127

Amino Acids

14.14

Weight (kDa)

6.58

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	318
AcuI	CTGAAG	2 cut(s)	82, 126
AfiI	CCNNNNNNNGG	2 cut(s)	11, 143
AflII	CTTAAG	1 cut(s)	223
AgeI	ACCGGT	1 cut(s)	286
AgsI	TTSAA	2 cut(s)	75, 350
AjiI	CACGTC	1 cut(s)	218
AjnI	CCWGG	2 cut(s)	10, 211
AjuI	GAANNNNNNNTTGG	2 cut(s)	183, 215
AluBI	AGCT	1 cut(s)	206
AluI	AGCT	1 cut(s)	206
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	318
AoxI	GGCC	3 cut(s)	8, 292, 367
AsiGI	ACCGGT	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	309
AsuHPI	GGTGA	3 cut(s)	26, 35, 350
AvaII	GGWCC	1 cut(s)	309
AxyI	CCTNAGG	1 cut(s)	261
BccI	CCATC	2 cut(s)	27, 145
BciT130I	CCWGG	2 cut(s)	12, 213
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	279
BfrI	CTTAAG	1 cut(s)	223
BglII	AGATCT	1 cut(s)	343
Bme1390I	CCNGG	2 cut(s)	12, 213
Bme18I	GGWCC	1 cut(s)	309
BmgBI	CACGTC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	309
BmrFI	CCNGG	2 cut(s)	12, 213
BsaJI	CCNNGG	2 cut(s)	5, 168
BsaWI	WCCGGW	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 143
Bse118I	RCCGGY	2 cut(s)	286, 359
Bse21I	CCTNAGG	1 cut(s)	261
BseBI	CCWGG	2 cut(s)	12, 213
BseDI	CCNNGG	2 cut(s)	5, 168
BseLI	CCNNNNNNNGG	2 cut(s)	11, 143
BseMII	CTCAG	1 cut(s)	275
BseRI	GAGGAG	1 cut(s)	249
BsgI	GTGCAG	1 cut(s)	384
BshFI	GGCC	3 cut(s)	10, 294, 369
BshTI	ACCGGT	1 cut(s)	286
BsiSI	CCGG	2 cut(s)	287, 360
BslI	CCNNNNNNNGG	2 cut(s)	11, 143
BsmAI	GTCTC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	113
BsnI	GGCC	3 cut(s)	10, 294, 369
Bsp143I	GATC	2 cut(s)	323, 343
BspANI	GGCC	3 cut(s)	10, 294, 369
BspCNI	CTCAG	1 cut(s)	274
BspPI	GGATC	1 cut(s)	318
BspTI	CTTAAG	1 cut(s)	223
BsrFI	RCCGGY	2 cut(s)	286, 359
BssAI	RCCGGY	2 cut(s)	286, 359
BssECI	CCNNGG	2 cut(s)	5, 168
BssMI	GATC	2 cut(s)	323, 343
BssT1I	CCWWGG	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	12, 213
Bst4CI	ACNGT	1 cut(s)	309
BstAFI	CTTAAG	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	2 cut(s)	196, 261
BstEII	GGTNACC	1 cut(s)	272
BstKTI	GATC	2 cut(s)	326, 346
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	2 cut(s)	323, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	2 cut(s)	12, 213
BstPI	GGTNACC	1 cut(s)	272
BstSCI	CCNGG	2 cut(s)	10, 211
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
Bsu36I	CCTNAGG	1 cut(s)	261
BsuRI	GGCC	3 cut(s)	10, 294, 369
BtrI	CACGTC	1 cut(s)	218
Cac8I	GCNNGC	1 cut(s)	367
Cfr10I	RCCGGY	2 cut(s)	286, 359
Cfr13I	GGNCC	1 cut(s)	309
CspAI	ACCGGT	1 cut(s)	286
CviAII	CATG	1 cut(s)	45
CviJI	RGCY	6 cut(s)	10, 53, 71, 206, 294, 369
CviKI_1	RGCY	6 cut(s)	10, 53, 71, 206, 294, 369
DdeI	CTNAG	2 cut(s)	196, 261
DpnI	GATC	2 cut(s)	325, 345
DpnII	GATC	2 cut(s)	323, 343
Eco130I	CCWWGG	1 cut(s)	5
Eco147I	AGGCCT	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	309
Eco57I	CTGAAG	2 cut(s)	82, 126
Eco81I	CCTNAGG	1 cut(s)	261
Eco91I	GGTNACC	1 cut(s)	272
EcoO65I	GGTNACC	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	10, 211
EcoT14I	CCWWGG	1 cut(s)	5
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	1 cut(s)	48
FaiI	YATR	8 cut(s)	46, 56, 94, 163, 165, 314, 357, 375
FatI	CATG	1 cut(s)	44
FspBI	CTAG	1 cut(s)	279
HaeIII	GGCC	3 cut(s)	10, 294, 369
HapII	CCGG	2 cut(s)	287, 360
Hin1II	CATG	1 cut(s)	48
HinfI	GANTC	3 cut(s)	149, 254, 329
HpaII	CCGG	2 cut(s)	287, 360
HphI	GGTGA	3 cut(s)	26, 35, 350
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	4 cut(s)	157, 305, 323, 328
Hpy188III	TCNNGA	3 cut(s)	144, 251, 347
Hpy8I	GTNNAC	1 cut(s)	26
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	1 cut(s)	344
HpyCH4III	ACNGT	1 cut(s)	309
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	1 cut(s)	365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	2 cut(s)	196, 261
HpySE526I	ACGT	1 cut(s)	217
Hsp92II	CATG	1 cut(s)	48
Kzo9I	GATC	2 cut(s)	323, 343
LmnI	GCTCC	1 cut(s)	203
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	2 cut(s)	325, 345
MboI	GATC	2 cut(s)	323, 343
MboII	GAAGA	3 cut(s)	132, 310, 353
MflI	RGATCY	1 cut(s)	343
MlyI	GAGTC	2 cut(s)	143, 248
MmeI	TCCRAC	2 cut(s)	135, 181
MnlI	CCTC	4 cut(s)	13, 163, 270, 305
MseI	TTAA	1 cut(s)	224
MspCI	CTTAAG	1 cut(s)	223
MspI	CCGG	2 cut(s)	287, 360
MspR9I	CCNGG	2 cut(s)	12, 213
Mva1269I	GAATGC	1 cut(s)	113
MvaI	CCWGG	2 cut(s)	12, 213
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	2 cut(s)	323, 343
NlaIII	CATG	1 cut(s)	48
NmeAIII	GCCGAG	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	369
PctI	GAATGC	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	329
PfoI	TCCNGGA	1 cut(s)	211
PinAI	ACCGGT	1 cut(s)	286
PleI	GAGTC	2 cut(s)	143, 248
PpsI	GAGTC	2 cut(s)	143, 248
Psp6I	CCWGG	2 cut(s)	10, 211
PspEI	GGTNACC	1 cut(s)	272
PspGI	CCWGG	2 cut(s)	10, 211
PspPI	GGNCC	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	343
SaqAI	TTAA	1 cut(s)	224
Sau3AI	GATC	2 cut(s)	323, 343
Sau96I	GGNCC	1 cut(s)	309
SchI	GAGTC	2 cut(s)	143, 248
ScrFI	CCNGG	2 cut(s)	12, 213
SetI	ASST	9 cut(s)	174, 184, 197, 208, 220, 267, 274, 355, 383
SinI	GGWCC	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
SseBI	AGGCCT	1 cut(s)	369
SspMI	CTAG	1 cut(s)	279
StuI	AGGCCT	1 cut(s)	369
StyD4I	CCNGG	2 cut(s)	10, 211
StyI	CCWWGG	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	309
TaiI	ACGT	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	106
Vha464I	CTTAAG	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	309
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.