Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004864.1

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Forward (+)

61875 .. 62937

Gene Structure 1063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004864.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgtcagggaatactgcagaaatttacagagagatagttaagggcttgggagagactttggtgggtgcatatcctggacgagccatgagcttcataacccagaaagccaatctaaactctcctattgttaattgttatccaagcaagccaatatggctgtatagcaagcactctgtcacattcagagcagactcgaatgctgaggttctggaaggatatgcaggtgctgggcttcatgacagtgtaattatggataaagaggagaagattgtgtgggattactcaagcgatcggttgatctttgataggggctttcaagtctcactcttctcaagaattgcagacgtggggaagatattagaaggcctttatggttgtcctcagcacattgaaggtgtggtaaaagatggattgatatacgtagttcagtcaaggccacaaatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

148

Amino Acids

16.42

Weight (kDa)

5.89

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	212
Acc36I	ACCTGC	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	317, 392
AjiI	CACGTC	1 cut(s)	346
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	1 cut(s)	90
AluI	AGCT	1 cut(s)	90
Alw26I	GTCTC	2 cut(s)	47, 325
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	2 cut(s)	364, 434
ApoI	RAATTY	1 cut(s)	21
BbvCI	CCTCAGC	2 cut(s)	201, 381
BccI	CCATC	1 cut(s)	401
BciT130I	CCWGG	1 cut(s)	75
BcoDI	GTCTC	2 cut(s)	47, 325
BfaI	CTAG	1 cut(s)	445
BfmI	CTRYAG	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	212
BglI	GCCNNNNNGGC	1 cut(s)	154
Bme1390I	CCNGG	1 cut(s)	75
BmgBI	CACGTC	1 cut(s)	346
BmrFI	CCNGG	1 cut(s)	75
Bpu10I	CCTNAGC	2 cut(s)	201, 381
BpuEI	CTTGAG	2 cut(s)	268, 316
BsaAI	YACGTR	1 cut(s)	421
BseBI	CCWGG	1 cut(s)	75
BseMII	CTCAG	2 cut(s)	192, 395
BseRI	GAGGAG	1 cut(s)	275
BseYI	CCCAGC	1 cut(s)	227
Bsh1285I	CGRYCG	1 cut(s)	292
BshFI	GGCC	2 cut(s)	366, 436
BsiEI	CGRYCG	1 cut(s)	292
BsmAI	GTCTC	2 cut(s)	47, 325
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	2 cut(s)	366, 436
Bsp143I	GATC	2 cut(s)	289, 297
BspANI	GGCC	2 cut(s)	366, 436
BspCNI	CTCAG	2 cut(s)	193, 394
BspHI	TCATGA	1 cut(s)	235
BspMAI	CTGCAG	1 cut(s)	19
BspMI	ACCTGC	1 cut(s)	212
BssMI	GATC	2 cut(s)	289, 297
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	242
Bst6I	CTCTTC	1 cut(s)	332
BstBAI	YACGTR	1 cut(s)	421
BstC8I	GCNNGC	2 cut(s)	146, 167
BstDEI	CTNAG	2 cut(s)	201, 381
BstKTI	GATC	2 cut(s)	292, 300
BstMAI	GTCTC	2 cut(s)	47, 325
BstMBI	GATC	2 cut(s)	289, 297
BstMCI	CGRYCG	1 cut(s)	292
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	73
BstSFI	CTRYAG	1 cut(s)	15
BstSNI	TACGTA	1 cut(s)	421
BsuRI	GGCC	2 cut(s)	366, 436
BtrI	CACGTC	1 cut(s)	346
BtsIMutI	CAGTG	1 cut(s)	247
BveI	ACCTGC	1 cut(s)	212
Cac8I	GCNNGC	2 cut(s)	146, 167
CaiI	CAGNNNCTG	1 cut(s)	227
CciI	TCATGA	1 cut(s)	235
CviAII	CATG	2 cut(s)	85, 236
DdeI	CTNAG	2 cut(s)	201, 381
DpnI	GATC	2 cut(s)	291, 299
DpnII	GATC	2 cut(s)	289, 297
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
Eco105I	TACGTA	1 cut(s)	421
Eco147I	AGGCCT	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	73
FaeI	CATG	2 cut(s)	88, 239
FatI	CATG	2 cut(s)	84, 235
FspBI	CTAG	1 cut(s)	445
GsaI	CCCAGC	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	366, 436
Hin1II	CATG	2 cut(s)	88, 239
HinfI	GANTC	1 cut(s)	191
Hpy188I	TCNGA	1 cut(s)	185
Hpy188III	TCNNGA	3 cut(s)	209, 236, 333
HpyAV	CCTTC	3 cut(s)	206, 356, 386
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	2 cut(s)	345, 420
HpyCH4V	TGCA	4 cut(s)	17, 68, 221, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpyF3I	CTNAG	2 cut(s)	201, 381
HpySE526I	ACGT	2 cut(s)	345, 420
Hsp92II	CATG	2 cut(s)	88, 239
Kzo9I	GATC	2 cut(s)	289, 297
LpnPI	CCDG	6 cut(s)	60, 87, 113, 194, 207, 213
MaeI	CTAG	1 cut(s)	445
MaeII	ACGT	2 cut(s)	345, 420
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	2 cut(s)	291, 299
MboI	GATC	2 cut(s)	289, 297
MboII	GAAGA	3 cut(s)	277, 319, 364
MluCI	AATT	4 cut(s)	21, 130, 246, 336
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	3 cut(s)	196, 253, 390
MseI	TTAA	2 cut(s)	39, 129
MslI	CAYNNNNRTG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	75
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	154
NdeII	GATC	2 cut(s)	289, 297
NlaIII	CATG	2 cut(s)	88, 239
NmuCI	GTSAC	1 cut(s)	175
PagI	TCATGA	1 cut(s)	235
PaqCI	CACCTGC	1 cut(s)	212
PceI	AGGCCT	1 cut(s)	366
PctI	GAATGC	1 cut(s)	202
PfoI	TCCNGGA	1 cut(s)	73
Ple19I	CGATCG	1 cut(s)	292
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
Ppu21I	YACGTR	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	73
PstI	CTGCAG	1 cut(s)	19
PstNI	CAGNNNCTG	1 cut(s)	227
PvuI	CGATCG	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	39, 129
Sau3AI	GATC	2 cut(s)	289, 297
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	75
SetI	ASST	6 cut(s)	92, 207, 226, 348, 397, 423
SfcI	CTRYAG	1 cut(s)	15
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	2 cut(s)	283, 331
SmoI	CTYRAG	2 cut(s)	283, 331
SnaBI	TACGTA	1 cut(s)	421
Sse9I	AATT	4 cut(s)	21, 130, 246, 336
SseBI	AGGCCT	1 cut(s)	366
SspMI	CTAG	1 cut(s)	445
StuI	AGGCCT	1 cut(s)	366
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	2 cut(s)	348, 423
TaqI	TCGA	1 cut(s)	194
TasI	AATT	4 cut(s)	21, 130, 246, 336
Tru1I	TTAA	2 cut(s)	39, 129
Tru9I	TTAA	2 cut(s)	39, 129
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	2 cut(s)	82, 224
TspRI	CASTG	1 cut(s)	247
XapI	RAATTY	1 cut(s)	21
XspI	CTAG	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.