Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Forward (+)

46547120 .. 46548763

Gene Structure 1644 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG412900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAGTCTTGCCGAGTCTCCACTACACTCTTCTAGCAGTGATGACTTTGCGGGGTTGCCTGAGAGAGAACTAGACTCCGGTTCTTCCGAGCCATCACCAGAGGAAGAAGATGACGAAGATAAAGAAGCTGATGATGTTGAAAGTGAGAGCAGGATAAAAAGGCGTAGGGGAGATGATTTGGAAAGCGTAGAGGAAACTAATGGGTCGACCTTACAAGTACTTTCAGAACAAAACTCAGAAGCATCTGCAATGTGTGCACATCCTGGGTCATTTGGAGATCTGTGTTTTCTTTGTGGCCAGAGGTTGATTGAGCAGTCTGGTGTGACATTTGGGTACATACTCAAGAGAGGGAAGATTATCAGGCAGAAATTTGTGCACGACTACAAGACTCTGGTGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

133

Amino Acids

14.69

Weight (kDa)

4.45

Isoelectric Point (pI)

75.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	206
AciI	CCGC	1 cut(s)	50
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	1 cut(s)	368
AfaI	GTAC	2 cut(s)	219, 335
AgsI	TTSAA	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
Alw21I	GWGCWC	2 cut(s)	259, 378
Alw26I	GTCTC	1 cut(s)	21
Alw44I	GTGCAC	2 cut(s)	255, 374
AoxI	GGCC	1 cut(s)	295
ApaLI	GTGCAC	2 cut(s)	255, 374
ApoI	RAATTY	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	87
BaeGI	GKGCMC	2 cut(s)	259, 378
BalI	TGGCCA	1 cut(s)	297
Bbv12I	GWGCWC	2 cut(s)	259, 378
BccI	CCATC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	2 cut(s)	33, 71
BglII	AGATCT	1 cut(s)	277
BmcAI	AGTACT	1 cut(s)	219
Bme1390I	CCNGG	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	263
BsaWI	WCCGGW	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	263
BseGI	GGATG	1 cut(s)	259
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	51, 249
BseSI	GKGCMC	2 cut(s)	259, 378
BshFI	GGCC	1 cut(s)	297
BsiHKAI	GWGCWC	2 cut(s)	259, 378
BsiSI	CCGG	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	297
Bsp1286I	GDGCHC	2 cut(s)	259, 378
Bsp143I	GATC	1 cut(s)	277
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	2 cut(s)	52, 248
BsrDI	GCAATG	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	264
Bst6I	CTCTTC	1 cut(s)	34
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstDEI	CTNAG	2 cut(s)	60, 235
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	262
BstSLI	GKGCMC	2 cut(s)	259, 378
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	43
Csp6I	GTAC	2 cut(s)	218, 334
CviJI	RGCY	3 cut(s)	91, 128, 297
CviKI_1	RGCY	3 cut(s)	91, 128, 297
CviQI	GTAC	2 cut(s)	218, 334
DdeI	CTNAG	2 cut(s)	60, 235
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	262
FaiI	YATR	1 cut(s)	338
FauI	CCCGC	1 cut(s)	43
FblI	GTMKAC	1 cut(s)	206
FokI	GGATG	1 cut(s)	246
FspBI	CTAG	2 cut(s)	33, 71
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HinfI	GANTC	4 cut(s)	4, 14, 74, 388
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	87
Hpy166II	GTNNAC	3 cut(s)	207, 257, 376
Hpy188I	TCNGA	3 cut(s)	88, 226, 238
Hpy188III	TCNNGA	1 cut(s)	343
Hpy8I	GTNNAC	3 cut(s)	207, 257, 376
HpyCH4IV	ACGT	1 cut(s)	398
HpyCH4V	TGCA	3 cut(s)	248, 257, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	60, 235
HpySE526I	ACGT	1 cut(s)	398
Kzo9I	GATC	1 cut(s)	277
LweI	GCATC	1 cut(s)	251
MaeI	CTAG	2 cut(s)	33, 71
MaeII	ACGT	1 cut(s)	398
MaeIII	GTNAC	2 cut(s)	322, 394
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	6 cut(s)	21, 75, 116, 119, 128, 364
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	2 cut(s)	259, 378
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	1 cut(s)	368
MluNI	TGGCCA	1 cut(s)	297
MlyI	GAGTC	4 cut(s)	13, 23, 68, 382
MnlI	CCTC	4 cut(s)	94, 184, 294, 341
Mox20I	TGGCCA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	297
Msp20I	TGGCCA	1 cut(s)	297
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	1 cut(s)	277
NmeAIII	GCCGAG	1 cut(s)	37
NmuCI	GTSAC	2 cut(s)	322, 394
PleI	GAGTC	4 cut(s)	12, 22, 68, 382
PpsI	GAGTC	4 cut(s)	12, 22, 68, 382
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	277
RsaI	GTAC	2 cut(s)	219, 335
RsaNI	GTAC	2 cut(s)	218, 334
SalI	GTCGAC	1 cut(s)	205
Sau3AI	GATC	1 cut(s)	277
ScaI	AGTACT	1 cut(s)	219
SchI	GAGTC	4 cut(s)	13, 23, 68, 382
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	2 cut(s)	259, 378
SetI	ASST	4 cut(s)	130, 212, 305, 401
SfaNI	GCATC	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	1 cut(s)	368
SsiI	CCGC	1 cut(s)	50
SspMI	CTAG	2 cut(s)	33, 71
StyD4I	CCNGG	1 cut(s)	262
TaiI	ACGT	1 cut(s)	401
TaqI	TCGA	1 cut(s)	206
TasI	AATT	1 cut(s)	368
TatI	WGTACW	1 cut(s)	217
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	2 cut(s)	322, 394
Tsp45I	GTSAC	2 cut(s)	322, 394
TspRI	CASTG	1 cut(s)	43
VneI	GTGCAC	2 cut(s)	255, 374
XapI	RAATTY	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	206
XspI	CTAG	2 cut(s)	33, 71
ZrmI	AGTACT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.