Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Reverse (-)

74312545 .. 74314615

Gene Structure 2071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG519500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGTATCTCTTTTGTATCTCTTTTGCGACTGTTGCTGTGATTGTTGTGGTGCAAGAGCTGAAGACTAAGATGCAAAGTTCAGGAATGCCTTGGCCTGGTGATGAGGGTGAACAACGATGGGAACAAGCATGGTTGGCTATAAAAAAAGTCATTGTTTTTCTATTCTCCCAGAAAAGTTACAAGCCCCCTAAGAAGACTTTAACAGAAAAGGTGCTTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009631 GO:0009941 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0031967 GO:0031975 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050521 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPDK_N

Protein Analysis

73

Amino Acids

8.38

Weight (kDa)

9.42

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	95
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
AoxI	GGCC	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	110, 119
BbsI	GAAGAC	2 cut(s)	68, 200
BccI	CCATC	1 cut(s)	111
BciT130I	CCWGG	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	60
BpiI	GAAGAC	2 cut(s)	68, 200
BsaJI	CCNNGG	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	95
BshFI	GGCC	1 cut(s)	94
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmI	GAATGC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	94
BspANI	GGCC	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	2 cut(s)	66, 189
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 134
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	94
BstV2I	GAAGAC	2 cut(s)	68, 200
BsuRI	GGCC	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	216
CviAII	CATG	1 cut(s)	129
CviJI	RGCY	4 cut(s)	58, 94, 137, 184
CviKI_1	RGCY	4 cut(s)	58, 94, 137, 184
DdeI	CTNAG	2 cut(s)	66, 189
Eco130I	CCWWGG	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	1 cut(s)	132
FaiI	YATR	2 cut(s)	130, 140
FatI	CATG	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	94
Hin1II	CATG	1 cut(s)	132
HphI	GGTGA	2 cut(s)	110, 119
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188III	TCNNGA	1 cut(s)	81
Hpy8I	GTNNAC	1 cut(s)	110
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	2 cut(s)	52, 73
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 134
HpyF3I	CTNAG	2 cut(s)	66, 189
Hsp92II	CATG	1 cut(s)	132
LpnPI	CCDG	4 cut(s)	66, 81, 108, 182
LweI	GCATC	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	176
MboII	GAAGA	2 cut(s)	73, 205
MnlI	CCTC	1 cut(s)	97
MseI	TTAA	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	32, 134
NlaIII	CATG	1 cut(s)	132
PctI	GAATGC	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	96
SetI	ASST	2 cut(s)	60, 213
SfaNI	GCATC	1 cut(s)	60
SgeI	CNNG	9 cut(s)	65, 93, 102, 107, 108, 137, 141, 181, 193
StyD4I	CCNGG	1 cut(s)	94
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.