Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003321.1

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Forward (+)

5441 .. 7811

Gene Structure 2371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003321.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

atgtcctttgccggcagtgatgactttgccgggttgcctgagagagaactagactccggttcttccgagccatcaccagaggaagaagataaagaagctgatgatgttgaaagtgagagcaggataaaaaggcgtaggggagatgttttggaaagcggagaggaaactaatgggtcgaccttacaagtactttcagaacaaaactcagaagcatctgcaatgtgtgcacatcctgggtcatttggagatctgtgttttctttgtggccagaggttgattgagcagtctggtgtgacatttgggtacatactcaagagagggaagattatcaggcagaaatttgtgcacgactacaagactctgatagttaagggcttgggagagactttggtgggtgcatatcctggacaagccatgagcttcataacccagaaagcctatctaaactctcctattgttaattgttatccaagcaagccagtagggctgtataccaagcagtctgtcatattcagaacagactcgaatgctaaggttctggaaggatatgcaggtgctgggcttcatgacagtgtaattatggataaagaggtgaagattgtgtgggattactcaagcaatcggatgatctttgataggggcttccaagtctcactcttctcaagaattgctgacgtggggaagatattagaaggctgttatggttgtcctcaggacattgaaggtgtggtaaaagatggattgatatacgtagttcagtcaaggccacaaatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

258

Amino Acids

28.36

Weight (kDa)

4.99

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	542
Acc36I	ACCTGC	1 cut(s)	542
AccI	GTMKAC	2 cut(s)	176, 491
AciI	CCGC	1 cut(s)	156
AcoI	YGGCCR	1 cut(s)	265
AcsI	RAATTY	1 cut(s)	338
AfaI	GTAC	2 cut(s)	189, 305
AgsI	TTSAA	2 cut(s)	110, 722
AjiI	CACGTC	1 cut(s)	676
AjnI	CCWGG	2 cut(s)	232, 403
AluBI	AGCT	2 cut(s)	98, 420
AluI	AGCT	2 cut(s)	98, 420
Alw21I	GWGCWC	2 cut(s)	229, 348
Alw26I	GTCTC	2 cut(s)	377, 655
Alw44I	GTGCAC	2 cut(s)	225, 344
AlwNI	CAGNNNCTG	1 cut(s)	557
AoxI	GGCC	2 cut(s)	265, 764
ApaLI	GTGCAC	2 cut(s)	225, 344
ApoI	RAATTY	1 cut(s)	338
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	2 cut(s)	66, 604
AxyI	CCTNAGG	1 cut(s)	711
BaeGI	GKGCMC	2 cut(s)	229, 348
BalI	TGGCCA	1 cut(s)	267
Bbv12I	GWGCWC	2 cut(s)	229, 348
BccI	CCATC	2 cut(s)	79, 731
BciT130I	CCWGG	2 cut(s)	234, 405
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	2 cut(s)	377, 655
BfaI	CTAG	2 cut(s)	50, 775
BfuAI	ACCTGC	1 cut(s)	542
BglI	GCCNNNNNGGC	1 cut(s)	484
BglII	AGATCT	1 cut(s)	247
BmcAI	AGTACT	1 cut(s)	189
Bme1390I	CCNGG	3 cut(s)	31, 234, 405
BmgBI	CACGTC	1 cut(s)	676
BmrFI	CCNGG	3 cut(s)	31, 234, 405
BmsI	GCATC	1 cut(s)	221
Bpu10I	CCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	3 cut(s)	296, 598, 646
BpuMI	CCSGG	1 cut(s)	31
BsaAI	YACGTR	1 cut(s)	751
BsaJI	CCNNGG	1 cut(s)	233
BsaWI	WCCGGW	1 cut(s)	56
Bse118I	RCCGGY	1 cut(s)	11
Bse1I	ACTGG	1 cut(s)	479
Bse21I	CCTNAGG	1 cut(s)	711
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	2 cut(s)	234, 405
BseDI	CCNNGG	1 cut(s)	233
BseGI	GGATG	2 cut(s)	229, 630
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	3 cut(s)	30, 219, 725
BseNI	ACTGG	1 cut(s)	479
BseSI	GKGCMC	2 cut(s)	229, 348
BseYI	CCCAGC	1 cut(s)	557
BshFI	GGCC	2 cut(s)	267, 766
BsiHKAI	GWGCWC	2 cut(s)	229, 348
BsiSI	CCGG	3 cut(s)	12, 30, 57
BsmAI	GTCTC	2 cut(s)	377, 655
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	2 cut(s)	267, 766
Bsp1286I	GDGCHC	2 cut(s)	229, 348
Bsp143I	GATC	2 cut(s)	247, 627
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	2 cut(s)	267, 766
BspCNI	CTCAG	3 cut(s)	31, 218, 724
BspHI	TCATGA	1 cut(s)	565
BspMI	ACCTGC	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	479
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	233
BssMI	GATC	2 cut(s)	247, 627
BssNAI	GTATAC	1 cut(s)	492
Bst1107I	GTATAC	1 cut(s)	492
Bst2UI	CCWGG	2 cut(s)	234, 405
Bst4CI	ACNGT	1 cut(s)	572
Bst6I	CTCTTC	1 cut(s)	662
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstBAI	YACGTR	1 cut(s)	751
BstC8I	GCNNGC	2 cut(s)	13, 476
BstDEI	CTNAG	4 cut(s)	39, 205, 531, 711
BstF5I	GGATG	2 cut(s)	229, 630
BstKTI	GATC	2 cut(s)	250, 630
BstMAI	GTCTC	2 cut(s)	377, 655
BstMBI	GATC	2 cut(s)	247, 627
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 484
BstNI	CCWGG	2 cut(s)	234, 405
BstSCI	CCNGG	3 cut(s)	29, 232, 403
BstSLI	GKGCMC	2 cut(s)	229, 348
BstSNI	TACGTA	1 cut(s)	751
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BstZ17I	GTATAC	1 cut(s)	492
Bsu36I	CCTNAGG	1 cut(s)	711
BsuRI	GGCC	2 cut(s)	267, 766
BtrI	CACGTC	1 cut(s)	676
BtsCI	GGATG	2 cut(s)	229, 630
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	22, 577
BveI	ACCTGC	1 cut(s)	542
Cac8I	GCNNGC	2 cut(s)	13, 476
CaiI	CAGNNNCTG	1 cut(s)	557
CciI	TCATGA	1 cut(s)	565
Cfr10I	RCCGGY	1 cut(s)	11
Csp6I	GTAC	2 cut(s)	188, 304
CviAII	CATG	2 cut(s)	415, 566
CviQI	GTAC	2 cut(s)	188, 304
DdeI	CTNAG	4 cut(s)	39, 205, 531, 711
DpnI	GATC	2 cut(s)	249, 629
DpnII	GATC	2 cut(s)	247, 627
EaeI	YGGCCR	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	662
EarI	CTCTTC	1 cut(s)	662
Eco105I	TACGTA	1 cut(s)	751
Eco81I	CCTNAGG	1 cut(s)	711
EcoRII	CCWGG	2 cut(s)	232, 403
FaeI	CATG	2 cut(s)	418, 569
FatI	CATG	2 cut(s)	414, 565
FblI	GTMKAC	2 cut(s)	176, 491
FokI	GGATG	2 cut(s)	216, 637
FspBI	CTAG	2 cut(s)	50, 775
GsaI	CCCAGC	1 cut(s)	561
HaeIII	GGCC	2 cut(s)	267, 766
HapII	CCGG	3 cut(s)	12, 30, 57
Hin1II	CATG	2 cut(s)	418, 569
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HinfI	GANTC	3 cut(s)	53, 358, 521
HpaII	CCGG	3 cut(s)	12, 30, 57
HphI	GGTGA	2 cut(s)	66, 604
Hpy166II	GTNNAC	4 cut(s)	177, 227, 346, 492
Hpy188I	TCNGA	6 cut(s)	67, 196, 208, 363, 515, 624
Hpy188III	TCNNGA	5 cut(s)	313, 539, 566, 663, 713
Hpy8I	GTNNAC	4 cut(s)	177, 227, 346, 492
HpyAV	CCTTC	3 cut(s)	536, 686, 716
HpyCH4III	ACNGT	1 cut(s)	572
HpyCH4IV	ACGT	2 cut(s)	675, 750
HpyCH4V	TGCA	5 cut(s)	218, 227, 346, 398, 551
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 484
HpyF3I	CTNAG	4 cut(s)	39, 205, 531, 711
HpySE526I	ACGT	2 cut(s)	675, 750
Hsp92II	CATG	2 cut(s)	418, 569
KroI	GCCGGC	1 cut(s)	11
KroNI	GCCGGC	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	247, 627
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	2 cut(s)	50, 775
MaeII	ACGT	2 cut(s)	675, 750
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	2 cut(s)	249, 629
MboI	GATC	2 cut(s)	247, 627
MboII	GAAGA	7 cut(s)	54, 95, 98, 334, 607, 649, 694
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	2 cut(s)	229, 348
MlsI	TGGCCA	1 cut(s)	267
MluCI	AATT	4 cut(s)	338, 460, 576, 666
MluNI	TGGCCA	1 cut(s)	267
MlyI	GAGTC	3 cut(s)	47, 352, 515
MnlI	CCTC	6 cut(s)	73, 154, 264, 311, 583, 720
Mox20I	TGGCCA	1 cut(s)	267
MroNI	GCCGGC	1 cut(s)	11
MscI	TGGCCA	1 cut(s)	267
MseI	TTAA	2 cut(s)	369, 459
MslI	CAYNNNNRTG	1 cut(s)	570
Msp20I	TGGCCA	1 cut(s)	267
MspI	CCGG	3 cut(s)	12, 30, 57
MspR9I	CCNGG	3 cut(s)	31, 234, 405
Mva1269I	GAATGC	1 cut(s)	532
MvaI	CCWGG	2 cut(s)	234, 405
MwoI	GCNNNNNNNGC	2 cut(s)	224, 484
NaeI	GCCGGC	1 cut(s)	13
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	2 cut(s)	247, 627
NgoMIV	GCCGGC	1 cut(s)	11
NlaIII	CATG	2 cut(s)	418, 569
NmuCI	GTSAC	1 cut(s)	292
PagI	TCATGA	1 cut(s)	565
PaqCI	CACCTGC	1 cut(s)	542
PctI	GAATGC	1 cut(s)	532
PdiI	GCCGGC	1 cut(s)	13
PfoI	TCCNGGA	1 cut(s)	403
PleI	GAGTC	3 cut(s)	47, 352, 515
PpsI	GAGTC	3 cut(s)	47, 352, 515
Ppu21I	YACGTR	1 cut(s)	751
Psp6I	CCWGG	2 cut(s)	232, 403
PspFI	CCCAGC	1 cut(s)	557
PspGI	CCWGG	2 cut(s)	232, 403
PstNI	CAGNNNCTG	1 cut(s)	557
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	2 cut(s)	189, 305
RsaNI	GTAC	2 cut(s)	188, 304
RseI	CAYNNNNRTG	1 cut(s)	570
SalI	GTCGAC	1 cut(s)	175
SaqAI	TTAA	2 cut(s)	369, 459
Sau3AI	GATC	2 cut(s)	247, 627
ScaI	AGTACT	1 cut(s)	189
SchI	GAGTC	3 cut(s)	47, 352, 515
ScrFI	CCNGG	3 cut(s)	31, 234, 405
SduI	GDGCHC	2 cut(s)	229, 348
SfaNI	GCATC	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	3 cut(s)	311, 613, 661
SmoI	CTYRAG	3 cut(s)	311, 613, 661
SnaBI	TACGTA	1 cut(s)	751
Sse9I	AATT	4 cut(s)	338, 460, 576, 666
SsiI	CCGC	1 cut(s)	156
SspMI	CTAG	2 cut(s)	50, 775
StyD4I	CCNGG	3 cut(s)	29, 232, 403
TaaI	ACNGT	1 cut(s)	572
TaiI	ACGT	2 cut(s)	678, 753
TaqI	TCGA	2 cut(s)	176, 524
TasI	AATT	4 cut(s)	338, 460, 576, 666
TatI	WGTACW	1 cut(s)	187
Tru1I	TTAA	2 cut(s)	369, 459
Tru9I	TTAA	2 cut(s)	369, 459
TscAI	CASTG	2 cut(s)	22, 577
TseFI	GTSAC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	2 cut(s)	412, 554
TspRI	CASTG	2 cut(s)	22, 577
VneI	GTGCAC	2 cut(s)	225, 344
XapI	RAATTY	1 cut(s)	338
XmiI	GTMKAC	2 cut(s)	176, 491
XspI	CTAG	2 cut(s)	50, 775
ZrmI	AGTACT	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.