Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Forward (+)

54759643 .. 54761655

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G036280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAAGAGTACTTCAAGAATACCTTGGCCTGGTGATGAAGGTGACGAGAGGTGGAATCAAGCTTGGTGTGCAATAAAGAAGTGGAATGAAAGAGCTTTTATTAGTTGTAAGAAAAAATCATCTGTGCTGATTATGCCTCTGTTATTCACACAAAGAATTAATCCCTTGTCAGGGAATACTGCAGAAATTTACACAGAGGTTAATTGTTATCCAAGCAAGCCAATAGGGCTGTATAGCAAGAAGTCTATCATATTCAGATCAGACTCAAATGCTGAGGATGTGGAAGGATATGCTGGTGCTGGGCTTTATGACAGTTTAATCATGGATAAAGAGGAGAAGATTGTATTGGATTACACAAGCGATCGGATAATCATTGATAGGGCCTTGCAGGTCTCACTCTTCTCAAGAATTTCCGAGACGGGAAAGATATTTGAAGGCCTTTATGGTTGTCCTCAGGACATTGAAGGTGTGGTGAAAGATGGATTGATATATGTAGTTCAGTCAAGGCCACAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

172

Amino Acids

19.47

Weight (kDa)

5.63

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	379
AcsI	RAATTY	2 cut(s)	186, 408
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	3 cut(s)	29, 170, 171
AgsI	TTSAA	3 cut(s)	15, 434, 464
AjnI	CCWGG	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AluBI	AGCT	2 cut(s)	62, 95
AluI	AGCT	2 cut(s)	62, 95
Alw26I	GTCTC	2 cut(s)	397, 410
AoxI	GGCC	4 cut(s)	26, 381, 436, 506
ApoI	RAATTY	2 cut(s)	186, 408
AseI	ATTAAT	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	381
AsuHPI	GGTGA	3 cut(s)	44, 53, 484
AxyI	CCTNAGG	1 cut(s)	453
BbvCI	CCTCAGC	1 cut(s)	273
BccI	CCATC	1 cut(s)	473
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	2 cut(s)	397, 410
BfmI	CTRYAG	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	379
BglI	GCCNNNNNGGC	1 cut(s)	226
BmcAI	AGTACT	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	388
BsaI	GGTCTC	1 cut(s)	397
BsaJI	CCNNGG	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 170, 171
Bse21I	CCTNAGG	1 cut(s)	453
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	23
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	3 cut(s)	29, 170, 171
BseMII	CTCAG	2 cut(s)	264, 467
BseRI	GAGGAG	1 cut(s)	347
BseYI	CCCAGC	1 cut(s)	299
Bsh1285I	CGRYCG	1 cut(s)	364
BshFI	GGCC	4 cut(s)	28, 383, 438, 508
BsiEI	CGRYCG	1 cut(s)	364
BslI	CCNNNNNNNGG	3 cut(s)	29, 170, 171
BsmAI	GTCTC	2 cut(s)	397, 410
BsmBI	CGTCTC	1 cut(s)	410
BsnI	GGCC	4 cut(s)	28, 383, 438, 508
Bso31I	GGTCTC	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	257, 361
BspANI	GGCC	4 cut(s)	28, 383, 438, 508
BspCNI	CTCAG	2 cut(s)	265, 466
BspMAI	CTGCAG	1 cut(s)	184
BspMI	ACCTGC	1 cut(s)	379
BspTNI	GGTCTC	1 cut(s)	397
BssECI	CCNNGG	1 cut(s)	23
BssMI	GATC	2 cut(s)	257, 361
BssT1I	CCWWGG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	2 cut(s)	273, 453
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	2 cut(s)	260, 364
BstMAI	GTCTC	2 cut(s)	397, 410
BstMBI	GATC	2 cut(s)	257, 361
BstMCI	CGRYCG	1 cut(s)	364
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 133, 226
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstSFI	CTRYAG	1 cut(s)	180
Bsu36I	CCTNAGG	1 cut(s)	453
BsuRI	GGCC	4 cut(s)	28, 383, 438, 508
BtsCI	GGATG	1 cut(s)	283
BveI	ACCTGC	1 cut(s)	379
Cac8I	GCNNGC	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	381
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	1 cut(s)	322
CviJI	RGCY	9 cut(s)	28, 62, 95, 220, 229, 304, 383, 438, 508
CviKI_1	RGCY	9 cut(s)	28, 62, 95, 220, 229, 304, 383, 438, 508
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	2 cut(s)	273, 453
DpnI	GATC	2 cut(s)	259, 363
DpnII	GATC	2 cut(s)	257, 361
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Eco130I	CCWWGG	1 cut(s)	23
Eco147I	AGGCCT	1 cut(s)	438
Eco31I	GGTCTC	1 cut(s)	397
Eco81I	CCTNAGG	1 cut(s)	453
EcoO109I	RGGNCCY	1 cut(s)	381
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	23
Esp3I	CGTCTC	1 cut(s)	410
FaeI	CATG	1 cut(s)	325
FaiI	YATR	9 cut(s)	134, 234, 251, 291, 309, 323, 444, 490, 492
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FatI	CATG	1 cut(s)	321
FokI	GGATG	1 cut(s)	290
GsaI	CCCAGC	1 cut(s)	303
HaeIII	GGCC	4 cut(s)	28, 383, 438, 508
Hin1II	CATG	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	2 cut(s)	55, 263
HphI	GGTGA	3 cut(s)	44, 53, 484
Hpy188I	TCNGA	4 cut(s)	257, 262, 366, 415
Hpy188III	TCNNGA	3 cut(s)	15, 405, 455
HpyAV	CCTTC	4 cut(s)	32, 278, 428, 458
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4V	TGCA	3 cut(s)	71, 182, 388
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 133, 226
HpyF3I	CTNAG	2 cut(s)	273, 453
Hsp92II	CATG	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	257, 361
LpnPI	CCDG	7 cut(s)	15, 42, 156, 279, 285, 374, 440
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	2 cut(s)	259, 363
MboI	GATC	2 cut(s)	257, 361
MboII	GAAGA	3 cut(s)	16, 349, 391
MluCI	AATT	4 cut(s)	156, 186, 202, 408
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	6 cut(s)	42, 147, 190, 268, 325, 462
MseI	TTAA	3 cut(s)	159, 201, 317
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	68, 133, 226
NdeII	GATC	2 cut(s)	257, 361
NlaIII	CATG	1 cut(s)	325
NmuCI	GTSAC	1 cut(s)	41
PceI	AGGCCT	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	55
Ple19I	CGATCG	1 cut(s)	364
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
PshBI	ATTAAT	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	381
PstI	CTGCAG	1 cut(s)	184
PvuI	CGATCG	1 cut(s)	364
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
SaqAI	TTAA	3 cut(s)	159, 201, 317
Sau3AI	GATC	2 cut(s)	257, 361
Sau96I	GGNCC	1 cut(s)	381
ScaI	AGTACT	1 cut(s)	10
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	30
SetI	ASST	8 cut(s)	25, 43, 53, 64, 97, 201, 393, 469
SfcI	CTRYAG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	403
SmoI	CTYRAG	1 cut(s)	403
Sse9I	AATT	4 cut(s)	156, 186, 202, 408
SseBI	AGGCCT	1 cut(s)	438
StuI	AGGCCT	1 cut(s)	438
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	314
TasI	AATT	4 cut(s)	156, 186, 202, 408
TatI	WGTACW	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	3 cut(s)	159, 201, 317
Tru9I	TTAA	3 cut(s)	159, 201, 317
TseFI	GTSAC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	3 cut(s)	17, 51, 102
VspI	ATTAAT	1 cut(s)	159
XapI	RAATTY	2 cut(s)	186, 408
ZrmI	AGTACT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.