Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Forward (+)

59575179 .. 59576416

Gene Structure 1238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG439900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGACATCTGTTGTTTTCCCTATTCAACAGGTTTGGGCTTCAAAGTGGAATGAAAGAGCTTTTATTAGTCGTAAGAAAGCTAAACTAGACCATGAGAACATATGCATGGCTGTAATGATTCAAGAAATCATATGTGCCGAGTATGCCTTTGTTATTCACACAAAAAAAATCCCCTTATCAGGGAATACTGCAGAAATTTACAGAGAGATAGTTAAGGGCTTGGGAGAGACTTTGGTGGGTGCATATCCTGGACGAGCCATGAGCTTCATAACCCAGGAAGCCAATCTAAACTCTCCTATCGTTAATTGTTATCCAAGCAAGCCAATAGGGCTGTATACCAGGCAGTCTGTCATCTTCAGAACAGACTCAAATGCTGAGGTTCTGGAAGGATATGCAGGTGCTGGGCTTCATGACAGTGTAATTATGGATAAAGAGGAGAAGATTGTGTGGGATTACTCAAGTGATCGGATGATCTTTGATAGGGGCTTCCAAGTCTCACTCTTCTCAAGAATTGCAGACGTGGGGAAGATATTAGAAGGCCTTTATGGTTGTCCTCAGGACATTGAAGGTGTGGTAAAAGATGGATTGATATACGTAGTTCAGTCAAGGCCACAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

206

Amino Acids

23.12

Weight (kDa)

5.96

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPDK_N	PF01326	5 - 205	9.5e-19	Pyruvate phosphate dikinase, AMP/ATP-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	386
Acc36I	ACCTGC	1 cut(s)	386
AccI	GTMKAC	1 cut(s)	335
AcsI	RAATTY	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	340
AfiI	CCNNNNNNNGG	2 cut(s)	179, 180
AgsI	TTSAA	4 cut(s)	26, 42, 122, 566
AjiI	CACGTC	1 cut(s)	520
AjnI	CCWGG	3 cut(s)	247, 273, 338
AluBI	AGCT	3 cut(s)	59, 80, 264
AluI	AGCT	3 cut(s)	59, 80, 264
Alw26I	GTCTC	2 cut(s)	221, 499
AlwNI	CAGNNNCTG	1 cut(s)	401
AoxI	GGCC	2 cut(s)	538, 608
ApoI	RAATTY	1 cut(s)	195
AxyI	CCTNAGG	1 cut(s)	555
BbvCI	CCTCAGC	1 cut(s)	375
BccI	CCATC	1 cut(s)	575
BciT130I	CCWGG	3 cut(s)	249, 275, 340
BcoDI	GTCTC	2 cut(s)	221, 499
BfaI	CTAG	2 cut(s)	86, 619
BfmI	CTRYAG	1 cut(s)	189
BfuAI	ACCTGC	1 cut(s)	386
BglI	GCCNNNNNGGC	1 cut(s)	328
Bme1390I	CCNGG	3 cut(s)	249, 275, 340
BmgBI	CACGTC	1 cut(s)	520
BmrFI	CCNGG	3 cut(s)	249, 275, 340
Bpu10I	CCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	2 cut(s)	442, 490
BsaAI	YACGTR	1 cut(s)	595
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 180
Bse21I	CCTNAGG	1 cut(s)	555
BseBI	CCWGG	3 cut(s)	249, 275, 340
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	474
BseLI	CCNNNNNNNGG	2 cut(s)	179, 180
BseMII	CTCAG	2 cut(s)	366, 569
BseRI	GAGGAG	1 cut(s)	449
BseYI	CCCAGC	1 cut(s)	401
BshFI	GGCC	2 cut(s)	540, 610
BslI	CCNNNNNNNGG	2 cut(s)	179, 180
BsmAI	GTCTC	2 cut(s)	221, 499
BsnI	GGCC	2 cut(s)	540, 610
Bsp143I	GATC	2 cut(s)	463, 471
BspANI	GGCC	2 cut(s)	540, 610
BspCNI	CTCAG	2 cut(s)	367, 568
BspHI	TCATGA	1 cut(s)	409
BspMAI	CTGCAG	1 cut(s)	193
BspMI	ACCTGC	1 cut(s)	386
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	2 cut(s)	463, 471
BssNAI	GTATAC	1 cut(s)	336
Bst1107I	GTATAC	1 cut(s)	336
Bst2UI	CCWGG	3 cut(s)	249, 275, 340
Bst4CI	ACNGT	1 cut(s)	416
Bst6I	CTCTTC	1 cut(s)	506
BstBAI	YACGTR	1 cut(s)	595
BstC8I	GCNNGC	1 cut(s)	320
BstDEI	CTNAG	2 cut(s)	375, 555
BstF5I	GGATG	1 cut(s)	474
BstKTI	GATC	2 cut(s)	466, 474
BstMAI	GTCTC	2 cut(s)	221, 499
BstMBI	GATC	2 cut(s)	463, 471
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 328
BstNI	CCWGG	3 cut(s)	249, 275, 340
BstSCI	CCNGG	3 cut(s)	247, 273, 338
BstSFI	CTRYAG	1 cut(s)	189
BstSNI	TACGTA	1 cut(s)	595
BstZ17I	GTATAC	1 cut(s)	336
Bsu36I	CCTNAGG	1 cut(s)	555
BsuRI	GGCC	2 cut(s)	540, 610
BtrI	CACGTC	1 cut(s)	520
BtsCI	GGATG	1 cut(s)	474
BtsIMutI	CAGTG	1 cut(s)	421
BveI	ACCTGC	1 cut(s)	386
Cac8I	GCNNGC	1 cut(s)	320
CaiI	CAGNNNCTG	1 cut(s)	401
CciI	TCATGA	1 cut(s)	409
CviAII	CATG	4 cut(s)	92, 106, 259, 410
DdeI	CTNAG	2 cut(s)	375, 555
DpnI	GATC	2 cut(s)	465, 473
DpnII	GATC	2 cut(s)	463, 471
Eam1104I	CTCTTC	1 cut(s)	506
EarI	CTCTTC	1 cut(s)	506
Eco105I	TACGTA	1 cut(s)	595
Eco147I	AGGCCT	1 cut(s)	540
Eco57I	CTGAAG	1 cut(s)	340
Eco81I	CCTNAGG	1 cut(s)	555
EcoRII	CCWGG	3 cut(s)	247, 273, 338
EcoT22I	ATGCAT	1 cut(s)	107
FaeI	CATG	4 cut(s)	95, 109, 262, 413
FatI	CATG	4 cut(s)	91, 105, 258, 409
FauNDI	CATATG	2 cut(s)	101, 131
FblI	GTMKAC	1 cut(s)	335
FokI	GGATG	1 cut(s)	481
FspBI	CTAG	2 cut(s)	86, 619
GsaI	CCCAGC	1 cut(s)	405
HaeIII	GGCC	2 cut(s)	540, 610
Hin1II	CATG	4 cut(s)	95, 109, 262, 413
HinfI	GANTC	2 cut(s)	118, 365
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	2 cut(s)	359, 468
Hpy188III	TCNNGA	5 cut(s)	122, 383, 410, 507, 557
Hpy8I	GTNNAC	1 cut(s)	336
HpyAV	CCTTC	3 cut(s)	380, 530, 560
HpyCH4III	ACNGT	1 cut(s)	416
HpyCH4IV	ACGT	2 cut(s)	519, 594
HpyCH4V	TGCA	5 cut(s)	105, 191, 242, 395, 515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 328
HpyF3I	CTNAG	2 cut(s)	375, 555
HpySE526I	ACGT	2 cut(s)	519, 594
Hsp92II	CATG	4 cut(s)	95, 109, 262, 413
Kzo9I	GATC	2 cut(s)	463, 471
MaeI	CTAG	2 cut(s)	86, 619
MaeII	ACGT	2 cut(s)	519, 594
MalI	GATC	2 cut(s)	465, 473
MboI	GATC	2 cut(s)	463, 471
MboII	GAAGA	4 cut(s)	346, 451, 493, 538
MluCI	AATT	4 cut(s)	195, 304, 420, 510
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	3 cut(s)	370, 427, 564
Mph1103I	ATGCAT	1 cut(s)	107
MseI	TTAA	2 cut(s)	213, 303
MslI	CAYNNNNRTG	2 cut(s)	104, 414
MspR9I	CCNGG	3 cut(s)	249, 275, 340
MvaI	CCWGG	3 cut(s)	249, 275, 340
MwoI	GCNNNNNNNGC	2 cut(s)	143, 328
NdeI	CATATG	2 cut(s)	101, 131
NdeII	GATC	2 cut(s)	463, 471
NlaIII	CATG	4 cut(s)	95, 109, 262, 413
NmeAIII	GCCGAG	1 cut(s)	163
NsiI	ATGCAT	1 cut(s)	107
PagI	TCATGA	1 cut(s)	409
PaqCI	CACCTGC	1 cut(s)	386
PceI	AGGCCT	1 cut(s)	540
PfeI	GAWTC	1 cut(s)	118
PfoI	TCCNGGA	1 cut(s)	247
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
Ppu21I	YACGTR	1 cut(s)	595
Psp6I	CCWGG	3 cut(s)	247, 273, 338
PspFI	CCCAGC	1 cut(s)	401
PspGI	CCWGG	3 cut(s)	247, 273, 338
PstI	CTGCAG	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	401
RseI	CAYNNNNRTG	2 cut(s)	104, 414
SaqAI	TTAA	2 cut(s)	213, 303
Sau3AI	GATC	2 cut(s)	463, 471
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	3 cut(s)	249, 275, 340
SetI	ASST	9 cut(s)	33, 61, 82, 266, 381, 400, 522, 571, 597
SfcI	CTRYAG	1 cut(s)	189
SmiMI	CAYNNNNRTG	2 cut(s)	104, 414
SmlI	CTYRAG	2 cut(s)	457, 505
SmoI	CTYRAG	2 cut(s)	457, 505
SnaBI	TACGTA	1 cut(s)	595
Sse9I	AATT	4 cut(s)	195, 304, 420, 510
SseBI	AGGCCT	1 cut(s)	540
SspMI	CTAG	2 cut(s)	86, 619
StuI	AGGCCT	1 cut(s)	540
StyD4I	CCNGG	3 cut(s)	247, 273, 338
TaaI	ACNGT	1 cut(s)	416
TaiI	ACGT	2 cut(s)	522, 597
TasI	AATT	4 cut(s)	195, 304, 420, 510
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	2 cut(s)	213, 303
Tru9I	TTAA	2 cut(s)	213, 303
TscAI	CASTG	1 cut(s)	421
TspDTI	ATGAA	3 cut(s)	66, 256, 398
TspRI	CASTG	1 cut(s)	421
XapI	RAATTY	1 cut(s)	195
XmiI	GTMKAC	1 cut(s)	335
XspI	CTAG	2 cut(s)	86, 619
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.