Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Forward (+)

11511119 .. 11513127

Gene Structure 2009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTTGGGGGTTCCAGAAGTGCCTTTCCATGAGAGATACTTGGGGTTACCAACCGTTGCAGGTCGTAACAACAAGGAGATGTTCAAAATAATCCATGAAAGATTGGATAGTCATCTACAGGGTTGGCAAAATAAATTACTTTCAAAGGCAGGTAAATCTGTCCTTATCAGGGCCGTGGCTCAAGTAATCCCTTCTTTCACTATGACAGTTTTCATGTTACCAAAAGGTGTGTGTAGAACTTATCAAGTTAAGGTGGCTAAGTATTGGTGGGGGAAGAGTGGTGCTAAGAGAGGTATACATTGGGCAAAGTGGGAGCTTCTTTGTCAACACAAACATGAGGGTGGTCTGGGGTTTAGAGATATCAGTTGTTTTAATCAGGCTTTGTTGGCAAAAAGGGTGTGGAGGTTGATTTTGGATGCTAACTCTTTAGTAAGCAGGATTCTGCACATCAAATACTTCTGGGGGCAGAGTTGGGCTGATGTGAAGTTGGGGCCTAAACCTTCTTATATTTGGCGAAGTTTGCTTTGGAGAAGAGATCTGATCTGTGAGGGAGTAAGATGGCGTATTGGAAATGGTGAGATGGTGAAAATTAGGGGTGATCGGTGGGTTCCTTTGCCATGGAATTTTAAAGTAATTACCCCTCGTTTCCTACATGAAGATACTCTTGTCAGACAGCTTATGACTCAGCCAGGTGAGTGGGATACAAACTTTATTAATTCACATTTCCTTCCCGTTGACGCTGAGAGGATACTCTCTATTCCTTTAGTTGAAAGTGGTGGAAGTGATGTGGTTGTTTGGCACTATTGCACTAATGGGCAGTATACAGTCAAGTCGGGTTATTGGTTAGGTATGGAGATGAAAAGGAAGGAGTTGGGATCAGGCAGTGTGTGTGGGAATGGTGCATCTAACTCCAGGACAATTTGGAGTCTTTGCATTCCAAACAAATTCAAGCTTTTGCTATGGCGGGCTTGCCACGCATTCCTACCCTGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

331

Amino Acids

38.17

Weight (kDa)

9.86

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	50, 140
AccI	GTMKAC	2 cut(s)	295, 821
AciI	CCGC	1 cut(s)	964
AclWI	GGATC	1 cut(s)	883
AcsI	RAATTY	2 cut(s)	622, 944
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	4 cut(s)	85, 144, 770, 949
AjnI	CCWGG	2 cut(s)	688, 911
AjuI	GAANNNNNNNTTGG	2 cut(s)	508, 540
AluBI	AGCT	3 cut(s)	316, 676, 952
AluI	AGCT	3 cut(s)	316, 676, 952
AlwI	GGATC	1 cut(s)	883
AoxI	GGCC	2 cut(s)	171, 491
ApoI	RAATTY	2 cut(s)	622, 944
AseI	ATTAAT	1 cut(s)	714
AspS9I	GGNCC	2 cut(s)	171, 491
AsuHPI	GGTGA	4 cut(s)	587, 595, 608, 704
BaeI	ACNNNNGTAYC	2 cut(s)	651, 684
BccI	CCATC	2 cut(s)	552, 574
BceAI	ACGGC	1 cut(s)	158
BciT130I	CCWGG	2 cut(s)	690, 913
BciVI	GTATCC	2 cut(s)	694, 741
BfmI	CTRYAG	1 cut(s)	116
BfuAI	ACCTGC	2 cut(s)	50, 140
BfuI	GTATCC	2 cut(s)	694, 741
BglII	AGATCT	1 cut(s)	535
Bme1390I	CCNGG	2 cut(s)	690, 913
BmgT120I	GGNCC	2 cut(s)	171, 491
BmiI	GGNNCC	3 cut(s)	12, 492, 609
BmrFI	CCNGG	2 cut(s)	690, 913
BmsI	GCATC	2 cut(s)	406, 911
BpmI	CTGGAG	1 cut(s)	895
BpuEI	CTTGAG	1 cut(s)	165
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	174, 617
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	690, 913
BseDI	CCNNGG	2 cut(s)	174, 617
BseGI	GGATG	1 cut(s)	421
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	2 cut(s)	698, 732
BsgI	GTGCAG	1 cut(s)	428
BshFI	GGCC	2 cut(s)	173, 493
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmI	GAATGC	2 cut(s)	933, 977
BsnI	GGCC	2 cut(s)	173, 493
Bsp143I	GATC	4 cut(s)	535, 540, 598, 875
Bsp19I	CCATGG	1 cut(s)	617
BspACI	CCGC	1 cut(s)	964
BspANI	GGCC	2 cut(s)	173, 493
BspCNI	CTCAG	2 cut(s)	697, 733
BspLI	GGNNCC	3 cut(s)	12, 492, 609
BspMI	ACCTGC	2 cut(s)	50, 140
BspPI	GGATC	1 cut(s)	883
BssECI	CCNNGG	2 cut(s)	174, 617
BssMI	GATC	4 cut(s)	535, 540, 598, 875
BssNAI	GTATAC	2 cut(s)	296, 822
BssT1I	CCWWGG	1 cut(s)	617
Bst1107I	GTATAC	2 cut(s)	296, 822
Bst2UI	CCWGG	2 cut(s)	690, 913
Bst4CI	ACNGT	3 cut(s)	55, 208, 826
Bst6I	CTCTTC	2 cut(s)	269, 526
BstC8I	GCNNGC	2 cut(s)	966, 970
BstDEI	CTNAG	4 cut(s)	258, 285, 684, 741
BstDSI	CCRYGG	2 cut(s)	174, 617
BstEII	GGTNACC	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	421
BstKTI	GATC	4 cut(s)	538, 543, 601, 878
BstMBI	GATC	4 cut(s)	535, 540, 598, 875
BstMWI	GCNNNNNNNGC	3 cut(s)	386, 520, 974
BstNI	CCWGG	2 cut(s)	690, 913
BstPI	GGTNACC	1 cut(s)	45
BstSCI	CCNGG	2 cut(s)	688, 911
BstSFI	CTRYAG	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	535
BstXI	CCANNNNNNTGG	1 cut(s)	696
BstYI	RGATCY	1 cut(s)	535
BstZ17I	GTATAC	2 cut(s)	296, 822
BsuI	GTATCC	2 cut(s)	694, 741
BsuRI	GGCC	2 cut(s)	173, 493
BtgI	CCRYGG	2 cut(s)	174, 617
BtsCI	GGATG	1 cut(s)	421
BtsI	GCAGTG	1 cut(s)	889
BtsIMutI	CAGTG	1 cut(s)	889
BveI	ACCTGC	2 cut(s)	50, 140
Cac8I	GCNNGC	2 cut(s)	966, 970
Cfr13I	GGNCC	2 cut(s)	171, 491
CseI	GACGC	1 cut(s)	746
CviAII	CATG	7 cut(s)	29, 95, 214, 335, 618, 653, 993
DdeI	CTNAG	4 cut(s)	258, 285, 684, 741
DpnI	GATC	4 cut(s)	537, 542, 600, 877
DpnII	GATC	4 cut(s)	535, 540, 598, 875
DraI	TTTAAA	1 cut(s)	628
Eam1104I	CTCTTC	2 cut(s)	269, 526
EarI	CTCTTC	2 cut(s)	269, 526
Eco130I	CCWWGG	1 cut(s)	617
Eco32I	GATATC	1 cut(s)	361
Eco91I	GGTNACC	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	491
EcoO65I	GGTNACC	1 cut(s)	45
EcoRII	CCWGG	2 cut(s)	688, 911
EcoRV	GATATC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	617
ErhI	CCWWGG	1 cut(s)	617
FaeI	CATG	7 cut(s)	32, 98, 217, 338, 621, 656, 996
FalI	AAGNNNNNCTT	2 cut(s)	648, 680
FatI	CATG	7 cut(s)	28, 94, 213, 334, 617, 652, 992
FauI	CCCGC	1 cut(s)	957
FblI	GTMKAC	2 cut(s)	295, 821
FokI	GGATG	1 cut(s)	428
GsuI	CTGGAG	1 cut(s)	895
HaeIII	GGCC	2 cut(s)	173, 493
HgaI	GACGC	1 cut(s)	746
Hin1II	CATG	7 cut(s)	32, 98, 217, 338, 621, 656, 996
HincII	GTYRAC	2 cut(s)	326, 736
HindII	GTYRAC	2 cut(s)	326, 736
HindIII	AAGCTT	1 cut(s)	950
HinfI	GANTC	3 cut(s)	439, 682, 925
HphI	GGTGA	4 cut(s)	587, 595, 608, 704
Hpy166II	GTNNAC	4 cut(s)	296, 326, 736, 822
Hpy188I	TCNGA	2 cut(s)	540, 671
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	4 cut(s)	296, 326, 736, 822
HpyAV	CCTTC	4 cut(s)	201, 510, 737, 859
HpyCH4III	ACNGT	3 cut(s)	55, 208, 826
HpyCH4V	TGCA	6 cut(s)	59, 445, 807, 902, 933, 992
HpyF10VI	GCNNNNNNNGC	3 cut(s)	386, 520, 974
HpyF3I	CTNAG	4 cut(s)	258, 285, 684, 741
Hsp92II	CATG	7 cut(s)	32, 98, 217, 338, 621, 656, 996
Kzo9I	GATC	4 cut(s)	535, 540, 598, 875
LmnI	GCTCC	1 cut(s)	313
LweI	GCATC	2 cut(s)	406, 911
MaeIII	GTNAC	3 cut(s)	45, 65, 216
MalI	GATC	4 cut(s)	537, 542, 600, 877
MboI	GATC	4 cut(s)	535, 540, 598, 875
MboII	GAAGA	3 cut(s)	286, 543, 668
MflI	RGATCY	1 cut(s)	535
MluCI	AATT	7 cut(s)	134, 588, 622, 633, 715, 918, 944
MlyI	GAGTC	2 cut(s)	676, 934
MnlI	CCTC	6 cut(s)	284, 331, 396, 541, 651, 738
MseI	TTAA	4 cut(s)	249, 372, 627, 714
MslI	CAYNNNNRTG	2 cut(s)	333, 339
MspR9I	CCNGG	2 cut(s)	690, 913
Mva1269I	GAATGC	2 cut(s)	933, 977
MvaI	CCWGG	2 cut(s)	690, 913
MwoI	GCNNNNNNNGC	3 cut(s)	386, 520, 974
NcoI	CCATGG	1 cut(s)	617
NdeII	GATC	4 cut(s)	535, 540, 598, 875
NlaIII	CATG	7 cut(s)	32, 98, 217, 338, 621, 656, 996
NlaIV	GGNNCC	3 cut(s)	12, 492, 609
PctI	GAATGC	2 cut(s)	933, 977
PfeI	GAWTC	1 cut(s)	439
PfoI	TCCNGGA	1 cut(s)	911
PleI	GAGTC	2 cut(s)	676, 933
PpsI	GAGTC	2 cut(s)	676, 933
PshBI	ATTAAT	1 cut(s)	714
Psp6I	CCWGG	2 cut(s)	688, 911
PspEI	GGTNACC	1 cut(s)	45
PspGI	CCWGG	2 cut(s)	688, 911
PspN4I	GGNNCC	3 cut(s)	12, 492, 609
PspPI	GGNCC	2 cut(s)	171, 491
PsuI	RGATCY	1 cut(s)	535
RseI	CAYNNNNRTG	2 cut(s)	333, 339
SaqAI	TTAA	4 cut(s)	249, 372, 627, 714
Sau3AI	GATC	4 cut(s)	535, 540, 598, 875
Sau96I	GGNCC	2 cut(s)	171, 491
SchI	GAGTC	2 cut(s)	676, 934
ScrFI	CCNGG	2 cut(s)	690, 913
SfaNI	GCATC	2 cut(s)	406, 911
SfcI	CTRYAG	1 cut(s)	116
SmiMI	CAYNNNNRTG	2 cut(s)	333, 339
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	7 cut(s)	134, 588, 622, 633, 715, 918, 944
SsiI	CCGC	1 cut(s)	964
StyD4I	CCNGG	2 cut(s)	688, 911
StyI	CCWWGG	1 cut(s)	617
TaaI	ACNGT	3 cut(s)	55, 208, 826
TasI	AATT	7 cut(s)	134, 588, 622, 633, 715, 918, 944
TfiI	GAWTC	1 cut(s)	439
Tru1I	TTAA	4 cut(s)	249, 372, 627, 714
Tru9I	TTAA	4 cut(s)	249, 372, 627, 714
TscAI	CASTG	1 cut(s)	889
TspDTI	ATGAA	4 cut(s)	111, 202, 669, 872
TspRI	CASTG	1 cut(s)	889
VspI	ATTAAT	1 cut(s)	714
XapI	RAATTY	2 cut(s)	622, 944
XmiI	GTMKAC	2 cut(s)	295, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.