AT1G15420

Dip2/Utp12 Family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000668
Physical Location & Seq
Reverse (-)
5301516 .. 5303522
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15420.2

Sequence Viewer

Length: 837 bp
ATGGCCAAGGACAAACTCAAGCCTCTTCTCTCCTCTGATGCTGCAGGTGATATCGCTGATACTCCTCTCCGAGAGAAGAAGCATAAGAAGAAGAGCAAGAAGCGAGCTGAACCTGAACCTGATATACCCTCTACACGAGATTCCGGTCTTGATGAAGATAGAGATGGAGTATTGGTAGATGATACTCTAAATGAGCCAACGATAGGTGATAAACTTGAGAGTCTTGACTTATTAAATGGCGAAAAGGTTAACAGTGAGGAGAGTAATAGAGATTCTGCTCCTGGCGATGATAAGCCTCCTACTGCTGCTTCTGTTAACGTTCTTCTGAGACAAGCATTGCATGCCGATGATCGTTCTCTTCTACTCGACTGCTTGTACAACCGAGATGAGCAGGTGATTGCTAATTCGGTTGCTAAGTTGAATTCAGCCGAAGTACTCAAGCTTCTAAATGCCCTTCTACCAATACTACAATCAAGGGGTGCTATTTTGGCTTGTACAATTCCATGGATAAAGAGTCTGTTACTTACTCATTCTAGTGGAATTATGTCCCAAGAGTCATCATTACTCGCTTTAAACACCATGTATCAGCTCATCGAATCACGGGTTTCAACTATTCATACTGCCGTAGAGGTTTCAAGTGGCTTGGACTTGATTGTGGACGACTTGGATGAAGAAGAAGATGAAGGTCCCGTGATCTATGAGGACAAGGACAGTGATGAAGACGAAGAAGAAGGAATAGAGGAAGCAATGGAGACAGATGAAGAGGCAGACGACTCAGCAGATGAAGCTGCTGATGGTGTGAATGATTTTGAAGGATTTGACGACATGAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Utp12

Protein Analysis

278

Amino Acids

30.33

Weight (kDa)

4.16

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Utp12 PF04003 117 - 196 3.7e-12 Dip2/Utp12 Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 35, 382
Acc36I ACCTGC 2 cut(s) 35, 382
AclI AACGTT 1 cut(s) 318
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 421
AfaI GTAC 3 cut(s) 377, 435, 496
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 4 cut(s) 421, 609, 636, 812
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 4 cut(s) 107, 442, 589, 788
AluI AGCT 4 cut(s) 107, 442, 589, 788
Alw26I GTCTC 2 cut(s) 322, 746
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 41, 305, 788
ApoI RAATTY 1 cut(s) 421
AspS9I GGNCC 1 cut(s) 686
AsuHPI GGTGA 3 cut(s) 59, 218, 406
AvaII GGWCC 1 cut(s) 686
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 426, 458
BauI CACGAG 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 726
BbvI GCAGC 3 cut(s) 28, 292, 775
BccI CCATC 2 cut(s) 158, 788
BceAI ACGGC 1 cut(s) 608
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 2 cut(s) 322, 746
BfaI CTAG 1 cut(s) 534
BfmI CTRYAG 1 cut(s) 42
BfuAI ACCTGC 2 cut(s) 35, 382
BisI GCNGC 3 cut(s) 42, 306, 789
BlsI GCNGC 3 cut(s) 43, 307, 790
BmcAI AGTACT 1 cut(s) 435
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 1 cut(s) 686
BmgT120I GGNCC 1 cut(s) 686
BmiI GGNNCC 1 cut(s) 688
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 28
BpiI GAAGAC 1 cut(s) 726
BpuEI CTTGAG 2 cut(s) 236, 422
BsaJI CCNNGG 2 cut(s) 6, 503
BsaWI WCCGGW 1 cut(s) 143
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse3DI GCAATG 2 cut(s) 335, 753
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 6, 503
BseGI GGATG 1 cut(s) 673
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMI GCAATG 2 cut(s) 335, 753
BseMII CTCAG 2 cut(s) 317, 789
BseRI GAGGAG 3 cut(s) 22, 54, 272
BseXI GCAGC 3 cut(s) 28, 292, 775
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 144
BslFI GGGAC 2 cut(s) 532, 672
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 2 cut(s) 322, 746
BsmFI GGGAC 2 cut(s) 532, 672
BsnI GGCC 1 cut(s) 5
Bsp1407I TGTACA 2 cut(s) 375, 494
Bsp143I GATC 2 cut(s) 349, 693
Bsp19I CCATGG 1 cut(s) 503
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 318, 788
BspLI GGNNCC 1 cut(s) 688
BspMAI CTGCAG 1 cut(s) 46
BspMI ACCTGC 2 cut(s) 35, 382
BspQI GCTCTTC 1 cut(s) 86
BsrDI GCAATG 2 cut(s) 335, 753
BsrGI TGTACA 2 cut(s) 375, 494
BssECI CCNNGG 2 cut(s) 6, 503
BssMI GATC 2 cut(s) 349, 693
BssSI CACGAG 1 cut(s) 135
BssT1I CCWWGG 2 cut(s) 6, 503
Bst2BI CACGAG 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 254, 713
Bst6I CTCTTC 4 cut(s) 30, 86, 363, 756
BstAPI GCANNNNNTGC 1 cut(s) 341
BstAUI TGTACA 2 cut(s) 375, 494
BstC8I GCNNGC 2 cut(s) 105, 342
BstDEI CTNAG 3 cut(s) 326, 414, 775
BstDSI CCRYGG 1 cut(s) 503
BstF5I GGATG 1 cut(s) 673
BstKTI GATC 2 cut(s) 352, 696
BstMAI GTCTC 2 cut(s) 322, 746
BstMBI GATC 2 cut(s) 349, 693
BstMWI GCNNNNNNNGC 3 cut(s) 341, 488, 785
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 280
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 3 cut(s) 28, 292, 775
BstV2I GAAGAC 1 cut(s) 726
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 503
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 1 cut(s) 673
BtsIMutI CAGTG 2 cut(s) 259, 718
BveI ACCTGC 2 cut(s) 35, 382
Cac8I GCNNGC 2 cut(s) 105, 342
Cfr13I GGNCC 1 cut(s) 686
Csp6I GTAC 3 cut(s) 376, 434, 495
CviAII CATG 4 cut(s) 341, 504, 580, 826
CviQI GTAC 3 cut(s) 376, 434, 495
DdeI CTNAG 3 cut(s) 326, 414, 775
DpnI GATC 2 cut(s) 351, 695
DpnII GATC 2 cut(s) 349, 693
DraI TTTAAA 1 cut(s) 573
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 30, 86, 363, 756
EarI CTCTTC 4 cut(s) 30, 86, 363, 756
Eco130I CCWWGG 2 cut(s) 6, 503
Eco32I GATATC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 686
EcoO109I RGGNCCY 1 cut(s) 686
EcoRI GAATTC 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 280
EcoRV GATATC 1 cut(s) 52
EcoT14I CCWWGG 2 cut(s) 6, 503
ErhI CCWWGG 2 cut(s) 6, 503
FaeI CATG 4 cut(s) 344, 507, 583, 829
FaiI YATR 9 cut(s) 84, 125, 342, 505, 545, 581, 618, 699, 827
FaqI GGGAC 2 cut(s) 532, 672
FatI CATG 4 cut(s) 340, 503, 579, 825
Fnu4HI GCNGC 3 cut(s) 42, 306, 789
FokI GGATG 1 cut(s) 680
Fsp4HI GCNGC 3 cut(s) 42, 306, 789
FspBI CTAG 1 cut(s) 534
GluI GCNGC 3 cut(s) 42, 306, 789
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 144
Hin1II CATG 4 cut(s) 344, 507, 583, 829
HincII GTYRAC 2 cut(s) 250, 316
HindII GTYRAC 2 cut(s) 250, 316
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 7 cut(s) 140, 220, 272, 514, 554, 596, 773
HpaI GTTAAC 2 cut(s) 250, 316
HpaII CCGG 1 cut(s) 144
HphI GGTGA 3 cut(s) 59, 218, 406
Hpy166II GTNNAC 3 cut(s) 250, 316, 658
Hpy188I TCNGA 3 cut(s) 37, 71, 327
Hpy188III TCNNGA 2 cut(s) 149, 224
Hpy8I GTNNAC 3 cut(s) 250, 316, 658
HpyAV CCTTC 4 cut(s) 464, 677, 725, 806
HpyCH4III ACNGT 2 cut(s) 254, 713
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 2 cut(s) 44, 340
HpyF10VI GCNNNNNNNGC 3 cut(s) 341, 488, 785
HpyF3I CTNAG 3 cut(s) 326, 414, 775
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 4 cut(s) 344, 507, 583, 829
KspAI GTTAAC 2 cut(s) 250, 316
Kzo9I GATC 2 cut(s) 349, 693
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 7 cut(s) 30, 126, 132, 157, 267, 294, 377
Lsp1109I GCAGC 3 cut(s) 28, 292, 775
LweI GCATC 1 cut(s) 28
MaeI CTAG 1 cut(s) 534
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 1 cut(s) 519
MalI GATC 2 cut(s) 351, 695
MboI GATC 2 cut(s) 349, 693
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 403, 421, 498, 540
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 229, 523, 563, 767
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 233, 249, 315, 572
MslI CAYNNNNRTG 2 cut(s) 345, 534
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 3 cut(s) 341, 488, 785
NcoI CCATGG 1 cut(s) 503
NdeII GATC 2 cut(s) 349, 693
NlaIII CATG 4 cut(s) 344, 507, 583, 829
NlaIV GGNNCC 1 cut(s) 688
NspI RCATGY 1 cut(s) 344
PaeI GCATGC 1 cut(s) 344
PaqCI CACCTGC 2 cut(s) 35, 382
PciSI GCTCTTC 1 cut(s) 86
PfeI GAWTC 3 cut(s) 140, 272, 596
PkrI GCNGC 3 cut(s) 43, 307, 790
PleI GAGTC 4 cut(s) 228, 522, 562, 767
PpsI GAGTC 4 cut(s) 228, 522, 562, 767
PpuMI RGGWCCY 1 cut(s) 686
Psp1406I AACGTT 1 cut(s) 318
Psp5II RGGWCCY 1 cut(s) 686
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 688
PspPI GGNCC 1 cut(s) 686
PspPPI RGGWCCY 1 cut(s) 686
PsrI GAACNNNNNNTAC 2 cut(s) 108, 140
PstI CTGCAG 1 cut(s) 46
RsaI GTAC 3 cut(s) 377, 435, 496
RsaNI GTAC 3 cut(s) 376, 434, 495
RseI CAYNNNNRTG 2 cut(s) 345, 534
SapI GCTCTTC 1 cut(s) 86
SaqAI TTAA 4 cut(s) 233, 249, 315, 572
SatI GCNGC 3 cut(s) 42, 306, 789
Sau3AI GATC 2 cut(s) 349, 693
Sau96I GGNCC 1 cut(s) 686
ScaI AGTACT 1 cut(s) 435
SchI GAGTC 4 cut(s) 229, 523, 563, 767
ScrFI CCNGG 1 cut(s) 282
SfaNI GCATC 1 cut(s) 28
SfcI CTRYAG 1 cut(s) 42
SinI GGWCC 1 cut(s) 686
SmiMI CAYNNNNRTG 2 cut(s) 345, 534
SmlI CTYRAG 3 cut(s) 17, 215, 437
SmoI CTYRAG 3 cut(s) 17, 215, 437
SphI GCATGC 1 cut(s) 344
Sse9I AATT 4 cut(s) 403, 421, 498, 540
SspMI CTAG 1 cut(s) 534
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 2 cut(s) 6, 503
TaaI ACNGT 2 cut(s) 254, 713
TaiI ACGT 1 cut(s) 321
TaqI TCGA 2 cut(s) 366, 594
TasI AATT 4 cut(s) 403, 421, 498, 540
TatI WGTACW 3 cut(s) 375, 433, 494
TfiI GAWTC 3 cut(s) 140, 272, 596
Tru1I TTAA 4 cut(s) 233, 249, 315, 572
Tru9I TTAA 4 cut(s) 233, 249, 315, 572
TscAI CASTG 2 cut(s) 259, 718
TseI GCWGC 3 cut(s) 41, 305, 788
TspDTI ATGAA 7 cut(s) 168, 605, 684, 696, 732, 774, 798
TspRI CASTG 2 cut(s) 259, 718
VpaK11BI GGWCC 1 cut(s) 686
XapI RAATTY 1 cut(s) 421
XceI RCATGY 1 cut(s) 344
XspI CTAG 1 cut(s) 534
ZrmI AGTACT 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.