Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005044.1

Orthogroup ID

OG0000668

Physical Location & Seq

Genomic Coordinates Reverse (-)

60763 .. 61347

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005044.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgttgtattggacatataggggccagagccagaccgggcttattgggttggatccttttgtgatcggccatggcagtgctagtggtggtaaccctaatggtgatgagactgttgacgatgttcattatcaatttcatctctttgatgcagttgatattgatttagacatgccatggatatgtatgtgtcgagggcgtctgcaaatgtgggcccactatggctggaatgctgattttgcggtttgggagttgacatttgatgatgatcttggatcagctgacgagttctatttgaaaaatgtgagtgtttatccaaactttaccacctgtgaagtttatacaaataatgtttttcttctatctttggacccggatgatgaggatatcttttatgtaaaagggtatgatggctgtttccggaacaaatactatttcatgtacaacatttgtacaagaaagtggtcaaaagtagctagcaccaagcatgttgaagatgatcatctctttcgattggtgctcccatggtggccaacaccacttcgtagactacctgtggttgaagaattacccatgccatatagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

194

Amino Acids

22.72

Weight (kDa)

4.57

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15420 AT1G15420
fragaria_vesca	FvH4_3g30171 FvH4_3g44471 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44510 FvH4_7g12841
malus_domestica	MD12G1094900.v1.1 MD14G1090800.v1.1 MD15G1387900.v1.1 MD15G1388000.v1.1
prunus_persica	Prupe.6G012700_v2.0.a1
pyrus_communis	pycom15g34820
rosa_chinensis	RchiOBHm_Chr1g0331681 RchiOBHm_Chr5g0081171 RchiOBHm_Chr5g0081181 RchiOBHm_Chr5g0081211
rosa_laevigata	RLG00000030438 RLG00000030441 RLG00000030443 RLG00000030447 RLG00000036915 RLG00000036917 RLG00000036919
rosa_multiflora	Rmu_sc0005044.1_g000010 Rmu_sc0005044.1_g000012 Rmu_sc0007768.1_g000001 Rmu_sc0020106.1_g000001 Rmu_ssc0000432.1_g000071 Rmu_ssc0000432.1_g000072 Rmu_ssc0000432.1_g000074 Rmu_ssc0000432.1_g000076 Rmu_ssc0000432.1_g000077
rosa_roxburghii	Rroxscaffold_1G00002290 Rroxscaffold_4G00323980
rosa_rugosa	Rorug01G0031400 Rorug01G0031500 Rorug05G0473700 Rorug05G0473800 Rorug05G0473900 Rorug05G0474000 Rorug05G0474100 Rorug05G0474200 Rorug05G0474400 Rorug05G0474700
rosa_samantha	Rh1AG119200 Rh1BG040400 Rh1CG045400 Rh1CG114200 Rh1CG114300 Rh1CG221300 Rh1DG050000 Rh1DG124400 Rh1DG124600 Rh5AG526300 Rh5AG526500 Rh5BG550600 Rh5CG573500 Rh5DG560300 Rh5DG560700
rosa_wichuraiana	Rw1G009620 Rw1G009630 Rw5G048900 Rw5G048910 Rw5G048940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	544
AccIII	TCCGGA	1 cut(s)	417
AciI	CCGC	1 cut(s)	239
AclWI	GGATC	3 cut(s)	47, 60, 280
AcoI	YGGCCR	2 cut(s)	67, 527
AcyI	GRCGYC	1 cut(s)	196
AfaI	GTAC	2 cut(s)	440, 451
AgsI	TTSAA	3 cut(s)	295, 491, 560
AluBI	AGCT	3 cut(s)	278, 473, 582
AluI	AGCT	3 cut(s)	278, 473, 582
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	3 cut(s)	47, 60, 280
Aor13HI	TCCGGA	1 cut(s)	417
AoxI	GGCC	4 cut(s)	22, 67, 210, 527
ApaI	GGGCCC	1 cut(s)	214
AspS9I	GGNCC	4 cut(s)	22, 210, 211, 367
AsuC2I	CCSGG	2 cut(s)	37, 371
AsuHPI	GGTGA	1 cut(s)	113
AsuNHI	GCTAGC	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	367
BaeGI	GKGCMC	1 cut(s)	214
BalI	TGGCCA	1 cut(s)	529
BamHI	GGATCC	1 cut(s)	52
BanII	GRGCYC	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	519
BccI	CCATC	1 cut(s)	401
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	2 cut(s)	37, 371
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	3 cut(s)	81, 474, 583
Bme1390I	CCNGG	2 cut(s)	37, 371
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	4 cut(s)	22, 210, 211, 367
BmiI	GGNNCC	4 cut(s)	23, 54, 212, 369
BmrFI	CCNGG	2 cut(s)	37, 371
BmsI	GCATC	1 cut(s)	136
BmtI	GCTAGC	1 cut(s)	477
BpuMI	CCSGG	2 cut(s)	37, 371
BsaBI	GATNNNNATC	2 cut(s)	264, 498
BsaHI	GRCGYC	1 cut(s)	196
BsaJI	CCNNGG	3 cut(s)	70, 173, 521
BsaWI	WCCGGW	1 cut(s)	417
Bse8I	GATNNNNATC	2 cut(s)	264, 498
BseAI	TCCGGA	1 cut(s)	417
BseDI	CCNNGG	3 cut(s)	70, 173, 521
BseGI	GGATG	1 cut(s)	379
BseJI	GATNNNNATC	2 cut(s)	264, 498
BseSI	GKGCMC	1 cut(s)	214
BshFI	GGCC	4 cut(s)	24, 69, 212, 529
BsiHKAI	GWGCWC	1 cut(s)	519
BsiSI	CCGG	3 cut(s)	36, 371, 418
BsmAI	GTCTC	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	4 cut(s)	24, 69, 212, 529
Bsp120I	GGGCCC	1 cut(s)	210
Bsp1286I	GDGCHC	2 cut(s)	214, 519
Bsp13I	TCCGGA	1 cut(s)	417
Bsp1407I	TGTACA	2 cut(s)	438, 449
Bsp143I	GATC	5 cut(s)	52, 63, 265, 272, 496
Bsp19I	CCATGG	3 cut(s)	70, 173, 521
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	4 cut(s)	24, 69, 212, 529
BspEI	TCCGGA	1 cut(s)	417
BspLI	GGNNCC	4 cut(s)	23, 54, 212, 369
BspOI	GCTAGC	1 cut(s)	477
BspPI	GGATC	3 cut(s)	47, 60, 280
BsrGI	TGTACA	2 cut(s)	438, 449
BssECI	CCNNGG	3 cut(s)	70, 173, 521
BssMI	GATC	5 cut(s)	52, 63, 265, 272, 496
BssNI	GRCGYC	1 cut(s)	196
BssT1I	CCWWGG	3 cut(s)	70, 173, 521
Bst4CI	ACNGT	1 cut(s)	112
BstACI	GRCGYC	1 cut(s)	196
BstAUI	TGTACA	2 cut(s)	438, 449
BstC8I	GCNNGC	1 cut(s)	475
BstDSI	CCRYGG	3 cut(s)	70, 173, 521
BstEII	GGTNACC	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	379
BstKTI	GATC	5 cut(s)	55, 66, 268, 275, 499
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	5 cut(s)	52, 63, 265, 272, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNSI	RCATGY	2 cut(s)	172, 488
BstPI	GGTNACC	1 cut(s)	89
BstSCI	CCNGG	2 cut(s)	35, 369
BstSLI	GKGCMC	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	4 cut(s)	24, 69, 212, 529
BtgI	CCRYGG	3 cut(s)	70, 173, 521
BtsCI	GGATG	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	475
Cfr13I	GGNCC	4 cut(s)	22, 210, 211, 367
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	439, 450
CviAII	CATG	7 cut(s)	71, 169, 174, 436, 485, 522, 571
CviQI	GTAC	2 cut(s)	439, 450
DpnI	GATC	5 cut(s)	54, 65, 267, 274, 498
DpnII	GATC	5 cut(s)	52, 63, 265, 272, 496
EaeI	YGGCCR	2 cut(s)	67, 527
Eco130I	CCWWGG	3 cut(s)	70, 173, 521
Eco24I	GRGCYC	1 cut(s)	214
Eco32I	GATATC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	367
Eco91I	GGTNACC	1 cut(s)	89
EcoO65I	GGTNACC	1 cut(s)	89
EcoRV	GATATC	1 cut(s)	385
EcoT14I	CCWWGG	3 cut(s)	70, 173, 521
EcoT38I	GRGCYC	1 cut(s)	214
ErhI	CCWWGG	3 cut(s)	70, 173, 521
FaeI	CATG	7 cut(s)	74, 172, 177, 439, 488, 525, 574
FatI	CATG	7 cut(s)	70, 168, 173, 435, 484, 521, 570
FbaI	TGATCA	1 cut(s)	496
FblI	GTMKAC	1 cut(s)	544
FokI	GGATG	1 cut(s)	386
FriOI	GRGCYC	1 cut(s)	214
FspBI	CTAG	3 cut(s)	81, 474, 583
HaeIII	GGCC	4 cut(s)	24, 69, 212, 529
HapII	CCGG	3 cut(s)	36, 371, 418
HgaI	GACGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	196
Hin1II	CATG	7 cut(s)	74, 172, 177, 439, 488, 525, 574
HincII	GTYRAC	2 cut(s)	115, 252
HindII	GTYRAC	2 cut(s)	115, 252
HpaII	CCGG	3 cut(s)	36, 371, 418
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	3 cut(s)	115, 252, 545
Hpy188III	TCNNGA	1 cut(s)	418
Hpy8I	GTNNAC	3 cut(s)	115, 252, 545
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	149, 202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
Hsp92I	GRCGYC	1 cut(s)	196
Hsp92II	CATG	7 cut(s)	74, 172, 177, 439, 488, 525, 574
Kpn2I	TCCGGA	1 cut(s)	417
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	5 cut(s)	52, 63, 265, 272, 496
LmnI	GCTCC	1 cut(s)	522
LpnPI	CCDG	8 cut(s)	38, 44, 49, 208, 340, 384, 431, 564
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	3 cut(s)	81, 474, 583
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	5 cut(s)	54, 65, 267, 274, 498
MboI	GATC	5 cut(s)	52, 63, 265, 272, 496
MboII	GAAGA	3 cut(s)	347, 503, 572
MflI	RGATCY	1 cut(s)	52
MhlI	GDGCHC	2 cut(s)	214, 519
MlsI	TGGCCA	1 cut(s)	529
MluCI	AATT	2 cut(s)	131, 563
MluNI	TGGCCA	1 cut(s)	529
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	2 cut(s)	185, 373
Mox20I	TGGCCA	1 cut(s)	529
MroI	TCCGGA	1 cut(s)	417
MscI	TGGCCA	1 cut(s)	529
MslI	CAYNNNNRTG	2 cut(s)	75, 178
Msp20I	TGGCCA	1 cut(s)	529
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	3 cut(s)	36, 371, 418
MspR9I	CCNGG	2 cut(s)	37, 371
Mva1269I	GAATGC	1 cut(s)	232
MwoI	GCNNNNNNNGC	1 cut(s)	236
NciI	CCSGG	2 cut(s)	37, 371
NcoI	CCATGG	3 cut(s)	70, 173, 521
NdeII	GATC	5 cut(s)	52, 63, 265, 272, 496
NheI	GCTAGC	1 cut(s)	473
NlaIII	CATG	7 cut(s)	74, 172, 177, 439, 488, 525, 574
NlaIV	GGNNCC	4 cut(s)	23, 54, 212, 369
NspI	RCATGY	2 cut(s)	172, 488
PctI	GAATGC	1 cut(s)	232
PspEI	GGTNACC	1 cut(s)	89
PspN4I	GGNNCC	4 cut(s)	23, 54, 212, 369
PspOMI	GGGCCC	1 cut(s)	210
PspPI	GGNCC	4 cut(s)	22, 210, 211, 367
PsuI	RGATCY	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	2 cut(s)	440, 451
RsaNI	GTAC	2 cut(s)	439, 450
RseI	CAYNNNNRTG	2 cut(s)	75, 178
Sau3AI	GATC	5 cut(s)	52, 63, 265, 272, 496
Sau96I	GGNCC	4 cut(s)	22, 210, 211, 367
ScrFI	CCNGG	2 cut(s)	37, 371
SduI	GDGCHC	2 cut(s)	214, 519
SetI	ASST	5 cut(s)	280, 329, 475, 553, 584
SfaNI	GCATC	1 cut(s)	136
SinI	GGWCC	1 cut(s)	367
SmiMI	CAYNNNNRTG	2 cut(s)	75, 178
Sse9I	AATT	2 cut(s)	131, 563
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	3 cut(s)	81, 474, 583
StyD4I	CCNGG	2 cut(s)	35, 369
StyI	CCWWGG	3 cut(s)	70, 173, 521
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	2 cut(s)	190, 508
TasI	AATT	2 cut(s)	131, 563
TatI	WGTACW	2 cut(s)	438, 449
TscAI	CASTG	1 cut(s)	82
TspDTI	ATGAA	3 cut(s)	113, 125, 424
TspRI	CASTG	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	367
XceI	RCATGY	2 cut(s)	172, 488
XmiI	GTMKAC	1 cut(s)	544
XspI	CTAG	3 cut(s)	81, 474, 583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.