Rh1CG114300

Dip2/Utp12 Family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000668
Physical Location & Seq
Forward (+)
22998264 .. 23001421
3158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG114300.1

Sequence Viewer

Length: 957 bp
ATGATTTGTGGTGGTGTGTTGCTGCTTTCTTTTTTAAAGTCATTTACTGATTTTTGTATACCTTCACTGACCAACTTTGTTTGCCTGCTTCCTAGTAAAAATAAATCAAGGAGTCCAAGTGTGATCAGTTGGACCATACATTTAGGAGCATACGATTGGGAGAATCAGAAGATGAAGACTAAAAAGTCAAGTAAGAAGCGTGCAGCACTGGAGCTAGATACTCCGGCTATTAAAGACAAGGTTGAAATTGGTCATGGAGAGACTGCAGATGGAGTCCTTGTTGATCAGGATTTGAACGAACCAACCATGGGAGAAAAACTTGCTAGTTTGAATATAGTACCTGATGATAGAGTGGCGAGCCAAAATAAAGAAGGCTCTTCTCTCCATGCAAAGCCTCCGAGTGCAGACTCTGTTCATATTTTGCTTAAGCAAGCACTACATGCTGATGACCGTGCCCTTCTATTCGAGTGCTTATACACCCAAGATGAGAAGGTCATTGCAAAGTCTGTCTCTCAATTGAATCCAGCTGGTGTTTTGAAGCTCTTACAATCTCTCATATCTCTTATTGAGTCAAGGGGTGCAATTTTGGCGTGTGCACTTCCATGGCTGAGAAGTCTACTTCTTCAACATGCAAGTGGGATAGTGTCTCAAGAATCTTCTTTAAGTGCCTTGAACTCTTTATATCAGCTCATTGAGTCCAGAGTTTCCACTTTTCAGTCAGCTCTTCAACTATCAAGTGTTTTAGACTTGCTGTATACAGGGGTTGTTGATGATTTGGATGATGAGAATGGCACTACAGGTCCAGTTATTTACGAGGACAAAGATAGTGATGAAGAGGAATCTGAGGACGCCATGGAGACTGATCAAGACGATGAAGATGGTGAGGATTTGGATGCAGAACTTGGTGGTGTTGGCGACTTCGAAGGAATTGAAGGACTTGATGACTTGAGCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Utp12

Protein Analysis

318

Amino Acids

34.52

Weight (kDa)

4.37

Isoelectric Point (pI)

50.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Utp12 PF04003 150 - 251 1.4e-16 Dip2/Utp12 Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 184
AccI GTMKAC 3 cut(s) 58, 616, 755
AcyI GRCGYC 1 cut(s) 849
AfaI GTAC 1 cut(s) 339
AfiI CCNNNNNNNGG 1 cut(s) 308
AflII CTTAAG 1 cut(s) 425
AgsI TTSAA 9 cut(s) 245, 295, 331, 520, 538, 626, 673, 728, 932
AluBI AGCT 5 cut(s) 214, 527, 541, 688, 722
AluI AGCT 5 cut(s) 214, 527, 541, 688, 722
Alw21I GWGCWC 1 cut(s) 598
Alw26I GTCTC 4 cut(s) 254, 514, 651, 851
Alw44I GTGCAC 1 cut(s) 594
AlwNI CAGNNNCTG 1 cut(s) 410
ApaLI GTGCAC 1 cut(s) 594
ApeKI GCWGC 2 cut(s) 22, 203
AspS9I GGNCC 2 cut(s) 132, 800
AsuHPI GGTGA 1 cut(s) 893
AsuII TTCGAA 1 cut(s) 921
AvaII GGWCC 2 cut(s) 132, 800
BaeGI GKGCMC 2 cut(s) 457, 598
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 598
BbvI GCAGC 2 cut(s) 9, 215
BccI CCATC 2 cut(s) 263, 872
BclI TGATCA 3 cut(s) 123, 283, 862
BcoDI GTCTC 4 cut(s) 254, 514, 651, 851
BfaI CTAG 3 cut(s) 93, 215, 324
BfmI CTRYAG 2 cut(s) 264, 795
BfrI CTTAAG 1 cut(s) 425
BisI GCNGC 2 cut(s) 23, 204
BlsI GCNGC 2 cut(s) 24, 205
Bme18I GGWCC 2 cut(s) 132, 800
BmgT120I GGNCC 2 cut(s) 132, 800
BmsI GCATC 1 cut(s) 883
BpiI GAAGAC 1 cut(s) 182
BpmI CTGGAG 1 cut(s) 230
Bpu14I TTCGAA 1 cut(s) 921
BpuEI CTTGAG 1 cut(s) 633
BsaHI GRCGYC 1 cut(s) 849
BsaJI CCNNGG 3 cut(s) 306, 602, 852
BsaXI ACNNNNNCTCC 4 cut(s) 103, 133, 264, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse1I ACTGG 2 cut(s) 213, 803
Bse3DI GCAATG 1 cut(s) 495
BseDI CCNNGG 3 cut(s) 306, 602, 852
BseGI GGATG 2 cut(s) 784, 898
BseLI CCNNNNNNNGG 1 cut(s) 308
BseMI GCAATG 1 cut(s) 495
BseMII CTCAG 2 cut(s) 599, 834
BseNI ACTGG 2 cut(s) 213, 803
BseSI GKGCMC 2 cut(s) 457, 598
BseXI GCAGC 2 cut(s) 9, 215
BsgI GTGCAG 2 cut(s) 222, 423
BsiHKAI GWGCWC 1 cut(s) 598
BsiSI CCGG 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 308
BsmAI GTCTC 4 cut(s) 254, 514, 651, 851
Bsp119I TTCGAA 1 cut(s) 921
Bsp1286I GDGCHC 2 cut(s) 457, 598
Bsp143I GATC 3 cut(s) 123, 283, 862
Bsp19I CCATGG 3 cut(s) 306, 602, 852
BspCNI CTCAG 2 cut(s) 600, 835
BspMAI CTGCAG 1 cut(s) 268
BspQI GCTCTTC 2 cut(s) 382, 729
BspT104I TTCGAA 1 cut(s) 921
BspTI CTTAAG 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 495
BsrI ACTGG 2 cut(s) 213, 803
BssECI CCNNGG 3 cut(s) 306, 602, 852
BssMI GATC 3 cut(s) 123, 283, 862
BssNAI GTATAC 2 cut(s) 59, 756
BssNI GRCGYC 1 cut(s) 849
BssT1I CCWWGG 3 cut(s) 306, 602, 852
Bst1107I GTATAC 2 cut(s) 59, 756
Bst4CI ACNGT 1 cut(s) 452
Bst6I CTCTTC 3 cut(s) 382, 729, 828
BstACI GRCGYC 1 cut(s) 849
BstAFI CTTAAG 1 cut(s) 425
BstAPI GCANNNNNTGC 1 cut(s) 440
BstBI TTCGAA 1 cut(s) 921
BstC8I GCNNGC 4 cut(s) 86, 201, 358, 432
BstDEI CTNAG 2 cut(s) 608, 843
BstDSI CCRYGG 3 cut(s) 306, 602, 852
BstF5I GGATG 2 cut(s) 784, 898
BstKTI GATC 3 cut(s) 126, 286, 865
BstMAI GTCTC 4 cut(s) 254, 514, 651, 851
BstMBI GATC 3 cut(s) 123, 283, 862
BstMWI GCNNNNNNNGC 2 cut(s) 440, 587
BstNSI RCATGY 2 cut(s) 443, 632
BstSFI CTRYAG 2 cut(s) 264, 795
BstSLI GKGCMC 2 cut(s) 457, 598
BstV1I GCAGC 2 cut(s) 9, 215
BstV2I GAAGAC 1 cut(s) 182
BstZ17I GTATAC 2 cut(s) 59, 756
BtgI CCRYGG 3 cut(s) 306, 602, 852
BtsCI GGATG 2 cut(s) 784, 898
BtsIMutI CAGTG 2 cut(s) 65, 206
Cac8I GCNNGC 4 cut(s) 86, 201, 358, 432
CaiI CAGNNNCTG 1 cut(s) 410
Cfr13I GGNCC 2 cut(s) 132, 800
CseI GACGC 1 cut(s) 857
Csp6I GTAC 1 cut(s) 338
CviAII CATG 7 cut(s) 254, 307, 386, 440, 603, 629, 853
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 2 cut(s) 608, 843
DpnI GATC 3 cut(s) 125, 285, 864
DpnII GATC 3 cut(s) 123, 283, 862
DraI TTTAAA 1 cut(s) 36
DrdI GACNNNNNNGTC 1 cut(s) 184
DseDI GACNNNNNNGTC 1 cut(s) 184
Eam1104I CTCTTC 3 cut(s) 382, 729, 828
EarI CTCTTC 3 cut(s) 382, 729, 828
Eco130I CCWWGG 3 cut(s) 306, 602, 852
Eco47I GGWCC 2 cut(s) 132, 800
EcoT14I CCWWGG 3 cut(s) 306, 602, 852
ErhI CCWWGG 3 cut(s) 306, 602, 852
FaeI CATG 7 cut(s) 257, 310, 389, 443, 606, 632, 856
FatI CATG 7 cut(s) 253, 306, 385, 439, 602, 628, 852
FbaI TGATCA 3 cut(s) 123, 283, 862
FblI GTMKAC 3 cut(s) 58, 616, 755
Fnu4HI GCNGC 2 cut(s) 23, 204
FokI GGATG 2 cut(s) 791, 905
Fsp4HI GCNGC 2 cut(s) 23, 204
FspBI CTAG 3 cut(s) 93, 215, 324
GluI GCNGC 2 cut(s) 23, 204
GsuI CTGGAG 1 cut(s) 230
HapII CCGG 1 cut(s) 224
HgaI GACGC 1 cut(s) 857
Hin1I GRCGYC 1 cut(s) 849
Hin1II CATG 7 cut(s) 257, 310, 389, 443, 606, 632, 856
HinfI GANTC 9 cut(s) 112, 163, 273, 407, 520, 569, 653, 695, 839
HpaII CCGG 1 cut(s) 224
HphI GGTGA 1 cut(s) 893
Hpy166II GTNNAC 4 cut(s) 59, 596, 617, 756
Hpy188I TCNGA 3 cut(s) 168, 399, 844
Hpy188III TCNNGA 4 cut(s) 287, 650, 699, 866
Hpy8I GTNNAC 4 cut(s) 59, 596, 617, 756
HpyAV CCTTC 6 cut(s) 72, 365, 467, 484, 917, 926
HpyCH4III ACNGT 1 cut(s) 452
HpyCH4V TGCA 9 cut(s) 203, 266, 389, 404, 500, 581, 596, 632, 896
HpyF10VI GCNNNNNNNGC 2 cut(s) 440, 587
HpyF3I CTNAG 2 cut(s) 608, 843
Hsp92I GRCGYC 1 cut(s) 849
Hsp92II CATG 7 cut(s) 257, 310, 389, 443, 606, 632, 856
Ksp22I TGATCA 3 cut(s) 123, 283, 862
Kzo9I GATC 3 cut(s) 123, 283, 862
LguI GCTCTTC 2 cut(s) 382, 729
LmnI GCTCC 2 cut(s) 146, 211
Lsp1109I GCAGC 2 cut(s) 9, 215
LweI GCATC 1 cut(s) 883
MaeI CTAG 3 cut(s) 93, 215, 324
MalI GATC 3 cut(s) 125, 285, 864
MboI GATC 3 cut(s) 123, 283, 862
MboII GAAGA 8 cut(s) 181, 187, 369, 614, 648, 716, 845, 887
MfeI CAATTG 1 cut(s) 515
MhlI GDGCHC 2 cut(s) 457, 598
MluCI AATT 4 cut(s) 246, 515, 582, 927
MlyI GAGTC 5 cut(s) 121, 282, 401, 578, 704
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 5 cut(s) 405, 808, 829, 838, 877
MseI TTAA 4 cut(s) 35, 231, 426, 662
MslI CAYNNNNRTG 3 cut(s) 444, 601, 633
MspA1I CMGCKG 1 cut(s) 527
MspCI CTTAAG 1 cut(s) 425
MspI CCGG 1 cut(s) 224
MunI CAATTG 1 cut(s) 515
MwoI GCNNNNNNNGC 2 cut(s) 440, 587
NcoI CCATGG 3 cut(s) 306, 602, 852
NdeII GATC 3 cut(s) 123, 283, 862
NlaIII CATG 7 cut(s) 257, 310, 389, 443, 606, 632, 856
NspI RCATGY 2 cut(s) 443, 632
NspV TTCGAA 1 cut(s) 921
PciSI GCTCTTC 2 cut(s) 382, 729
PfeI GAWTC 4 cut(s) 163, 520, 653, 839
PkrI GCNGC 2 cut(s) 24, 205
PleI GAGTC 5 cut(s) 120, 281, 401, 577, 703
PpsI GAGTC 5 cut(s) 120, 281, 401, 577, 703
PspPI GGNCC 2 cut(s) 132, 800
PstI CTGCAG 1 cut(s) 268
PstNI CAGNNNCTG 1 cut(s) 410
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
RseI CAYNNNNRTG 3 cut(s) 444, 601, 633
SapI GCTCTTC 2 cut(s) 382, 729
SaqAI TTAA 4 cut(s) 35, 231, 426, 662
SatI GCNGC 2 cut(s) 23, 204
Sau3AI GATC 3 cut(s) 123, 283, 862
Sau96I GGNCC 2 cut(s) 132, 800
SchI GAGTC 5 cut(s) 121, 282, 401, 578, 704
SduI GDGCHC 2 cut(s) 457, 598
SfaNI GCATC 1 cut(s) 883
SfcI CTRYAG 2 cut(s) 264, 795
SfuI TTCGAA 1 cut(s) 921
SinI GGWCC 2 cut(s) 132, 800
SmiMI CAYNNNNRTG 3 cut(s) 444, 601, 633
SmlI CTYRAG 3 cut(s) 425, 648, 946
SmoI CTYRAG 3 cut(s) 425, 648, 946
Sse9I AATT 4 cut(s) 246, 515, 582, 927
SspMI CTAG 3 cut(s) 93, 215, 324
StyI CCWWGG 3 cut(s) 306, 602, 852
TaaI ACNGT 1 cut(s) 452
TaqI TCGA 2 cut(s) 465, 921
TasI AATT 4 cut(s) 246, 515, 582, 927
TfiI GAWTC 4 cut(s) 163, 520, 653, 839
Tru1I TTAA 4 cut(s) 35, 231, 426, 662
Tru9I TTAA 4 cut(s) 35, 231, 426, 662
TscAI CASTG 2 cut(s) 72, 213
TseI GCWGC 2 cut(s) 22, 203
TspDTI ATGAA 4 cut(s) 188, 404, 846, 888
TspRI CASTG 2 cut(s) 72, 213
Vha464I CTTAAG 1 cut(s) 425
VneI GTGCAC 1 cut(s) 594
VpaK11BI GGWCC 2 cut(s) 132, 800
XceI RCATGY 2 cut(s) 443, 632
XmiI GTMKAC 3 cut(s) 58, 616, 755
XspI CTAG 3 cut(s) 93, 215, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.