Rw5G048940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000668
Physical Location & Seq
Reverse (-)
84971790 .. 84978277
6488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G048940.1

Sequence Viewer

Length: 1362 bp
ATGGGCGGATGGGAAAAGAGATCATCAGACGTACCACCATCCGATAGTACTCCTCCTACTCAATCAGAAAGATCAAAATCCACAAATGTTGTTAGCATTGATGATCTCCCTGACTCTCTATTGGTTGAAATCCTATGTCGGTTTCCTAGCAAGGAATTCGTTTTCCAATGCAAATGTGTTTCTAAGCATTGGCTCAATCTCATCTCAGTTCCGTATTTGATTGGCCGCTTTCGAAATCTTCAAAGATTTCATAAGCAAACCTCAATAGCTCGTTCTCTGATAGACAGAAAAGGGGAGGAATTCCCCACTCCTAGAACAACACAGTCGTCATCCAATCTGCTAGCTCCACTGTTCAAAAGACTCGTGAGTTTCCATGCTTTGAAAAAAAAGCCATATGTGGTAGGAACATCTAATGATTTAGTTTTGTGCTGCCGAAGTCCACATGACCAACATGATTTCTACATTTGCAATCCATGCACAAGGCAATGGATTGCTCTTCCTCCCACCACTGGACGTCTCACGAATGTACCAGTTGGATTCATCTTGGTACCAGTAGTACTGTTAATATTAAAGGACTACAGGTGCAAGGTTGTGAGAATTCTTCCTCACGATTTATCTAAATCTCGTAGCGGTCATTTTTCCAAATTCATTGTTGAGGTATTCTCTTTTGAGACTAGTGAATGGAGAGAGTCAATTGTATCATCCCCACGAAGCATTCGGTTTGGACCTGCTACTAGCGTTGCTTACAATGGAATGTTGTATTGGGCATATAGAGAATTGAATAGTAACTTGACCGGTCAAATTCTTGACTTCTCGACCTTGACATTTCTTGACTACGGGTGGACTTGCTCTAATGGTGATGAGACTGTTGGCGATGATCATTATTACCAATTTAATATCTTTGATGCAGTTGATAAGCTTTTAGACAGGCCAAGTATATGTGTGCGCCGAGGGCGTCTGCGGTGGGCCTACAATAGATGGGACTATGATCTTATTGTTTGGGAGTTAACAGGTGATGATGATCTTGGATCAGCTGACAAATTCTATTTGAAAAAAGTGAGTGTTTATCCAGTAACCAGTGAAGTTGCTATATATGGTTATGCTCTTCTAGGTTTGGATCCGATTGATGAGGATAGATTTTATGTAAGAGTGCGTACTGACTATTTTGCGTACAACGAGTACCATTTTGCGTACAACGAGTTCCATTTCACGTACAACATTTGTACAAGAAAGTGGTCAAAAGTAGCTAGCACCGAGCATCTTGGTACAACATGCGAAGACTATCATCTCTTTCGATTGGTGCTCCCATTGTGGCCAACACCACTTCGTAGACCATCACTAGTTGAAGAATTACCCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

453

Amino Acids

52.5

Weight (kDa)

8.16

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 33 - 71 1.3e-06 F-box domain
b-prop_At3g26010-like PF24750 127 - 269 8.6e-12 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 517
Acc36I ACCTGC 1 cut(s) 736
Acc65I GGTACC 1 cut(s) 547
AccB1I GGYRCC 1 cut(s) 547
AccI GTMKAC 1 cut(s) 1330
AciI CCGC 4 cut(s) 6, 226, 630, 961
AclWI GGATC 3 cut(s) 1036, 1112, 1125
AcoI YGGCCR 2 cut(s) 223, 1313
AcsI RAATTY 6 cut(s) 155, 299, 597, 644, 801, 1040
AcyI GRCGYC 2 cut(s) 514, 955
AfiI CCNNNNNNNGG 1 cut(s) 509
AgeI ACCGGT 1 cut(s) 794
AgsI TTSAA 7 cut(s) 128, 242, 355, 382, 781, 1051, 1346
AhlI ACTAGT 2 cut(s) 674, 1339
AjuI GAANNNNNNNTTGG 2 cut(s) 745, 777
AluBI AGCT 5 cut(s) 269, 344, 919, 1034, 1247
AluI AGCT 5 cut(s) 269, 344, 919, 1034, 1247
Alw21I GWGCWC 1 cut(s) 1305
Alw26I GTCTC 3 cut(s) 521, 665, 857
AlwI GGATC 3 cut(s) 1036, 1112, 1125
AoxI GGCC 4 cut(s) 223, 929, 966, 1313
ApeKI GCWGC 1 cut(s) 429
ApoI RAATTY 6 cut(s) 155, 299, 597, 644, 801, 1040
AsiGI ACCGGT 1 cut(s) 794
Asp718I GGTACC 1 cut(s) 547
AspLEI GCGC 1 cut(s) 948
AspS9I GGNCC 2 cut(s) 725, 966
AsuHPI GGTGA 2 cut(s) 869, 1025
AsuII TTCGAA 1 cut(s) 232
AsuNHI GCTAGC 2 cut(s) 340, 1247
AvaII GGWCC 1 cut(s) 725
BaeI ACNNNNGTAYC 2 cut(s) 510, 543
BalI TGGCCA 1 cut(s) 1315
BamHI GGATCC 1 cut(s) 1117
BanI GGYRCC 1 cut(s) 547
BauI CACGAG 1 cut(s) 362
BbsI GAAGAC 1 cut(s) 1284
Bbv12I GWGCWC 1 cut(s) 1305
BbvI GCAGC 1 cut(s) 416
BccI CCATC 4 cut(s) 3, 46, 972, 1342
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BclI TGATCA 1 cut(s) 877
BcoDI GTCTC 3 cut(s) 521, 665, 857
BcuI ACTAGT 2 cut(s) 674, 1339
BfaI CTAG 8 cut(s) 147, 312, 341, 675, 735, 1109, 1248, 1340
BfmI CTRYAG 1 cut(s) 577
BfuAI ACCTGC 1 cut(s) 736
BisI GCNGC 2 cut(s) 226, 430
BlsI GCNGC 2 cut(s) 227, 431
BmcAI AGTACT 2 cut(s) 49, 558
Bme18I GGWCC 1 cut(s) 725
BmgT120I GGNCC 2 cut(s) 725, 966
BmiI GGNNCC 2 cut(s) 549, 1119
BmsI GCATC 2 cut(s) 895, 1267
BmtI GCTAGC 2 cut(s) 344, 1251
BpiI GAAGAC 1 cut(s) 1284
BplI GAGNNNNNCTC 2 cut(s) 647, 679
Bpu14I TTCGAA 1 cut(s) 232
BsaAI YACGTR 1 cut(s) 1212
BsaBI GATNNNNATC 2 cut(s) 76, 1020
BsaHI GRCGYC 2 cut(s) 514, 955
BsaJI CCNNGG 1 cut(s) 949
BsaWI WCCGGW 1 cut(s) 794
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse118I RCCGGY 1 cut(s) 794
Bse1I ACTGG 5 cut(s) 514, 530, 551, 1070, 1077
Bse3DI GCAATG 1 cut(s) 491
Bse8I GATNNNNATC 2 cut(s) 76, 1020
BseDI CCNNGG 1 cut(s) 949
BseGI GGATG 4 cut(s) 14, 38, 329, 701
BseJI GATNNNNATC 2 cut(s) 76, 1020
BseLI CCNNNNNNNGG 1 cut(s) 509
BseMI GCAATG 1 cut(s) 491
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 5 cut(s) 514, 530, 551, 1070, 1077
BseRI GAGGAG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 416
BshFI GGCC 4 cut(s) 225, 931, 968, 1315
BshNI GGYRCC 1 cut(s) 547
BshTI ACCGGT 1 cut(s) 794
BsiHKAI GWGCWC 1 cut(s) 1305
BsiSI CCGG 1 cut(s) 795
BslFI GGGAC 1 cut(s) 995
BslI CCNNNNNNNGG 1 cut(s) 509
BsmAI GTCTC 3 cut(s) 521, 665, 857
BsmBI CGTCTC 1 cut(s) 521
BsmFI GGGAC 1 cut(s) 995
BsmI GAATGC 1 cut(s) 714
BsnI GGCC 4 cut(s) 225, 931, 968, 1315
Bsp119I TTCGAA 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 1305
Bsp1407I TGTACA 1 cut(s) 1223
Bsp143I GATC 8 cut(s) 20, 71, 103, 877, 988, 1021, 1028, 1117
BspACI CCGC 4 cut(s) 6, 226, 630, 961
BspANI GGCC 4 cut(s) 225, 931, 968, 1315
BspCNI CTCAG 1 cut(s) 218
BspLI GGNNCC 2 cut(s) 549, 1119
BspMI ACCTGC 1 cut(s) 736
BspOI GCTAGC 2 cut(s) 344, 1251
BspPI GGATC 3 cut(s) 1036, 1112, 1125
BspQI GCTCTTC 2 cut(s) 501, 1110
BspT104I TTCGAA 1 cut(s) 232
BspT107I GGYRCC 1 cut(s) 547
BsrDI GCAATG 1 cut(s) 491
BsrFI RCCGGY 1 cut(s) 794
BsrGI TGTACA 1 cut(s) 1223
BsrI ACTGG 5 cut(s) 514, 530, 551, 1070, 1077
BssAI RCCGGY 1 cut(s) 794
BssECI CCNNGG 1 cut(s) 949
BssMI GATC 8 cut(s) 20, 71, 103, 877, 988, 1021, 1028, 1117
BssNI GRCGYC 2 cut(s) 514, 955
BssSI CACGAG 1 cut(s) 362
Bst2BI CACGAG 1 cut(s) 362
Bst4CI ACNGT 4 cut(s) 324, 351, 561, 868
Bst6I CTCTTC 2 cut(s) 501, 1110
BstACI GRCGYC 2 cut(s) 514, 955
BstAPI GCANNNNNTGC 1 cut(s) 474
BstAUI TGTACA 1 cut(s) 1223
BstBAI YACGTR 1 cut(s) 1212
BstBI TTCGAA 1 cut(s) 232
BstC8I GCNNGC 2 cut(s) 342, 1249
BstDEI CTNAG 2 cut(s) 183, 205
BstF5I GGATG 4 cut(s) 14, 38, 329, 701
BstHHI GCGC 1 cut(s) 948
BstKTI GATC 8 cut(s) 23, 74, 106, 880, 991, 1024, 1031, 1120
BstMAI GTCTC 3 cut(s) 521, 665, 857
BstMBI GATC 8 cut(s) 20, 71, 103, 877, 988, 1021, 1028, 1117
BstMWI GCNNNNNNNGC 2 cut(s) 474, 952
BstNSI RCATGY 1 cut(s) 1275
BstSFI CTRYAG 1 cut(s) 577
BstV1I GCAGC 1 cut(s) 416
BstV2I GAAGAC 1 cut(s) 1284
BstX2I RGATCY 1 cut(s) 1117
BstYI RGATCY 1 cut(s) 1117
BsuRI GGCC 4 cut(s) 225, 931, 968, 1315
BtgZI GCGATG 1 cut(s) 888
BtsCI GGATG 4 cut(s) 14, 38, 329, 701
BtsIMutI CAGTG 3 cut(s) 347, 507, 1084
BveI ACCTGC 1 cut(s) 736
Cac8I GCNNGC 2 cut(s) 342, 1249
CfoI GCGC 1 cut(s) 948
Cfr10I RCCGGY 1 cut(s) 794
Cfr13I GGNCC 2 cut(s) 725, 966
CseI GACGC 1 cut(s) 944
CspAI ACCGGT 1 cut(s) 794
CspCI CAANNNNNGTGG 2 cut(s) 70, 105
CviAII CATG 5 cut(s) 374, 443, 452, 474, 1272
DdeI CTNAG 2 cut(s) 183, 205
DpnI GATC 8 cut(s) 22, 73, 105, 879, 990, 1023, 1030, 1119
DpnII GATC 8 cut(s) 20, 71, 103, 877, 988, 1021, 1028, 1117
EaeI YGGCCR 2 cut(s) 223, 1313
Eam1104I CTCTTC 2 cut(s) 501, 1110
EarI CTCTTC 2 cut(s) 501, 1110
EciI GGCGGA 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 725
EcoRI GAATTC 3 cut(s) 155, 299, 597
Esp3I CGTCTC 1 cut(s) 521
FaeI CATG 5 cut(s) 377, 446, 455, 477, 1275
FaqI GGGAC 1 cut(s) 995
FatI CATG 5 cut(s) 373, 442, 451, 473, 1271
FauNDI CATATG 1 cut(s) 394
FbaI TGATCA 1 cut(s) 877
FblI GTMKAC 1 cut(s) 1330
Fnu4HI GCNGC 2 cut(s) 226, 430
FokI GGATG 4 cut(s) 21, 25, 316, 688
Fsp4HI GCNGC 2 cut(s) 226, 430
FspBI CTAG 8 cut(s) 147, 312, 341, 675, 735, 1109, 1248, 1340
GlaI GCGC 1 cut(s) 947
GluI GCNGC 2 cut(s) 226, 430
HaeIII GGCC 4 cut(s) 225, 931, 968, 1315
HapII CCGG 1 cut(s) 795
HgaI GACGC 1 cut(s) 944
HhaI GCGC 1 cut(s) 948
Hin1I GRCGYC 2 cut(s) 514, 955
Hin1II CATG 5 cut(s) 377, 446, 455, 477, 1275
Hin6I GCGC 1 cut(s) 946
HinP1I GCGC 1 cut(s) 946
HincII GTYRAC 1 cut(s) 1008
HindII GTYRAC 1 cut(s) 1008
HindIII AAGCTT 1 cut(s) 917
HinfI GANTC 4 cut(s) 113, 360, 537, 689
HpaI GTTAAC 1 cut(s) 1008
HpaII CCGG 1 cut(s) 795
HphI GGTGA 2 cut(s) 869, 1025
Hpy166II GTNNAC 4 cut(s) 440, 843, 1008, 1331
Hpy188I TCNGA 5 cut(s) 28, 43, 67, 279, 1122
Hpy188III TCNNGA 6 cut(s) 364, 520, 608, 806, 814, 830
Hpy8I GTNNAC 4 cut(s) 440, 843, 1008, 1331
HpyCH4III ACNGT 4 cut(s) 324, 351, 561, 868
HpyCH4IV ACGT 3 cut(s) 30, 514, 1211
HpyCH4V TGCA 5 cut(s) 171, 468, 477, 585, 908
HpyF10VI GCNNNNNNNGC 2 cut(s) 474, 952
HpyF3I CTNAG 2 cut(s) 183, 205
HpySE526I ACGT 3 cut(s) 30, 514, 1211
Hsp92I GRCGYC 2 cut(s) 514, 955
Hsp92II CATG 5 cut(s) 377, 446, 455, 477, 1275
HspAI GCGC 1 cut(s) 946
KpnI GGTACC 1 cut(s) 551
Ksp22I TGATCA 1 cut(s) 877
KspAI GTTAAC 1 cut(s) 1008
Kzo9I GATC 8 cut(s) 20, 71, 103, 877, 988, 1021, 1028, 1117
LguI GCTCTTC 2 cut(s) 501, 1110
LmnI GCTCC 2 cut(s) 349, 1308
Lsp1109I GCAGC 1 cut(s) 416
LweI GCATC 2 cut(s) 895, 1267
MaeI CTAG 8 cut(s) 147, 312, 341, 675, 735, 1109, 1248, 1340
MaeII ACGT 3 cut(s) 30, 514, 1211
MaeIII GTNAC 2 cut(s) 785, 1072
MalI GATC 8 cut(s) 22, 73, 105, 879, 990, 1023, 1030, 1119
MboI GATC 8 cut(s) 20, 71, 103, 877, 988, 1021, 1028, 1117
MboII GAAGA 6 cut(s) 230, 488, 593, 1097, 1289, 1358
MfeI CAATTG 1 cut(s) 693
MflI RGATCY 1 cut(s) 1117
MhlI GDGCHC 1 cut(s) 1305
MlsI TGGCCA 1 cut(s) 1315
MluNI TGGCCA 1 cut(s) 1315
MlyI GAGTC 3 cut(s) 107, 354, 698
MmeI TCCRAC 1 cut(s) 514
MnlI CCTC 8 cut(s) 63, 271, 289, 510, 615, 649, 944, 1123
Mox20I TGGCCA 1 cut(s) 1315
MscI TGGCCA 1 cut(s) 1315
MseI TTAA 4 cut(s) 563, 569, 894, 1007
Msp20I TGGCCA 1 cut(s) 1315
MspA1I CMGCKG 1 cut(s) 1034
MspI CCGG 1 cut(s) 795
MunI CAATTG 1 cut(s) 693
Mva1269I GAATGC 1 cut(s) 714
MwoI GCNNNNNNNGC 2 cut(s) 474, 952
NdeI CATATG 1 cut(s) 394
NdeII GATC 8 cut(s) 20, 71, 103, 877, 988, 1021, 1028, 1117
NheI GCTAGC 2 cut(s) 340, 1247
NlaIII CATG 5 cut(s) 377, 446, 455, 477, 1275
NlaIV GGNNCC 2 cut(s) 549, 1119
NmeAIII GCCGAG 1 cut(s) 974
NspI RCATGY 1 cut(s) 1275
NspV TTCGAA 1 cut(s) 232
PciSI GCTCTTC 2 cut(s) 501, 1110
PctI GAATGC 1 cut(s) 714
PfeI GAWTC 1 cut(s) 537
PinAI ACCGGT 1 cut(s) 794
PkrI GCNGC 2 cut(s) 227, 431
PleI GAGTC 3 cut(s) 107, 354, 697
PpsI GAGTC 3 cut(s) 107, 354, 697
Ppu21I YACGTR 1 cut(s) 1212
PspN4I GGNNCC 2 cut(s) 549, 1119
PspPI GGNCC 2 cut(s) 725, 966
PsrI GAACNNNNNNTAC 2 cut(s) 1184, 1216
PsuI RGATCY 1 cut(s) 1117
PvuII CAGCTG 1 cut(s) 1034
SapI GCTCTTC 2 cut(s) 501, 1110
SaqAI TTAA 4 cut(s) 563, 569, 894, 1007
SatI GCNGC 2 cut(s) 226, 430
Sau3AI GATC 8 cut(s) 20, 71, 103, 877, 988, 1021, 1028, 1117
Sau96I GGNCC 2 cut(s) 725, 966
ScaI AGTACT 2 cut(s) 49, 558
SchI GAGTC 3 cut(s) 107, 354, 698
SduI GDGCHC 1 cut(s) 1305
SfaNI GCATC 2 cut(s) 895, 1267
SfcI CTRYAG 1 cut(s) 577
SfuI TTCGAA 1 cut(s) 232
SinI GGWCC 1 cut(s) 725
SpeI ACTAGT 2 cut(s) 674, 1339
SsiI CCGC 4 cut(s) 6, 226, 630, 961
SspI AATATT 1 cut(s) 567
SspMI CTAG 8 cut(s) 147, 312, 341, 675, 735, 1109, 1248, 1340
TaaI ACNGT 4 cut(s) 324, 351, 561, 868
TaiI ACGT 3 cut(s) 33, 517, 1214
TaqI TCGA 3 cut(s) 232, 815, 1294
TatI WGTACW 3 cut(s) 47, 556, 1223
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 1 cut(s) 537
Tru1I TTAA 4 cut(s) 563, 569, 894, 1007
Tru9I TTAA 4 cut(s) 563, 569, 894, 1007
TscAI CASTG 3 cut(s) 354, 514, 1084
TseI GCWGC 1 cut(s) 429
TspDTI ATGAA 3 cut(s) 239, 529, 637
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 3 cut(s) 354, 514, 1084
VpaK11BI GGWCC 1 cut(s) 725
XapI RAATTY 6 cut(s) 155, 299, 597, 644, 801, 1040
XceI RCATGY 1 cut(s) 1275
XmiI GTMKAC 1 cut(s) 1330
XspI CTAG 8 cut(s) 147, 312, 341, 675, 735, 1109, 1248, 1340
ZraI GACGTC 1 cut(s) 515
ZrmI AGTACT 2 cut(s) 49, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.