RLG00000036919

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000668
Physical Location & Seq
Reverse (-)
86528955 .. 86530361
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036919

Sequence Viewer

Length: 1407 bp
ATGGGCGGATGGGAGAAAAGATCATCAGACGTACCACCATCCCATAGTACTCCTCCTACTCAATCAGAAAGATCAAAATCCACAAATGTTGTTAGCATTGATGATCTCCCTGACTCTCTGTTGGTTGAAATCCTATATCGGCTTCCTAGCAAGGAATTCTTTTTCCAATGCAAATGTGTTTCTAAGCATTGGCTCAATCTCATCTCAGATCCGTATTTTATTGGCCGCTTTCTACATCTTCAAAGATTTCATAAGCAAACCCCAATAGCACGTTCTCTGATAGACAGAAAAGGGGAGGAATATTTCCCCACTCCTATAACAACACGGTCGTCATCCAATCTGCTAGCTCCGCTGTTCAAAAGACTCATGAGTTTCCATGGTTTGAAAAAAAAGCCATTTGTGGTAGGAACATCTAATGATTTAGTTTTGTGCTGCCGAAGTCCAAATGACCAACGTGATTTCTACATTTGCAATCCATGCACAAGGCAATGGATTGCTCTTCCTCCCACCACTGGACGTCTCACGAATGTACCAGTTGGATTTATCTGTGATCGCTACTATGAGGAGGAACATAGTACTAGTGGTACCAGTAGTACTGTTAATATTAAAAAGGTCTACAGGTGCAGGGTTGTGAGAATTGTTCCTCACGAATTGTCTAAATCTTTTTGCAGTCATTTTTCCAAATTCATTGTTGAGGTATTCTCTTTTGAGACTGGAGAATGGAGAGAGTCAATTGTATCATCCCCACGAAGCATTCGATTTGGACCTGCTACTAGCGTTGCTTACAATGGAATGTTGTATTGGACGTATAGGGAATATGAGCAGCGTTACGAGACCGGGCTTTTTAGGCTGGATCCGTTTTTGATCGGCAATGGCAGTGCTAGTAGTGGTAGCCCTAATTGTGATGCGACTGTTGGCGATGATCATTATTACCAATTTAATATATTTGATGTAATTGATGAGCTTTGGGACAGGCCATGTATATGTGTGTGCCGAGGGCGTCTGCAAATGTGGGCCTACAATAGATGGGCCTATGAACTTGTTGTTTGGGAGTTAACAGGTGATGATGATCTTGGATCAGCTGACAAATTCTATATGAAAAAAGTGAGTGTTTATCCAGTAGCCCGTGAAGTTGCAATATATGGTTATGTTCTTCAAGGTTTGAATCCGATTGATGAGGATAGATCTTATGTAAAAGTGCGTACTGACTATTTCATGCGCGGCGACCATTCTGCGTACAACGCGTACCATTTCACATACAACATTTGTACAAGAAAGTGGTCAAAAGTAGCTAGCACCGAGCATCTTGGTACAACATGCGAAGACTATCATCTCTGTCGATTGGTGCTCCCATTGTGGCCAACACCACTTCGGAGACTATCACTGGTTGAAGAATTACCCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

469

Amino Acids

54.24

Weight (kDa)

8.23

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 33 - 73 2.4e-07 F-box domain
b-prop_At3g26010-like PF24750 129 - 285 1.1e-11 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 520
Acc36I ACCTGC 1 cut(s) 775
Acc65I GGTACC 1 cut(s) 584
AccB1I GGYRCC 1 cut(s) 584
AccI GTMKAC 1 cut(s) 615
AccII CGCG 2 cut(s) 1221, 1244
AciI CCGC 4 cut(s) 6, 226, 350, 1221
AclWI GGATC 4 cut(s) 203, 848, 861, 1084
AcoI YGGCCR 2 cut(s) 223, 1358
AcsI RAATTY 3 cut(s) 155, 683, 1088
AcyI GRCGYC 2 cut(s) 517, 1000
AfiI CCNNNNNNNGG 1 cut(s) 512
AflIII ACRYGT 1 cut(s) 1242
AgsI TTSAA 7 cut(s) 128, 242, 358, 385, 1157, 1165, 1391
AhlI ACTAGT 1 cut(s) 578
AjuI GAANNNNNNNTTGG 4 cut(s) 256, 288, 784, 816
AluBI AGCT 4 cut(s) 347, 964, 1082, 1292
AluI AGCT 4 cut(s) 347, 964, 1082, 1292
Alw21I GWGCWC 1 cut(s) 1350
Alw26I GTCTC 4 cut(s) 524, 704, 827, 1369
AlwI GGATC 4 cut(s) 203, 848, 861, 1084
AoxI GGCC 5 cut(s) 223, 974, 1014, 1029, 1358
ApeKI GCWGC 2 cut(s) 432, 823
ApoI RAATTY 3 cut(s) 155, 683, 1088
Asp718I GGTACC 1 cut(s) 584
AspLEI GCGC 1 cut(s) 1221
AspS9I GGNCC 3 cut(s) 764, 1014, 1029
AsuC2I CCSGG 1 cut(s) 838
AsuHPI GGTGA 1 cut(s) 1073
AsuNHI GCTAGC 2 cut(s) 343, 1292
AvaII GGWCC 1 cut(s) 764
BaeI ACNNNNGTAYC 2 cut(s) 513, 546
BalI TGGCCA 1 cut(s) 1360
BamHI GGATCC 1 cut(s) 853
BanI GGYRCC 1 cut(s) 584
BbsI GAAGAC 1 cut(s) 1329
Bbv12I GWGCWC 1 cut(s) 1350
BbvI GCAGC 2 cut(s) 419, 835
BccI CCATC 3 cut(s) 3, 46, 1020
BcgI CGANNNNNNTGC 2 cut(s) 1214, 1248
BclI TGATCA 1 cut(s) 922
BcnI CCSGG 1 cut(s) 838
BcoDI GTCTC 4 cut(s) 524, 704, 827, 1369
BcuI ACTAGT 1 cut(s) 578
BfaI CTAG 6 cut(s) 147, 344, 579, 774, 882, 1293
BfmI CTRYAG 1 cut(s) 616
BfuAI ACCTGC 1 cut(s) 775
BglII AGATCT 1 cut(s) 1184
BisI GCNGC 4 cut(s) 226, 433, 824, 1222
BlsI GCNGC 4 cut(s) 227, 434, 825, 1223
BmcAI AGTACT 3 cut(s) 49, 577, 595
Bme1390I CCNGG 1 cut(s) 838
Bme18I GGWCC 1 cut(s) 764
BmgT120I GGNCC 3 cut(s) 764, 1014, 1029
BmiI GGNNCC 2 cut(s) 586, 855
BmrFI CCNGG 1 cut(s) 838
BmsI GCATC 2 cut(s) 895, 1312
BmtI GCTAGC 2 cut(s) 347, 1296
BpiI GAAGAC 1 cut(s) 1329
BplI GAGNNNNNCTC 2 cut(s) 686, 718
BpmI CTGGAG 1 cut(s) 735
BpuMI CCSGG 1 cut(s) 838
BsaBI GATNNNNATC 2 cut(s) 76, 1068
BsaHI GRCGYC 2 cut(s) 517, 1000
BsaI GGTCTC 1 cut(s) 827
BsaJI CCNNGG 2 cut(s) 376, 994
Bsc4I CCNNNNNNNGG 1 cut(s) 512
Bse1I ACTGG 6 cut(s) 517, 533, 588, 718, 1118, 1389
Bse3DI GCAATG 2 cut(s) 494, 877
Bse8I GATNNNNATC 2 cut(s) 76, 1068
BseDI CCNNGG 2 cut(s) 376, 994
BseGI GGATG 4 cut(s) 14, 38, 332, 740
BseJI GATNNNNATC 2 cut(s) 76, 1068
BseLI CCNNNNNNNGG 1 cut(s) 512
BseMI GCAATG 2 cut(s) 494, 877
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 6 cut(s) 517, 533, 588, 718, 1118, 1389
BseRI GAGGAG 2 cut(s) 42, 578
BseXI GCAGC 2 cut(s) 419, 835
BsgI GTGCAG 1 cut(s) 643
Bsh1236I CGCG 2 cut(s) 1221, 1244
Bsh1285I CGRYCG 1 cut(s) 329
BshFI GGCC 5 cut(s) 225, 976, 1016, 1031, 1360
BshNI GGYRCC 1 cut(s) 584
BsiEI CGRYCG 1 cut(s) 329
BsiHKAI GWGCWC 1 cut(s) 1350
BsiSI CCGG 1 cut(s) 837
BslFI GGGAC 1 cut(s) 983
BslI CCNNNNNNNGG 1 cut(s) 512
BsmAI GTCTC 4 cut(s) 524, 704, 827, 1369
BsmBI CGTCTC 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 983
BsmI GAATGC 1 cut(s) 753
BsnI GGCC 5 cut(s) 225, 976, 1016, 1031, 1360
Bso31I GGTCTC 1 cut(s) 827
Bsp1286I GDGCHC 1 cut(s) 1350
Bsp1407I TGTACA 1 cut(s) 1268
Bsp19I CCATGG 1 cut(s) 376
BspACI CCGC 4 cut(s) 6, 226, 350, 1221
BspANI GGCC 5 cut(s) 225, 976, 1016, 1031, 1360
BspCNI CTCAG 1 cut(s) 218
BspFNI CGCG 2 cut(s) 1221, 1244
BspHI TCATGA 1 cut(s) 366
BspLI GGNNCC 2 cut(s) 586, 855
BspMI ACCTGC 1 cut(s) 775
BspOI GCTAGC 2 cut(s) 347, 1296
BspPI GGATC 4 cut(s) 203, 848, 861, 1084
BspQI GCTCTTC 1 cut(s) 504
BspT107I GGYRCC 1 cut(s) 584
BspTNI GGTCTC 1 cut(s) 827
BsrDI GCAATG 2 cut(s) 494, 877
BsrGI TGTACA 1 cut(s) 1268
BsrI ACTGG 6 cut(s) 517, 533, 588, 718, 1118, 1389
BssECI CCNNGG 2 cut(s) 376, 994
BssNI GRCGYC 2 cut(s) 517, 1000
BssT1I CCWWGG 1 cut(s) 376
Bst4CI ACNGT 3 cut(s) 327, 598, 913
Bst6I CTCTTC 1 cut(s) 504
BstACI GRCGYC 2 cut(s) 517, 1000
BstAPI GCANNNNNTGC 1 cut(s) 477
BstAUI TGTACA 1 cut(s) 1268
BstC8I GCNNGC 2 cut(s) 345, 1294
BstDEI CTNAG 2 cut(s) 183, 205
BstDSI CCRYGG 1 cut(s) 376
BstF5I GGATG 4 cut(s) 14, 38, 332, 740
BstFNI CGCG 2 cut(s) 1221, 1244
BstHHI GCGC 1 cut(s) 1221
BstMAI GTCTC 4 cut(s) 524, 704, 827, 1369
BstMCI CGRYCG 1 cut(s) 329
BstMWI GCNNNNNNNGC 4 cut(s) 349, 477, 847, 1241
BstNSI RCATGY 1 cut(s) 1320
BstSCI CCNGG 1 cut(s) 836
BstSFI CTRYAG 1 cut(s) 616
BstUI CGCG 2 cut(s) 1221, 1244
BstV1I GCAGC 2 cut(s) 419, 835
BstV2I GAAGAC 1 cut(s) 1329
BstX2I RGATCY 3 cut(s) 208, 853, 1184
BstYI RGATCY 3 cut(s) 208, 853, 1184
BsuRI GGCC 5 cut(s) 225, 976, 1016, 1031, 1360
BtgI CCRYGG 1 cut(s) 376
BtgZI GCGATG 1 cut(s) 933
BtsCI GGATG 4 cut(s) 14, 38, 332, 740
BtsI GCAGTG 1 cut(s) 883
BtsIMutI CAGTG 3 cut(s) 510, 883, 1382
BveI ACCTGC 1 cut(s) 775
Cac8I GCNNGC 2 cut(s) 345, 1294
CciI TCATGA 1 cut(s) 366
CfoI GCGC 1 cut(s) 1221
Cfr13I GGNCC 3 cut(s) 764, 1014, 1029
CseI GACGC 1 cut(s) 989
CspCI CAANNNNNGTGG 2 cut(s) 70, 105
CviAII CATG 6 cut(s) 367, 377, 477, 978, 1216, 1317
DdeI CTNAG 2 cut(s) 183, 205
EaeI YGGCCR 2 cut(s) 223, 1358
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
EciI GGCGGA 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 376
Eco31I GGTCTC 1 cut(s) 827
Eco47I GGWCC 1 cut(s) 764
EcoRI GAATTC 1 cut(s) 155
EcoT14I CCWWGG 1 cut(s) 376
ErhI CCWWGG 1 cut(s) 376
Esp3I CGTCTC 1 cut(s) 524
FaeI CATG 6 cut(s) 370, 380, 480, 981, 1219, 1320
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 1 cut(s) 983
FatI CATG 6 cut(s) 366, 376, 476, 977, 1215, 1316
FbaI TGATCA 1 cut(s) 922
FblI GTMKAC 1 cut(s) 615
Fnu4HI GCNGC 4 cut(s) 226, 433, 824, 1222
FokI GGATG 4 cut(s) 21, 25, 319, 727
Fsp4HI GCNGC 4 cut(s) 226, 433, 824, 1222
FspBI CTAG 6 cut(s) 147, 344, 579, 774, 882, 1293
GlaI GCGC 1 cut(s) 1220
GluI GCNGC 4 cut(s) 226, 433, 824, 1222
GsuI CTGGAG 1 cut(s) 735
HaeIII GGCC 5 cut(s) 225, 976, 1016, 1031, 1360
HapII CCGG 1 cut(s) 837
HgaI GACGC 1 cut(s) 989
HhaI GCGC 1 cut(s) 1221
Hin1I GRCGYC 2 cut(s) 517, 1000
Hin1II CATG 6 cut(s) 370, 380, 480, 981, 1219, 1320
Hin6I GCGC 1 cut(s) 1219
HinP1I GCGC 1 cut(s) 1219
HincII GTYRAC 1 cut(s) 1056
HindII GTYRAC 1 cut(s) 1056
HinfI GANTC 4 cut(s) 113, 363, 728, 1165
HpaI GTTAAC 1 cut(s) 1056
HpaII CCGG 1 cut(s) 837
HphI GGTGA 1 cut(s) 1073
Hpy166II GTNNAC 2 cut(s) 616, 1056
Hpy188I TCNGA 6 cut(s) 28, 67, 208, 279, 1170, 1374
Hpy188III TCNNGA 3 cut(s) 367, 523, 647
Hpy8I GTNNAC 2 cut(s) 616, 1056
HpyCH4III ACNGT 3 cut(s) 327, 598, 913
HpyCH4IV ACGT 5 cut(s) 30, 271, 454, 517, 806
HpyCH4V TGCA 7 cut(s) 171, 471, 480, 624, 669, 1006, 1136
HpyF10VI GCNNNNNNNGC 4 cut(s) 349, 477, 847, 1241
HpyF3I CTNAG 2 cut(s) 183, 205
HpySE526I ACGT 5 cut(s) 30, 271, 454, 517, 806
Hsp92I GRCGYC 2 cut(s) 517, 1000
Hsp92II CATG 6 cut(s) 370, 380, 480, 981, 1219, 1320
HspAI GCGC 1 cut(s) 1219
KpnI GGTACC 1 cut(s) 588
Ksp22I TGATCA 1 cut(s) 922
KspAI GTTAAC 1 cut(s) 1056
LguI GCTCTTC 1 cut(s) 504
LmnI GCTCC 2 cut(s) 352, 1353
Lsp1109I GCAGC 2 cut(s) 419, 835
LweI GCATC 2 cut(s) 895, 1312
MaeI CTAG 6 cut(s) 147, 344, 579, 774, 882, 1293
MaeII ACGT 5 cut(s) 30, 271, 454, 517, 806
MaeIII GTNAC 1 cut(s) 827
MboII GAAGA 5 cut(s) 230, 491, 1145, 1334, 1403
MfeI CAATTG 1 cut(s) 732
MflI RGATCY 3 cut(s) 208, 853, 1184
MhlI GDGCHC 1 cut(s) 1350
MlsI TGGCCA 1 cut(s) 1360
MluI ACGCGT 1 cut(s) 1242
MluNI TGGCCA 1 cut(s) 1360
MlyI GAGTC 3 cut(s) 107, 357, 737
MmeI TCCRAC 1 cut(s) 517
MnlI CCTC 9 cut(s) 63, 289, 513, 556, 559, 654, 688, 989, 1171
Mox20I TGGCCA 1 cut(s) 1360
MscI TGGCCA 1 cut(s) 1360
MseI TTAA 4 cut(s) 600, 606, 939, 1055
MslI CAYNNNNRTG 1 cut(s) 982
Msp20I TGGCCA 1 cut(s) 1360
MspA1I CMGCKG 2 cut(s) 352, 1082
MspI CCGG 1 cut(s) 837
MspR9I CCNGG 1 cut(s) 838
MunI CAATTG 1 cut(s) 732
Mva1269I GAATGC 1 cut(s) 753
MvnI CGCG 2 cut(s) 1221, 1244
MwoI GCNNNNNNNGC 4 cut(s) 349, 477, 847, 1241
NciI CCSGG 1 cut(s) 838
NcoI CCATGG 1 cut(s) 376
NheI GCTAGC 2 cut(s) 343, 1292
NlaIII CATG 6 cut(s) 370, 380, 480, 981, 1219, 1320
NlaIV GGNNCC 2 cut(s) 586, 855
NmeAIII GCCGAG 1 cut(s) 1019
NspI RCATGY 1 cut(s) 1320
PagI TCATGA 1 cut(s) 366
PciSI GCTCTTC 1 cut(s) 504
PcsI WCGNNNNNNNCGW 1 cut(s) 754
PctI GAATGC 1 cut(s) 753
PfeI GAWTC 1 cut(s) 1165
PkrI GCNGC 4 cut(s) 227, 434, 825, 1223
PleI GAGTC 3 cut(s) 107, 357, 736
PpsI GAGTC 3 cut(s) 107, 357, 736
PspN4I GGNNCC 2 cut(s) 586, 855
PspPI GGNCC 3 cut(s) 764, 1014, 1029
PsuI RGATCY 3 cut(s) 208, 853, 1184
PvuII CAGCTG 1 cut(s) 1082
RseI CAYNNNNRTG 1 cut(s) 982
SapI GCTCTTC 1 cut(s) 504
SaqAI TTAA 4 cut(s) 600, 606, 939, 1055
SatI GCNGC 4 cut(s) 226, 433, 824, 1222
Sau96I GGNCC 3 cut(s) 764, 1014, 1029
ScaI AGTACT 3 cut(s) 49, 577, 595
SchI GAGTC 3 cut(s) 107, 357, 737
ScrFI CCNGG 1 cut(s) 838
SduI GDGCHC 1 cut(s) 1350
SfaNI GCATC 2 cut(s) 895, 1312
SfcI CTRYAG 1 cut(s) 616
SinI GGWCC 1 cut(s) 764
SmiMI CAYNNNNRTG 1 cut(s) 982
SpeI ACTAGT 1 cut(s) 578
SsiI CCGC 4 cut(s) 6, 226, 350, 1221
SspI AATATT 2 cut(s) 302, 604
SspMI CTAG 6 cut(s) 147, 344, 579, 774, 882, 1293
StyD4I CCNGG 1 cut(s) 836
StyI CCWWGG 1 cut(s) 376
TaaI ACNGT 3 cut(s) 327, 598, 913
TaiI ACGT 5 cut(s) 33, 274, 457, 520, 809
TaqI TCGA 2 cut(s) 757, 1339
TatI WGTACW 4 cut(s) 47, 575, 593, 1268
TauI GCSGC 2 cut(s) 228, 1224
TfiI GAWTC 1 cut(s) 1165
Tru1I TTAA 4 cut(s) 600, 606, 939, 1055
Tru9I TTAA 4 cut(s) 600, 606, 939, 1055
TscAI CASTG 3 cut(s) 517, 883, 1389
TseI GCWGC 2 cut(s) 432, 823
TspDTI ATGAA 5 cut(s) 239, 676, 1050, 1112, 1204
TspGWI ACGGA 2 cut(s) 201, 846
TspRI CASTG 3 cut(s) 517, 883, 1389
VpaK11BI GGWCC 1 cut(s) 764
XapI RAATTY 3 cut(s) 155, 683, 1088
XceI RCATGY 1 cut(s) 1320
XmiI GTMKAC 1 cut(s) 615
XspI CTAG 6 cut(s) 147, 344, 579, 774, 882, 1293
ZraI GACGTC 1 cut(s) 518
ZrmI AGTACT 3 cut(s) 49, 577, 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.