Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000668

Physical Location & Seq

Genomic Coordinates Reverse (-)

48002381 .. 48006154

Gene Structure 3774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1387900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAAGAGTAAAAAGGGAAGCAAGGCACGTGCAAAATACATGGTTAAAGACAATGGCATGGTTGAAACTGAACCAGAAGATCTGCCAATCAAGTCTAAAAAGGGCAGTAAGAAGCGTGCTGCTGCACCGGATTCGAATCCTCCAACTGTCAAAGACATCCTTGAAATTGGTCATGGGGAGGCTGCAGATGGAGTTCTTGTTGATGATGACTTGAATGAACCAACCATGGGAGAAAAACTTGGAAGTTTAAATTTATTAGACAATGATAGACCAGAGAGCCATGATAAAGAAGAATCTTCTCTCGATCCAAAGCCTCCAACTGCAGACTCGGTTCATATTTTGCTCAAGCAAGCACTACATGCCGATGACCGTGCTCTTTTATTAGATTGCTTATACACCCAAGATGAGAAGGTCATTGCAAAGTCCATCTCACAGTTGAATCCATCTGGTCTTTTGAAGCTCTTACAATCTCTCATTTCTATCATTCAATCGAGGGGTGCAATTTTGGCATGTGCACTTCCATGGCTTAGAAGTTTACTTCTTCAACACGCAAGTGGTATAGTATCCCAAGAATCTTCTTTGAGTGCCTTGAACTCCTTATATCAGCTCATTGAGTCCAGAGTTTCAACTTTTCAGTCGGCTCTTCAGCTATCGAGTGTCTTAGACGTGCATTATCCAGGGGTAATTGATGATGTTGACGAGAATGAGACAATCACTCCATTTATTTATGAGTCCGATACGAGTGATGGAGAGGGATCTGAGGAAGCCATGGAAACCGATCAAGAGAATGAAGAGGAAGAGGAATCTGATGGCGCCCTTGATGGTGTTAGTGATTTTGATGGAATTGAGGACATGAGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12

Protein Analysis

288

Amino Acids

31.19

Weight (kDa)

4.38

Isoelectric Point (pI)

56.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Utp12	PF04003	123 - 220	3.5e-16	Dip2/Utp12 Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15420 AT1G15420
fragaria_vesca	FvH4_3g30171 FvH4_3g44471 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44510 FvH4_7g12841
malus_domestica	MD12G1094900.v1.1 MD14G1090800.v1.1 MD15G1387900.v1.1 MD15G1388000.v1.1
prunus_persica	Prupe.6G012700_v2.0.a1
pyrus_communis	pycom15g34820
rosa_chinensis	RchiOBHm_Chr1g0331681 RchiOBHm_Chr5g0081171 RchiOBHm_Chr5g0081181 RchiOBHm_Chr5g0081211
rosa_laevigata	RLG00000030438 RLG00000030441 RLG00000030443 RLG00000030447 RLG00000036915 RLG00000036917 RLG00000036919
rosa_multiflora	Rmu_sc0005044.1_g000010 Rmu_sc0005044.1_g000012 Rmu_sc0007768.1_g000001 Rmu_sc0020106.1_g000001 Rmu_ssc0000432.1_g000071 Rmu_ssc0000432.1_g000072 Rmu_ssc0000432.1_g000074 Rmu_ssc0000432.1_g000076 Rmu_ssc0000432.1_g000077
rosa_roxburghii	Rroxscaffold_1G00002290 Rroxscaffold_4G00323980
rosa_rugosa	Rorug01G0031400 Rorug01G0031500 Rorug05G0473700 Rorug05G0473800 Rorug05G0473900 Rorug05G0474000 Rorug05G0474100 Rorug05G0474200 Rorug05G0474400 Rorug05G0474700
rosa_samantha	Rh1AG119200 Rh1BG040400 Rh1CG045400 Rh1CG114200 Rh1CG114300 Rh1CG221300 Rh1DG050000 Rh1DG124400 Rh1DG124600 Rh5AG526300 Rh5AG526500 Rh5BG550600 Rh5CG573500 Rh5DG560300 Rh5DG560700
rosa_wichuraiana	Rw1G009620 Rw1G009630 Rw5G048900 Rw5G048910 Rw5G048940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	812
AclWI	GGATC	2 cut(s)	299, 763
AcsI	RAATTY	1 cut(s)	250
AcuI	CTGAAG	1 cut(s)	629
AcvI	CACGTG	1 cut(s)	29
AcyI	GRCGYC	1 cut(s)	813
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	9 cut(s)	65, 164, 214, 439, 457, 488, 545, 592, 627
AjiI	CACGTC	1 cut(s)	667
AjnI	CCWGG	1 cut(s)	676
AleI	CACNNNNGTG	1 cut(s)	552
AluBI	AGCT	3 cut(s)	460, 607, 649
AluI	AGCT	3 cut(s)	460, 607, 649
Alw21I	GWGCWC	2 cut(s)	376, 517
Alw26I	GTCTC	1 cut(s)	701
Alw44I	GTGCAC	1 cut(s)	513
AlwI	GGATC	2 cut(s)	299, 763
ApaLI	GTGCAC	1 cut(s)	513
ApeKI	GCWGC	3 cut(s)	119, 122, 182
ApoI	RAATTY	1 cut(s)	250
AspLEI	GCGC	1 cut(s)	815
AsuII	TTCGAA	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	517
BanI	GGYRCC	1 cut(s)	812
BbrPI	CACGTG	1 cut(s)	29
Bbv12I	GWGCWC	2 cut(s)	376, 517
BbvI	GCAGC	3 cut(s)	106, 109, 169
BccI	CCATC	7 cut(s)	182, 434, 451, 740, 803, 815, 833
BcgI	CGANNNNNNTGC	4 cut(s)	114, 148, 353, 387
BciT130I	CCWGG	1 cut(s)	678
BciVI	GTATCC	1 cut(s)	574
BcoDI	GTCTC	1 cut(s)	701
BfmI	CTRYAG	2 cut(s)	183, 321
BfoI	RGCGCY	1 cut(s)	816
BfuI	GTATCC	1 cut(s)	574
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	3 cut(s)	120, 123, 183
BlsI	GCNGC	3 cut(s)	121, 124, 184
Bme1390I	CCNGG	1 cut(s)	678
BmgBI	CACGTC	1 cut(s)	667
BmiI	GGNNCC	1 cut(s)	814
BmrFI	CCNGG	1 cut(s)	678
Bpu14I	TTCGAA	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	329
BsaAI	YACGTR	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	813
BsaJI	CCNNGG	4 cut(s)	225, 521, 677, 768
BsaWI	WCCGGW	1 cut(s)	127
BsaXI	ACNNNNNCTCC	4 cut(s)	183, 213, 700, 730
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	414
Bse8I	GATNNNNATC	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	678
BseDI	CCNNGG	4 cut(s)	225, 521, 677, 768
BseGI	GGATG	1 cut(s)	156
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	1 cut(s)	750
BseSI	GKGCMC	1 cut(s)	517
BseXI	GCAGC	3 cut(s)	106, 109, 169
BsgI	GTGCAG	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	812
BsiHKAI	GWGCWC	2 cut(s)	376, 517
BsiSI	CCGG	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	1 cut(s)	701
Bsp119I	TTCGAA	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	376, 517
Bsp143I	GATC	4 cut(s)	79, 304, 755, 778
Bsp19I	CCATGG	3 cut(s)	225, 521, 768
BspCNI	CTCAG	1 cut(s)	751
BspLI	GGNNCC	1 cut(s)	814
BspMAI	CTGCAG	2 cut(s)	187, 325
BspPI	GGATC	2 cut(s)	299, 763
BspQI	GCTCTTC	1 cut(s)	648
BspT104I	TTCGAA	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	812
BsrDI	GCAATG	1 cut(s)	414
BssECI	CCNNGG	4 cut(s)	225, 521, 677, 768
BssMI	GATC	4 cut(s)	79, 304, 755, 778
BssNI	GRCGYC	1 cut(s)	813
BssT1I	CCWWGG	3 cut(s)	225, 521, 768
Bst2UI	CCWGG	1 cut(s)	678
Bst4CI	ACNGT	3 cut(s)	148, 371, 435
Bst6I	CTCTTC	3 cut(s)	648, 786, 792
BstACI	GRCGYC	1 cut(s)	813
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstBAI	YACGTR	1 cut(s)	29
BstBI	TTCGAA	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	117, 351
BstDEI	CTNAG	3 cut(s)	527, 661, 759
BstDSI	CCRYGG	3 cut(s)	225, 521, 768
BstF5I	GGATG	1 cut(s)	156
BstH2I	RGCGCY	1 cut(s)	816
BstHHI	GCGC	1 cut(s)	815
BstKTI	GATC	4 cut(s)	82, 307, 758, 781
BstMAI	GTCTC	1 cut(s)	701
BstMBI	GATC	4 cut(s)	79, 304, 755, 778
BstMWI	GCNNNNNNNGC	2 cut(s)	359, 506
BstNI	CCWGG	1 cut(s)	678
BstNSI	RCATGY	2 cut(s)	362, 513
BstSCI	CCNGG	1 cut(s)	676
BstSFI	CTRYAG	2 cut(s)	183, 321
BstSLI	GKGCMC	1 cut(s)	517
BstV1I	GCAGC	3 cut(s)	106, 109, 169
BstX2I	RGATCY	2 cut(s)	79, 755
BstYI	RGATCY	2 cut(s)	79, 755
BsuI	GTATCC	1 cut(s)	574
BtgI	CCRYGG	3 cut(s)	225, 521, 768
BtrI	CACGTC	1 cut(s)	667
BtsCI	GGATG	1 cut(s)	156
Cac8I	GCNNGC	2 cut(s)	117, 351
CfoI	GCGC	1 cut(s)	815
CviJI	RGCY	9 cut(s)	182, 279, 313, 460, 526, 607, 641, 649, 767
CviKI_1	RGCY	9 cut(s)	182, 279, 313, 460, 526, 607, 641, 649, 767
DdeI	CTNAG	3 cut(s)	527, 661, 759
DinI	GGCGCC	1 cut(s)	814
DpnI	GATC	4 cut(s)	81, 306, 757, 780
DpnII	GATC	4 cut(s)	79, 304, 755, 778
DraI	TTTAAA	1 cut(s)	249
Eam1104I	CTCTTC	3 cut(s)	648, 786, 792
EarI	CTCTTC	3 cut(s)	648, 786, 792
Eco130I	CCWWGG	3 cut(s)	225, 521, 768
Eco57I	CTGAAG	1 cut(s)	629
Eco72I	CACGTG	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	676
EcoT14I	CCWWGG	3 cut(s)	225, 521, 768
EgeI	GGCGCC	1 cut(s)	814
EheI	GGCGCC	1 cut(s)	814
ErhI	CCWWGG	3 cut(s)	225, 521, 768
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
Fnu4HI	GCNGC	3 cut(s)	120, 123, 183
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	3 cut(s)	120, 123, 183
GlaI	GCGC	1 cut(s)	814
GluI	GCNGC	3 cut(s)	120, 123, 183
HaeII	RGCGCY	1 cut(s)	816
HapII	CCGG	1 cut(s)	128
HhaI	GCGC	1 cut(s)	815
Hin1I	GRCGYC	1 cut(s)	813
Hin6I	GCGC	1 cut(s)	813
HinP1I	GCGC	1 cut(s)	813
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HinfI	GANTC	9 cut(s)	131, 136, 293, 326, 439, 572, 614, 731, 803
HpaII	CCGG	1 cut(s)	128
Hpy166II	GTNNAC	3 cut(s)	515, 536, 697
Hpy188I	TCNGA	3 cut(s)	736, 760, 808
Hpy188III	TCNNGA	3 cut(s)	302, 618, 782
Hpy8I	GTNNAC	3 cut(s)	515, 536, 697
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	3 cut(s)	148, 371, 435
HpyCH4IV	ACGT	2 cut(s)	28, 666
HpyCH4V	TGCA	8 cut(s)	32, 125, 185, 323, 419, 500, 515, 670
HpyF10VI	GCNNNNNNNGC	2 cut(s)	359, 506
HpyF3I	CTNAG	3 cut(s)	527, 661, 759
HpySE526I	ACGT	2 cut(s)	28, 666
Hsp92I	GRCGYC	1 cut(s)	813
HspAI	GCGC	1 cut(s)	813
KasI	GGCGCC	1 cut(s)	812
Kzo9I	GATC	4 cut(s)	79, 304, 755, 778
LguI	GCTCTTC	1 cut(s)	648
LpnPI	CCDG	7 cut(s)	87, 141, 285, 432, 631, 663, 690
Lsp1109I	GCAGC	3 cut(s)	106, 109, 169
MaeII	ACGT	2 cut(s)	28, 666
MalI	GATC	4 cut(s)	81, 306, 757, 780
MboI	GATC	4 cut(s)	79, 304, 755, 778
MboII	GAAGA	9 cut(s)	16, 89, 288, 302, 533, 567, 635, 803, 809
MflI	RGATCY	2 cut(s)	79, 755
MhlI	GDGCHC	2 cut(s)	376, 517
MluCI	AATT	5 cut(s)	165, 250, 501, 684, 843
Mly113I	GGCGCC	1 cut(s)	813
MlyI	GAGTC	3 cut(s)	320, 623, 740
MmeI	TCCRAC	2 cut(s)	167, 341
MnlI	CCTC	9 cut(s)	150, 172, 324, 486, 745, 754, 787, 793, 841
MseI	TTAA	2 cut(s)	45, 248
MslI	CAYNNNNRTG	3 cut(s)	363, 520, 552
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	678
MvaI	CCWGG	1 cut(s)	678
MwoI	GCNNNNNNNGC	2 cut(s)	359, 506
NarI	GGCGCC	1 cut(s)	813
NcoI	CCATGG	3 cut(s)	225, 521, 768
NdeII	GATC	4 cut(s)	79, 304, 755, 778
NlaIV	GGNNCC	1 cut(s)	814
NspI	RCATGY	2 cut(s)	362, 513
NspV	TTCGAA	1 cut(s)	134
OliI	CACNNNNGTG	1 cut(s)	552
PciSI	GCTCTTC	1 cut(s)	648
PfeI	GAWTC	6 cut(s)	131, 136, 293, 439, 572, 803
PkrI	GCNGC	3 cut(s)	121, 124, 184
PleI	GAGTC	3 cut(s)	320, 622, 739
PluTI	GGCGCC	1 cut(s)	816
PmaCI	CACGTG	1 cut(s)	29
PmlI	CACGTG	1 cut(s)	29
PpsI	GAGTC	3 cut(s)	320, 622, 739
Ppu21I	YACGTR	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	676
PspCI	CACGTG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	676
PspN4I	GGNNCC	1 cut(s)	814
PstI	CTGCAG	2 cut(s)	187, 325
PsuI	RGATCY	2 cut(s)	79, 755
RseI	CAYNNNNRTG	3 cut(s)	363, 520, 552
SapI	GCTCTTC	1 cut(s)	648
SaqAI	TTAA	2 cut(s)	45, 248
SatI	GCNGC	3 cut(s)	120, 123, 183
Sau3AI	GATC	4 cut(s)	79, 304, 755, 778
SchI	GAGTC	3 cut(s)	320, 623, 740
ScrFI	CCNGG	1 cut(s)	678
SduI	GDGCHC	2 cut(s)	376, 517
SetI	ASST	6 cut(s)	31, 414, 462, 609, 651, 669
SfcI	CTRYAG	2 cut(s)	183, 321
SfoI	GGCGCC	1 cut(s)	814
SfuI	TTCGAA	1 cut(s)	134
SmiMI	CAYNNNNRTG	3 cut(s)	363, 520, 552
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	5 cut(s)	165, 250, 501, 684, 843
SspDI	GGCGCC	1 cut(s)	812
StyD4I	CCNGG	1 cut(s)	676
StyI	CCWWGG	3 cut(s)	225, 521, 768
TaaI	ACNGT	3 cut(s)	148, 371, 435
TaiI	ACGT	2 cut(s)	31, 669
TaqI	TCGA	4 cut(s)	134, 303, 491, 653
TasI	AATT	5 cut(s)	165, 250, 501, 684, 843
TfiI	GAWTC	6 cut(s)	131, 136, 293, 439, 572, 803
Tru1I	TTAA	2 cut(s)	45, 248
Tru9I	TTAA	2 cut(s)	45, 248
TseI	GCWGC	3 cut(s)	119, 122, 182
TspDTI	ATGAA	4 cut(s)	17, 231, 323, 804
VneI	GTGCAC	1 cut(s)	513
XapI	RAATTY	1 cut(s)	250
XceI	RCATGY	2 cut(s)	362, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.