Rh1DG050000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000668
Physical Location & Seq
Forward (+)
8120225 .. 8120779
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG050000.1

Sequence Viewer

Length: 555 bp
ATGAGTTTCCACGGTTTGGAAGAAAAGCCATATGTGGTAGGAACATCTAATGATTTAGTTTTGTGCTGCCAAACTCCACATGACCAAGACCAACGTGATTTCTACATTTGCAATCCATGCACAAGGCAATGGATTGCTCTTCCTCCCACCACCCGAAATCGCACGAATGTACCAGTTGGATTCATCTGTGATCGCTACTATGAGGAGGAAGATAGTACTAGTGGTACCAATATCACTGTTAATATTAAAAAGGACTACAGGTGCAAGGTTGTGAGAATTTTTCCTCACGATTTATCTAAATTTTTTTACGATCTTGTTTCGAAATTCATTGTTGAGGTATTCTCTTTTGAGACTGGTGAATGGAGAGAGTCAATTGTATCATCCCCACGAAGCATTGACATTGGAGACACTAGCGTTGCTTACAATGGAATGTTGTATTGGACATATACGTCATATGAGCCTCGTGAGGAGACCGGGCTTATTAGGCTGGATCCGTTTATGATCGGCAATGGCAGTACCAATTTCGTCTATTTGATGCACTTGAGAATATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

184

Amino Acids

21.47

Weight (kDa)

5.21

Isoelectric Point (pI)

35.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 9 - 166 8.9e-13 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 13 - 161 1.7e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 448
Acc65I GGTACC 1 cut(s) 224
AccB1I GGYRCC 1 cut(s) 224
AccB7I CCANNNNNTGG 1 cut(s) 16
AclWI GGATC 2 cut(s) 485, 498
AcsI RAATTY 3 cut(s) 276, 299, 323
AfaI GTAC 4 cut(s) 171, 217, 226, 517
AfiI CCNNNNNNNGG 1 cut(s) 16
AhlI ACTAGT 1 cut(s) 218
AjuI GAANNNNNNNTTGG 2 cut(s) 421, 453
Alw26I GTCTC 3 cut(s) 344, 399, 464
AlwI GGATC 2 cut(s) 485, 498
ApeKI GCWGC 1 cut(s) 66
ApoI RAATTY 3 cut(s) 276, 299, 323
Asp718I GGTACC 1 cut(s) 224
AsuC2I CCSGG 1 cut(s) 475
AsuHPI GGTGA 1 cut(s) 368
AsuII TTCGAA 1 cut(s) 320
BaeI ACNNNNGTAYC 2 cut(s) 153, 186
BamHI GGATCC 1 cut(s) 490
BanI GGYRCC 1 cut(s) 224
BauI CACGAG 1 cut(s) 462
BbvI GCAGC 1 cut(s) 53
BcnI CCSGG 1 cut(s) 475
BcoDI GTCTC 3 cut(s) 344, 399, 464
BcuI ACTAGT 1 cut(s) 218
BfaI CTAG 2 cut(s) 219, 411
BfmI CTRYAG 1 cut(s) 256
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
BmcAI AGTACT 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 475
BmiI GGNNCC 2 cut(s) 226, 492
BmrFI CCNGG 1 cut(s) 475
BmsI GCATC 1 cut(s) 525
BplI GAGNNNNNCTC 2 cut(s) 326, 358
Bpu14I TTCGAA 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 475
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 1 cut(s) 10
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 173, 358
Bse3DI GCAATG 2 cut(s) 134, 514
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 380
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMI GCAATG 2 cut(s) 134, 514
BseNI ACTGG 2 cut(s) 173, 358
BseRI GAGGAG 2 cut(s) 218, 482
BseXI GCAGC 1 cut(s) 53
BshNI GGYRCC 1 cut(s) 224
BsiSI CCGG 1 cut(s) 474
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 3 cut(s) 344, 399, 464
Bso31I GGTCTC 1 cut(s) 464
Bsp119I TTCGAA 1 cut(s) 320
Bsp143I GATC 4 cut(s) 190, 310, 490, 501
BspLI GGNNCC 2 cut(s) 226, 492
BspPI GGATC 2 cut(s) 485, 498
BspQI GCTCTTC 1 cut(s) 144
BspT104I TTCGAA 1 cut(s) 320
BspT107I GGYRCC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 464
BsrDI GCAATG 2 cut(s) 134, 514
BsrI ACTGG 2 cut(s) 173, 358
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 4 cut(s) 190, 310, 490, 501
BssSI CACGAG 1 cut(s) 462
Bst2BI CACGAG 1 cut(s) 462
Bst4CI ACNGT 2 cut(s) 14, 238
Bst6I CTCTTC 1 cut(s) 144
BstAPI GCANNNNNTGC 1 cut(s) 117
BstBI TTCGAA 1 cut(s) 320
BstDSI CCRYGG 1 cut(s) 10
BstF5I GGATG 1 cut(s) 380
BstKTI GATC 4 cut(s) 193, 313, 493, 504
BstMAI GTCTC 3 cut(s) 344, 399, 464
BstMBI GATC 4 cut(s) 190, 310, 490, 501
BstMWI GCNNNNNNNGC 2 cut(s) 117, 484
BstSCI CCNGG 1 cut(s) 473
BstSFI CTRYAG 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
BtgI CCRYGG 1 cut(s) 10
BtsCI GGATG 1 cut(s) 380
BtsIMutI CAGTG 1 cut(s) 234
Csp6I GTAC 4 cut(s) 170, 216, 225, 516
CviAII CATG 2 cut(s) 80, 117
CviJI RGCY 4 cut(s) 28, 460, 478, 487
CviKI_1 RGCY 4 cut(s) 28, 460, 478, 487
CviQI GTAC 4 cut(s) 170, 216, 225, 516
DpnI GATC 4 cut(s) 192, 312, 492, 503
DpnII GATC 4 cut(s) 190, 310, 490, 501
DrdI GACNNNNNNGTC 1 cut(s) 448
DseDI GACNNNNNNGTC 1 cut(s) 448
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 464
FaeI CATG 2 cut(s) 83, 120
FatI CATG 2 cut(s) 79, 116
FauNDI CATATG 2 cut(s) 31, 454
Fnu4HI GCNGC 1 cut(s) 67
FokI GGATG 1 cut(s) 367
Fsp4HI GCNGC 1 cut(s) 67
FspBI CTAG 2 cut(s) 219, 411
GluI GCNGC 1 cut(s) 67
HapII CCGG 1 cut(s) 474
Hin1II CATG 2 cut(s) 83, 120
HinfI GANTC 2 cut(s) 180, 368
HpaII CCGG 1 cut(s) 474
HphI GGTGA 1 cut(s) 368
Hpy188III TCNNGA 2 cut(s) 287, 464
HpyCH4III ACNGT 2 cut(s) 14, 238
HpyCH4IV ACGT 2 cut(s) 94, 449
HpyCH4V TGCA 4 cut(s) 111, 120, 264, 538
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 484
HpySE526I ACGT 2 cut(s) 94, 449
Hsp92II CATG 2 cut(s) 83, 120
KpnI GGTACC 1 cut(s) 228
Kzo9I GATC 4 cut(s) 190, 310, 490, 501
LguI GCTCTTC 1 cut(s) 144
LpnPI CCDG 5 cut(s) 186, 244, 339, 473, 487
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 1 cut(s) 525
MaeI CTAG 2 cut(s) 219, 411
MaeII ACGT 2 cut(s) 94, 449
MalI GATC 4 cut(s) 192, 312, 492, 503
MboI GATC 4 cut(s) 190, 310, 490, 501
MboII GAAGA 3 cut(s) 32, 131, 221
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 1 cut(s) 490
MluCI AATT 5 cut(s) 276, 299, 323, 372, 520
MlyI GAGTC 1 cut(s) 377
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 7 cut(s) 153, 196, 199, 294, 328, 460, 471
MseI TTAA 2 cut(s) 240, 246
MspI CCGG 1 cut(s) 474
MspR9I CCNGG 1 cut(s) 475
MunI CAATTG 1 cut(s) 372
MwoI GCNNNNNNNGC 2 cut(s) 117, 484
NciI CCSGG 1 cut(s) 475
NdeI CATATG 2 cut(s) 31, 454
NdeII GATC 4 cut(s) 190, 310, 490, 501
NlaIII CATG 2 cut(s) 83, 120
NlaIV GGNNCC 2 cut(s) 226, 492
NspV TTCGAA 1 cut(s) 320
PciSI GCTCTTC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 180
PflMI CCANNNNNTGG 1 cut(s) 16
PkrI GCNGC 1 cut(s) 68
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
PspN4I GGNNCC 2 cut(s) 226, 492
PsuI RGATCY 1 cut(s) 490
RsaI GTAC 4 cut(s) 171, 217, 226, 517
RsaNI GTAC 4 cut(s) 170, 216, 225, 516
SapI GCTCTTC 1 cut(s) 144
SaqAI TTAA 2 cut(s) 240, 246
SatI GCNGC 1 cut(s) 67
Sau3AI GATC 4 cut(s) 190, 310, 490, 501
ScaI AGTACT 1 cut(s) 217
SchI GAGTC 1 cut(s) 377
ScrFI CCNGG 1 cut(s) 475
SetI ASST 5 cut(s) 97, 263, 270, 339, 452
SfaNI GCATC 1 cut(s) 525
SfcI CTRYAG 1 cut(s) 256
SfuI TTCGAA 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 541
SmoI CTYRAG 1 cut(s) 541
SpeI ACTAGT 1 cut(s) 218
Sse9I AATT 5 cut(s) 276, 299, 323, 372, 520
SspI AATATT 2 cut(s) 244, 549
SspMI CTAG 2 cut(s) 219, 411
StyD4I CCNGG 1 cut(s) 473
TaaI ACNGT 2 cut(s) 14, 238
TaiI ACGT 2 cut(s) 97, 452
TaqI TCGA 1 cut(s) 320
TasI AATT 5 cut(s) 276, 299, 323, 372, 520
TatI WGTACW 1 cut(s) 215
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 2 cut(s) 240, 246
Tru9I TTAA 2 cut(s) 240, 246
TscAI CASTG 1 cut(s) 241
TseI GCWGC 1 cut(s) 66
TspDTI ATGAA 2 cut(s) 172, 316
TspGWI ACGGA 1 cut(s) 483
TspRI CASTG 1 cut(s) 241
Van91I CCANNNNNTGG 1 cut(s) 16
XapI RAATTY 3 cut(s) 276, 299, 323
XspI CTAG 2 cut(s) 219, 411
ZrmI AGTACT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.